HEADER TRANSFERASE 13-APR-07 2UYT TITLE STRUCTURE OF L-RHAMNULOSE KINASE IN COMPLEX WITH ADP AND BETA-L- TITLE 2 RHAMNULOSE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHAMNULOKINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: L-RHAMNULOSE KINASE; COMPND 5 EC: 2.7.1.5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI BL21(DE3); SOURCE 3 ORGANISM_TAXID: 469008; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: JM105; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PKK223-3 KEYWDS RHAMNOSE DEGRADATION, IN-LINE PHOSPHORYL TRANSFER, HEXOKINASE-HSP70- KEYWDS 2 ACTIN SUPERFAMILY, L-RHAMNULOSE KINASE, RHAMNOSE METABOLISM, KINASE, KEYWDS 3 INDUCED FIT, TRANSFERASE, RARE SUGARS EXPDTA X-RAY DIFFRACTION AUTHOR D.GRUENINGER,G.E.SCHULZ REVDAT 6 13-DEC-23 2UYT 1 HETSYN REVDAT 5 29-JUL-20 2UYT 1 COMPND REMARK HETNAM SITE REVDAT 4 24-OCT-18 2UYT 1 SOURCE REVDAT 3 13-JUL-11 2UYT 1 VERSN REVDAT 2 24-FEB-09 2UYT 1 VERSN REVDAT 1 26-JUN-07 2UYT 0 JRNL AUTH D.GRUENINGER,G.E.SCHULZ JRNL TITL SUBSTRATE SPECTRUM OF L-RHAMNULOSE KINASE RELATED TO MODELS JRNL TITL 2 DERIVED FROM TWO TERNARY COMPLEX STRUCTURES. JRNL REF FEBS LETT. V. 581 3127 2007 JRNL REFN ISSN 0014-5793 JRNL PMID 17568582 JRNL DOI 10.1016/J.FEBSLET.2007.05.075 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.GRUENINGER,G.E.SCHULZ REMARK 1 TITL STRUCTURE AND REACTION MECHANISM OF L-RHAMNULOSE KINASE FROM REMARK 1 TITL 2 ESCHERICHIA COLI REMARK 1 REF J.MOL.BIOL. V. 359 787 2006 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 16674975 REMARK 1 DOI 10.1016/J.JMB.2006.04.013 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 57380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3021 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3519 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 186 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3707 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 322 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : 0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.162 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3913 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5360 ; 1.342 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 506 ; 5.420 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;34.628 ;24.368 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 628 ;14.727 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;21.145 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 608 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3030 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1910 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2706 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 111 ; 0.207 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2489 ; 0.652 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3921 ; 1.032 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1615 ; 1.657 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1427 ; 2.513 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 71 REMARK 3 ORIGIN FOR THE GROUP (A): -12.8960 11.7800 27.3770 REMARK 3 T TENSOR REMARK 3 T11: 0.0238 T22: -0.0273 REMARK 3 T33: -0.0108 T12: 0.0250 REMARK 3 T13: -0.0044 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 1.1738 L22: 1.4190 REMARK 3 L33: 1.9923 L12: 0.3617 REMARK 3 L13: 0.8348 L23: 0.6283 REMARK 3 S TENSOR REMARK 3 S11: -0.0801 S12: -0.1006 S13: 0.1310 REMARK 3 S21: -0.0669 S22: 0.0483 S23: -0.0333 REMARK 3 S31: -0.3250 S32: -0.0310 S33: 0.0318 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): -10.9620 1.8940 7.0420 REMARK 3 T TENSOR REMARK 3 T11: 0.0788 T22: 0.0304 REMARK 3 T33: -0.0361 T12: -0.0141 REMARK 3 T13: 0.0219 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.6609 L22: 0.9539 REMARK 3 L33: 1.8573 L12: -0.0610 REMARK 3 L13: 0.3037 L23: -0.0499 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: 0.2062 S13: 0.0097 REMARK 3 S21: -0.3337 S22: 0.0319 S23: -0.0752 REMARK 3 S31: -0.1533 S32: 0.2027 S33: -0.0310 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 217 A 292 REMARK 3 ORIGIN FOR THE GROUP (A): -9.5660 -5.2580 22.3150 REMARK 3 T TENSOR REMARK 3 T11: -0.0278 T22: 0.0159 REMARK 3 T33: 0.0064 T12: 0.0195 REMARK 3 T13: -0.0013 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.2886 L22: 0.7471 REMARK 3 L33: 1.6189 L12: 0.2359 REMARK 3 L13: 0.0174 L23: -0.1373 REMARK 3 S TENSOR REMARK 3 S11: 0.0149 S12: -0.0271 S13: -0.1300 REMARK 3 S21: -0.0567 S22: 0.0310 S23: -0.0535 REMARK 3 S31: -0.0135 S32: 0.1942 S33: -0.0460 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 293 A 371 REMARK 3 ORIGIN FOR THE GROUP (A): -37.2770 -5.1890 21.4960 REMARK 3 T TENSOR REMARK 3 T11: -0.0241 T22: 0.0820 REMARK 3 T33: 0.0353 T12: 0.0341 REMARK 3 T13: -0.0251 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 2.0749 L22: 0.3901 REMARK 3 L33: 0.8972 L12: -0.1961 REMARK 3 L13: -0.2016 L23: 0.4240 REMARK 3 S TENSOR REMARK 3 S11: 0.0180 S12: 0.1162 S13: -0.1328 REMARK 3 S21: -0.0597 S22: -0.0914 S23: 0.1161 REMARK 3 S31: -0.0762 S32: -0.2619 S33: 0.0734 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 372 A 454 REMARK 3 ORIGIN FOR THE GROUP (A): -16.1520 -9.6190 30.4590 REMARK 3 T TENSOR REMARK 3 T11: -0.0190 T22: 0.0014 REMARK 3 T33: 0.0290 T12: 0.0210 REMARK 3 T13: -0.0079 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 1.2383 L22: 0.6163 REMARK 3 L33: 0.8652 L12: 0.1521 REMARK 3 L13: -0.0075 L23: -0.0509 REMARK 3 S TENSOR REMARK 3 S11: -0.0106 S12: -0.1633 S13: -0.1727 REMARK 3 S21: 0.0246 S22: 0.0207 S23: -0.0204 REMARK 3 S31: 0.0858 S32: -0.0060 S33: -0.0101 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 455 A 480 REMARK 3 ORIGIN FOR THE GROUP (A): -28.0920 -17.4910 35.1350 REMARK 3 T TENSOR REMARK 3 T11: 0.0162 T22: 0.0479 REMARK 3 T33: 0.0757 T12: -0.0259 REMARK 3 T13: -0.0009 T23: 0.0677 REMARK 3 L TENSOR REMARK 3 L11: 5.3182 L22: 2.8201 REMARK 3 L33: 2.6423 L12: 2.8188 REMARK 3 L13: 1.2557 L23: 0.2168 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: -0.0995 S13: -0.4158 REMARK 3 S21: 0.0145 S22: 0.1862 S23: 0.0543 REMARK 3 S31: 0.3197 S32: -0.1840 S33: -0.1938 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2UYT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-APR-07. REMARK 100 THE DEPOSITION ID IS D_1290032263. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60401 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 80.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2CGL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% (W/V) PEG 8000, 0.12 M LICL, 20 MM REMARK 280 ADP, 20 MM L-RHAMNULOSE-1-PHOSPHATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.52150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.42500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.54650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.42500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.52150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.54650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 69 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 70 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ARG 73 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 481 REMARK 465 ARG A 482 REMARK 465 GLN A 483 REMARK 465 THR A 484 REMARK 465 LYS A 485 REMARK 465 GLU A 486 REMARK 465 LEU A 487 REMARK 465 CYS A 488 REMARK 465 ALA A 489 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2265 O HOH A 2297 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 84 -45.56 73.11 REMARK 500 PHE A 207 -169.52 -120.80 REMARK 500 PRO A 223 -14.38 -48.58 REMARK 500 ASN A 248 78.37 -117.31 REMARK 500 ASN A 341 61.45 -156.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CGJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF L-RHAMNULOSE KINASE FROM ESCHERICHIA COLI IN REMARK 900 COMPLEX WITH L- FRUCTOSE AND ADP. REMARK 900 RELATED ID: 2CGK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF L-RHAMNULOSE KINASE FROM ESCHERICHIA COLI IN REMARK 900 AN OPEN UNCOMPLEXED CONFORMATION. REMARK 900 RELATED ID: 2CGL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF L-RHAMNULOSE KINASE FROM ESCHERICHIA COLI IN REMARK 900 COMPLEX WITH L- FRUCTOSE, ADP AND A MODELED ATP GAMMA PHOSPHATE. REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE DISCREPANCIES ARE BECAUSE THE DATABASE REMARK 999 SEQUENCE IS FROM E.COLI STRAIN O157-H7. THE GENE WHICH WAS REMARK 999 USED FOR PROTEIN EXPRESSION AND STRUCTURE DETERMINATION REMARK 999 WAS ISOLATED FROM E.COLI BL21 (DE3). DBREF 2UYT A 1 489 UNP Q8X899 RHAB_ECO57 1 489 SEQADV 2UYT ALA A 69 UNP Q8X899 GLU 69 ENGINEERED MUTATION SEQADV 2UYT ALA A 70 UNP Q8X899 GLU 70 ENGINEERED MUTATION SEQADV 2UYT ALA A 73 UNP Q8X899 ARG 73 ENGINEERED MUTATION SEQADV 2UYT ALA A 320 UNP Q8X899 SER 320 CONFLICT SEQADV 2UYT ASP A 343 UNP Q8X899 GLU 343 CONFLICT SEQADV 2UYT GLU A 344 UNP Q8X899 THR 344 CONFLICT SEQADV 2UYT MET A 356 UNP Q8X899 THR 356 CONFLICT SEQADV 2UYT LEU A 477 UNP Q8X899 ARG 477 CONFLICT SEQRES 1 A 489 MET THR PHE ARG ASN CYS VAL ALA VAL ASP LEU GLY ALA SEQRES 2 A 489 SER SER GLY ARG VAL MET LEU ALA ARG TYR GLU ARG GLU SEQRES 3 A 489 CYS ARG SER LEU THR LEU ARG GLU ILE HIS ARG PHE ASN SEQRES 4 A 489 ASN GLY LEU HIS SER GLN ASN GLY TYR VAL THR TRP ASP SEQRES 5 A 489 VAL ASP SER LEU GLU SER ALA ILE ARG LEU GLY LEU ASN SEQRES 6 A 489 LYS VAL CYS ALA ALA GLY ILE ALA ILE ASP SER ILE GLY SEQRES 7 A 489 ILE ASP THR TRP GLY VAL ASP PHE VAL LEU LEU ASP GLN SEQRES 8 A 489 GLN GLY GLN ARG VAL GLY LEU PRO VAL ALA TYR ARG ASP SEQRES 9 A 489 SER ARG THR ASN GLY LEU MET ALA GLN ALA GLN GLN GLN SEQRES 10 A 489 LEU GLY LYS ARG ASP ILE TYR GLN ARG SER GLY ILE GLN SEQRES 11 A 489 PHE LEU PRO PHE ASN THR LEU TYR GLN LEU ARG ALA LEU SEQRES 12 A 489 THR GLU GLN GLN PRO GLU LEU ILE PRO HIS ILE ALA HIS SEQRES 13 A 489 ALA LEU LEU MET PRO ASP TYR PHE SER TYR ARG LEU THR SEQRES 14 A 489 GLY LYS MET ASN TRP GLU TYR THR ASN ALA THR THR THR SEQRES 15 A 489 GLN LEU VAL ASN ILE ASN SER ASP ASP TRP ASP GLU SER SEQRES 16 A 489 LEU LEU ALA TRP SER GLY ALA ASN LYS ALA TRP PHE GLY SEQRES 17 A 489 ARG PRO THR HIS PRO GLY ASN VAL ILE GLY HIS TRP ILE SEQRES 18 A 489 CYS PRO GLN GLY ASN GLU ILE PRO VAL VAL ALA VAL ALA SEQRES 19 A 489 SER HIS ASP THR ALA SER ALA VAL ILE ALA SER PRO LEU SEQRES 20 A 489 ASN GLY SER ARG ALA ALA TYR LEU SER SER GLY THR TRP SEQRES 21 A 489 SER LEU MET GLY PHE GLU SER GLN THR PRO PHE THR ASN SEQRES 22 A 489 ASP THR ALA LEU ALA ALA ASN ILE THR ASN GLU GLY GLY SEQRES 23 A 489 ALA GLU GLY ARG TYR ARG VAL LEU LYS ASN ILE MET GLY SEQRES 24 A 489 LEU TRP LEU LEU GLN ARG VAL LEU GLN GLU ARG GLN ILE SEQRES 25 A 489 ASN ASP LEU PRO ALA LEU ILE ALA ALA THR GLN ALA LEU SEQRES 26 A 489 PRO ALA CYS ARG PHE ILE ILE ASN PRO ASN ASP ASP ARG SEQRES 27 A 489 PHE ILE ASN PRO ASP GLU MET CYS SER GLU ILE GLN ALA SEQRES 28 A 489 ALA CYS ARG GLU MET ALA GLN PRO ILE PRO GLU SER ASP SEQRES 29 A 489 ALA GLU LEU ALA ARG CYS ILE PHE ASP SER LEU ALA LEU SEQRES 30 A 489 LEU TYR ALA ASP VAL LEU HIS GLU LEU ALA GLN LEU ARG SEQRES 31 A 489 GLY GLU ASP PHE SER GLN LEU HIS ILE VAL GLY GLY GLY SEQRES 32 A 489 CYS GLN ASN THR LEU LEU ASN GLN LEU CYS ALA ASP ALA SEQRES 33 A 489 CYS GLY ILE ARG VAL ILE ALA GLY PRO VAL GLU ALA SER SEQRES 34 A 489 THR LEU GLY ASN ILE GLY ILE GLN LEU MET THR LEU ASP SEQRES 35 A 489 GLU LEU ASN ASN VAL ASP ASP PHE ARG GLN VAL VAL SER SEQRES 36 A 489 THR THR ALA ASN LEU THR THR PHE THR PRO ASN PRO ASP SEQRES 37 A 489 SER GLU ILE ALA HIS TYR VAL ALA LEU ILE HIS SER THR SEQRES 38 A 489 ARG GLN THR LYS GLU LEU CYS ALA HET LRH A1481 11 HET ADP A1482 27 HETNAM LRH 6-DEOXY-BETA-L-FRUCTOFURANOSE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETSYN LRH 6-DEOXY-BETA-L-FRUCTOSE; 6-DEOXY-L-FRUCTOSE; 6-DEOXY- HETSYN 2 LRH FRUCTOSE FORMUL 2 LRH C6 H12 O5 FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 HOH *322(H2 O) HELIX 1 1 ARG A 25 ARG A 28 5 4 HELIX 2 2 ASP A 52 ALA A 70 1 19 HELIX 3 3 ASP A 104 ASN A 108 5 5 HELIX 4 4 GLY A 109 GLY A 119 1 11 HELIX 5 5 GLY A 119 GLY A 128 1 10 HELIX 6 6 ASN A 135 GLN A 147 1 13 HELIX 7 7 PRO A 148 ILE A 154 5 7 HELIX 8 8 MET A 160 GLY A 170 1 11 HELIX 9 9 GLU A 175 THR A 180 1 6 HELIX 10 10 THR A 181 GLN A 183 5 3 HELIX 11 11 ASP A 193 GLY A 201 1 9 HELIX 12 12 ASN A 203 PHE A 207 5 5 HELIX 13 13 HIS A 236 SER A 245 1 10 HELIX 14 14 ASN A 273 ASN A 280 1 8 HELIX 15 15 GLY A 286 ARG A 290 5 5 HELIX 16 16 LEU A 300 ARG A 310 1 11 HELIX 17 17 ASP A 314 GLN A 323 1 10 HELIX 18 18 ASP A 336 ILE A 340 5 5 HELIX 19 19 GLU A 344 MET A 356 1 13 HELIX 20 20 SER A 363 GLY A 391 1 29 HELIX 21 21 GLY A 401 GLN A 405 5 5 HELIX 22 22 ASN A 406 GLY A 418 1 13 HELIX 23 23 GLU A 427 LEU A 441 1 15 HELIX 24 24 ASN A 446 ALA A 458 1 13 HELIX 25 25 SER A 469 ILE A 478 1 10 SHEET 1 AA 6 SER A 29 ASN A 39 0 SHEET 2 AA 6 SER A 15 GLU A 24 -1 O GLY A 16 N PHE A 38 SHEET 3 AA 6 ARG A 4 LEU A 11 -1 O ARG A 4 N TYR A 23 SHEET 4 AA 6 SER A 76 THR A 81 1 O SER A 76 N VAL A 7 SHEET 5 AA 6 GLU A 227 VAL A 231 1 O PRO A 229 N ILE A 77 SHEET 6 AA 6 VAL A 216 ILE A 221 -1 N ILE A 217 O VAL A 230 SHEET 1 AB 2 HIS A 43 GLN A 45 0 SHEET 2 AB 2 TYR A 48 THR A 50 -1 O TYR A 48 N GLN A 45 SHEET 1 AC 3 ARG A 95 VAL A 96 0 SHEET 2 AC 3 PHE A 86 LEU A 89 -1 O LEU A 88 N VAL A 96 SHEET 3 AC 3 HIS A 156 LEU A 159 -1 O HIS A 156 N LEU A 89 SHEET 1 AD 7 THR A 282 GLU A 284 0 SHEET 2 AD 7 TYR A 291 ILE A 297 -1 O ARG A 292 N GLU A 284 SHEET 3 AD 7 SER A 261 SER A 267 -1 O SER A 261 N ILE A 297 SHEET 4 AD 7 ALA A 252 SER A 257 -1 O TYR A 254 N GLY A 264 SHEET 5 AD 7 GLN A 396 VAL A 400 1 O GLN A 396 N ALA A 253 SHEET 6 AD 7 ARG A 420 ALA A 423 1 O ARG A 420 N LEU A 397 SHEET 7 AD 7 THR A 461 PHE A 463 -1 O THR A 461 N ALA A 423 SSBOND 1 CYS A 68 CYS A 222 1555 1555 2.03 CISPEP 1 GLY A 424 PRO A 425 0 0.27 CRYST1 51.043 51.093 158.850 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019591 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019572 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006295 0.00000