HEADER TRANSFERASE 20-MAY-07 2V0W TITLE N- AND C-TERMINAL HELICES OF OAT LOV2 (404-546) ARE INVOLVED IN LIGHT- TITLE 2 INDUCED SIGNAL TRANSDUCTION (CRYO-TRAPPED LIGHT STRUCTURE OF LOV2 TITLE 3 (404-546)) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NPH1-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGHT, OXYGEN, VOLTAGE DOMAIN, RESIDUES 404-546; COMPND 5 SYNONYM: LOV2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AVENA SATIVA; SOURCE 3 ORGANISM_COMMON: OAT; SOURCE 4 ORGANISM_TAXID: 4498; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHIS-GB1-PARALLEL1 KEYWDS LOV2, KINASE, TRANSFERASE, ATP-BINDING, AVENA SATIVA, KEYWDS 2 SERINE/THREONINE-PROTEIN KINASE, PHOTOTROPIN1, LIGHT-INDUCED SIGNAL KEYWDS 3 TRANSDUCTION, NUCLEOTIDE-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.S.HALAVATY,K.MOFFAT REVDAT 5 13-DEC-23 2V0W 1 REMARK REVDAT 4 16-OCT-19 2V0W 1 REMARK LINK REVDAT 3 13-JUL-11 2V0W 1 VERSN REVDAT 2 24-FEB-09 2V0W 1 VERSN REVDAT 1 11-DEC-07 2V0W 0 JRNL AUTH A.S.HALAVATY,K.MOFFAT JRNL TITL N- AND C-TERMINAL FLANKING REGIONS MODULATE LIGHT-INDUCED JRNL TITL 2 SIGNAL TRANSDUCTION IN THE LOV2 DOMAIN OF THE BLUE LIGHT JRNL TITL 3 SENSOR PHOTOTROPIN 1 FROM AVENA SATIVA. JRNL REF BIOCHEMISTRY V. 46 14001 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 18001137 JRNL DOI 10.1021/BI701543E REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 14199 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 748 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 988 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 44 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1186 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : 0.37000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.084 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1304 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 903 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1771 ; 1.553 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2206 ; 0.941 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 160 ; 6.527 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;30.702 ;24.627 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 235 ;12.351 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;17.015 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 197 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1427 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 253 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 284 ; 0.247 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1011 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 641 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 701 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 111 ; 0.193 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.265 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 59 ; 0.327 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.245 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1009 ; 1.106 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1237 ; 1.173 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 644 ; 2.566 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 528 ; 3.547 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 401 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1150 -6.4860 11.3180 REMARK 3 T TENSOR REMARK 3 T11: 0.0241 T22: -0.1413 REMARK 3 T33: 0.0981 T12: -0.0363 REMARK 3 T13: 0.0007 T23: 0.0430 REMARK 3 L TENSOR REMARK 3 L11: 2.0493 L22: 3.7196 REMARK 3 L33: 8.5640 L12: 0.6216 REMARK 3 L13: 0.1555 L23: -1.2127 REMARK 3 S TENSOR REMARK 3 S11: 0.0086 S12: -0.0917 S13: -0.1648 REMARK 3 S21: -0.0466 S22: 0.2141 S23: 0.3112 REMARK 3 S31: 0.4068 S32: -0.4648 S33: -0.2227 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 415 A 516 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4130 1.0820 6.9410 REMARK 3 T TENSOR REMARK 3 T11: 0.0377 T22: -0.1483 REMARK 3 T33: 0.0476 T12: -0.0129 REMARK 3 T13: -0.0163 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 2.0505 L22: 0.8701 REMARK 3 L33: 1.3665 L12: -0.1833 REMARK 3 L13: -0.8588 L23: -0.0580 REMARK 3 S TENSOR REMARK 3 S11: -0.0191 S12: -0.2265 S13: -0.0300 REMARK 3 S21: 0.0079 S22: 0.0125 S23: 0.0051 REMARK 3 S31: -0.0091 S32: 0.0851 S33: 0.0066 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 517 A 546 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5630 -0.0650 -5.2750 REMARK 3 T TENSOR REMARK 3 T11: 0.0664 T22: -0.1314 REMARK 3 T33: 0.0571 T12: -0.0095 REMARK 3 T13: -0.0269 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 0.2785 L22: 1.1261 REMARK 3 L33: 1.7789 L12: 0.2279 REMARK 3 L13: 0.4711 L23: -0.5752 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: 0.1858 S13: -0.0946 REMARK 3 S21: -0.0218 S22: -0.0965 S23: 0.0326 REMARK 3 S31: 0.0080 S32: -0.1900 S33: 0.0765 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2V0W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1290032614. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9002 REMARK 200 MONOCHROMATOR : BENT GE(111) MONOCHROMATOR REMARK 200 OPTICS : BENT CONICAL SI-MIRROR (RH REMARK 200 COATED) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50154 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2V0U REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 0.07 M SODIUM ACETATE, PH REMARK 280 4.6, 5.6% PEG 4000, 30% GLYCEROL, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.78250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.25350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.01050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.25350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.78250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.01050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2013 O HOH A 2129 2.10 REMARK 500 OD1 ASN A 538 O HOH A 2134 2.11 REMARK 500 O HOH A 2112 O HOH A 2114 2.17 REMARK 500 O HOH A 2096 O HOH A 2105 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 422 C PRO A 423 N -0.175 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 422 CA - C - N ANGL. DEV. = -18.2 DEGREES REMARK 500 PRO A 423 C - N - CA ANGL. DEV. = -14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 403 71.18 55.74 REMARK 500 ASP A 522 -128.70 52.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A 422 -24.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A1547 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1548 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1549 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1550 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V1A RELATED DB: PDB REMARK 900 N- AND C-TERMINAL HELICES OF OAT LOV2 ( 404-546) ARE INVOLVED IN REMARK 900 LIGHT-INDUCED SIGNAL TRANSDUCTION (ROOM TEMPERATURE (293K) DARK REMARK 900 STRUCTURE OF LOV2 (404-546)) REMARK 900 RELATED ID: 2V0U RELATED DB: PDB REMARK 900 N- AND C-TERMINAL HELICES OF OAT LOV2 ( 404-546) ARE INVOLVED IN REMARK 900 LIGHT-INDUCED SIGNAL TRANSDUCTION (CRYO DARK STRUCTURE OF LOV2 (404- REMARK 900 546)) REMARK 900 RELATED ID: 2V1B RELATED DB: PDB REMARK 900 N- AND C-TERMINAL HELICES OF OAT LOV2 ( 404-546) ARE INVOLVED IN REMARK 900 LIGHT-INDUCED SIGNAL TRANSDUCTION (ROOM TEMPERATURE (293K) LIGHT REMARK 900 STRUCTURE OF LOV2 (404-546)) REMARK 999 REMARK 999 SEQUENCE REMARK 999 FIRST THREE N-TERMINAL RESIDUES DO NOT BELONG TO LOV2 REMARK 999 SEQUENCE DBREF 2V0W A 401 403 PDB 2V0W 2V0W 401 403 DBREF 2V0W A 404 546 UNP O49003 O49003_AVESA 404 546 SEQRES 1 A 146 GLY GLU PHE LEU ALA THR THR LEU GLU ARG ILE GLU LYS SEQRES 2 A 146 ASN PHE VAL ILE THR ASP PRO ARG LEU PRO ASP ASN PRO SEQRES 3 A 146 ILE ILE PHE ALA SER ASP SER PHE LEU GLN LEU THR GLU SEQRES 4 A 146 TYR SER ARG GLU GLU ILE LEU GLY ARG ASN CYS ARG PHE SEQRES 5 A 146 LEU GLN GLY PRO GLU THR ASP ARG ALA THR VAL ARG LYS SEQRES 6 A 146 ILE ARG ASP ALA ILE ASP ASN GLN THR GLU VAL THR VAL SEQRES 7 A 146 GLN LEU ILE ASN TYR THR LYS SER GLY LYS LYS PHE TRP SEQRES 8 A 146 ASN LEU PHE HIS LEU GLN PRO MET ARG ASP GLN LYS GLY SEQRES 9 A 146 ASP VAL GLN TYR PHE ILE GLY VAL GLN LEU ASP GLY THR SEQRES 10 A 146 GLU HIS VAL ARG ASP ALA ALA GLU ARG GLU GLY VAL MET SEQRES 11 A 146 LEU ILE LYS LYS THR ALA GLU ASN ILE ASP GLU ALA ALA SEQRES 12 A 146 LYS GLU LEU HET FMN A1547 31 HET GOL A1548 6 HET GOL A1549 6 HET GOL A1550 6 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM GOL GLYCEROL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *161(H2 O) HELIX 1 1 THR A 407 ILE A 411 5 5 HELIX 2 2 SER A 431 GLU A 439 1 9 HELIX 3 3 ASN A 449 GLN A 454 5 6 HELIX 4 4 ASP A 459 ASN A 472 1 14 HELIX 5 5 ARG A 521 LYS A 544 1 24 SHEET 1 AA 5 ILE A 427 ALA A 430 0 SHEET 2 AA 5 PHE A 415 THR A 418 -1 O ILE A 417 N ILE A 428 SHEET 3 AA 5 VAL A 506 GLY A 516 -1 O PHE A 509 N THR A 418 SHEET 4 AA 5 LYS A 489 ARG A 500 -1 O TRP A 491 N GLY A 516 SHEET 5 AA 5 VAL A 476 TYR A 483 -1 O VAL A 476 N LEU A 496 LINK SG ACYS A 450 C4A FMN A1547 1555 1555 1.87 SITE 1 AC1 26 VAL A 416 THR A 418 ASN A 425 ASN A 449 SITE 2 AC1 26 CYS A 450 ARG A 451 LEU A 453 GLN A 454 SITE 3 AC1 26 VAL A 463 ARG A 467 ILE A 470 LEU A 480 SITE 4 AC1 26 ASN A 482 ASN A 492 PHE A 494 LEU A 496 SITE 5 AC1 26 PHE A 509 ILE A 510 GLY A 511 GLN A 513 SITE 6 AC1 26 HOH A2031 HOH A2152 HOH A2153 HOH A2154 SITE 7 AC1 26 HOH A2155 HOH A2156 SITE 1 AC2 6 PHE A 403 LEU A 404 LYS A 503 GLU A 525 SITE 2 AC2 6 ARG A 526 GOL A1550 SITE 1 AC3 8 THR A 462 LYS A 465 VAL A 478 GLN A 479 SITE 2 AC3 8 HIS A 519 GOL A1550 HOH A2058 HOH A2159 SITE 1 AC4 6 THR A 477 GLN A 479 LYS A 503 GLU A 525 SITE 2 AC4 6 GOL A1548 GOL A1549 CRYST1 35.565 56.021 66.507 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028118 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017850 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015036 0.00000