HEADER STRUCTURAL PROTEIN 30-MAY-07 2V1W TITLE CRYSTAL STRUCTURE OF HUMAN LIM PROTEIN RIL (PDLIM4) PDZ DOMAIN BOUND TITLE 2 TO THE C-TERMINAL PEPTIDE OF HUMAN ALPHA-ACTININ-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PDZ AND LIM DOMAIN PROTEIN 4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PDZ DOMAIN, RESIDUES 1-85; COMPND 5 SYNONYM: PDLIM4, LIM PROTEIN RIL, REVERSION-INDUCED LIM PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS ACTIN, STRESS, FIBRE DYNAMICS, CYTOSKELETON, LIM DOMAIN, METAL- KEYWDS 2 BINDING, PHOSPHORYLATION, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.SOUNDARARAJAN,L.SHRESTHA,A.C.W.PIKE,E.SALAH,N.BURGESS-BROWN, AUTHOR 2 J.ELKINS,C.UMEANO,E.UGOCHUKWU,F.VON DELFT,C.H.ARROWSMITH,A.EDWARDS, AUTHOR 3 J.WEIGELT,M.SUNDSTROM,D.DOYLE REVDAT 6 13-DEC-23 2V1W 1 REMARK LINK REVDAT 5 24-JAN-18 2V1W 1 AUTHOR REVDAT 4 28-JAN-15 2V1W 1 JRNL REVDAT 3 13-JUL-11 2V1W 1 VERSN REVDAT 2 24-FEB-09 2V1W 1 VERSN REVDAT 1 12-JUN-07 2V1W 0 JRNL AUTH J.M.ELKINS,C.GILEADI,L.SHRESTHA,C.PHILLIPS,J.WANG, JRNL AUTH 2 J.R.C.MUNIZ,D.A.DOYLE JRNL TITL UNUSUAL BINDING INTERACTIONS IN PDZ DOMAIN CRYSTAL JRNL TITL 2 STRUCTURES HELP EXPLAIN BINDING MECHANISMS. JRNL REF PROTEIN SCI. V. 19 731 2010 JRNL REFN ISSN 0961-8368 JRNL PMID 20120020 JRNL DOI 10.1002/PRO.349 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0037 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 853 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1145 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1300 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 21.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -0.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.714 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1353 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 916 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1835 ; 1.361 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2242 ; 0.869 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 179 ; 6.025 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 49 ;26.887 ;22.653 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 208 ;11.624 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ; 9.181 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 212 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1513 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 256 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 203 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 924 ; 0.204 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 635 ; 0.163 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 747 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 93 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.124 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 54 ; 0.323 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.124 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 925 ; 2.476 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1426 ; 3.430 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 481 ; 5.315 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 408 ; 7.590 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0721 27.2006 8.3372 REMARK 3 T TENSOR REMARK 3 T11: -0.0635 T22: -0.0828 REMARK 3 T33: -0.0735 T12: 0.0231 REMARK 3 T13: -0.0087 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 0.9227 L22: 1.6222 REMARK 3 L33: 1.8316 L12: 0.2291 REMARK 3 L13: 0.0992 L23: 0.6551 REMARK 3 S TENSOR REMARK 3 S11: 0.0151 S12: 0.0328 S13: -0.0613 REMARK 3 S21: 0.0294 S22: 0.0343 S23: -0.0256 REMARK 3 S31: 0.1255 S32: 0.0350 S33: -0.0494 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 89 REMARK 3 ORIGIN FOR THE GROUP (A): 18.3737 34.8455 31.7488 REMARK 3 T TENSOR REMARK 3 T11: -0.0595 T22: -0.0433 REMARK 3 T33: -0.0872 T12: 0.0447 REMARK 3 T13: -0.0299 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 2.1134 L22: 1.0392 REMARK 3 L33: 2.4264 L12: 0.0752 REMARK 3 L13: 0.2882 L23: -0.2062 REMARK 3 S TENSOR REMARK 3 S11: -0.0267 S12: -0.1015 S13: -0.0622 REMARK 3 S21: -0.0094 S22: 0.0356 S23: -0.1244 REMARK 3 S31: 0.0832 S32: 0.2067 S33: -0.0088 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2V1W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1290032747. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00234 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16891 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 61.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1GQ4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 10000, 0.2M MAGNESIUM REMARK 280 CHLORIDE, 0.1M TRIS PH8.5, PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.51450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.51450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.51450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.51450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.51450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.51450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.51450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.51450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ENTITY CRYSTALLISED CONTAINS AN ARTIFICIAL REMARK 300 OLIGOMERISATIONC-TERMINAL TAG THAT ALLOWS MODULES TO REMARK 300 SELF-ASSOCIATE REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 43.51450 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 43.51450 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 -43.51450 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 43.51450 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 87.02900 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2022 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2053 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 70 CE NZ REMARK 470 HIS A 73 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 74 CG OD1 OD2 REMARK 470 MET B 1 CG SD CE REMARK 470 ARG B 8 CD NE CZ NH1 NH2 REMARK 470 ARG B 68 CD NE CZ NH1 NH2 REMARK 470 LYS B 70 CE NZ REMARK 470 HIS B 73 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 74 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 HIS B 75 NE2 HIS B 75 7556 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 73 -74.61 -110.18 REMARK 500 SER B 11 175.45 -59.36 REMARK 500 ALA B 42 40.30 72.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE B 1091 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1090 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 86 O REMARK 620 2 HOH B2001 O 177.6 REMARK 620 3 HOH B2061 O 88.8 91.9 REMARK 620 4 HOH B2065 O 87.7 90.0 84.3 REMARK 620 5 HOH B2066 O 88.1 94.1 96.0 175.8 REMARK 620 6 HOH B2069 O 93.1 85.8 169.3 85.3 94.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1090 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1090 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE B 1091 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V1X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN RECQ-LIKE DNA HELICASE DBREF 2V1W A 0 0 PDB 2V1W 2V1W 0 0 DBREF 2V1W A 1 85 UNP P50479 PDLI4_HUMAN 1 85 DBREF 2V1W A 86 89 PDB 2V1W 2V1W 86 89 DBREF 2V1W B 0 0 PDB 2V1W 2V1W 0 0 DBREF 2V1W B 1 85 UNP P50479 PDLI4_HUMAN 1 85 DBREF 2V1W B 86 89 PDB 2V1W 2V1W 86 89 SEQRES 1 A 90 SER MET PRO HIS SER VAL THR LEU ARG GLY PRO SER PRO SEQRES 2 A 90 TRP GLY PHE ARG LEU VAL GLY GLY ARG ASP PHE SER ALA SEQRES 3 A 90 PRO LEU THR ILE SER ARG VAL HIS ALA GLY SER LYS ALA SEQRES 4 A 90 ALA LEU ALA ALA LEU CYS PRO GLY ASP LEU ILE GLN ALA SEQRES 5 A 90 ILE ASN GLY GLU SER THR GLU LEU MET THR HIS LEU GLU SEQRES 6 A 90 ALA GLN ASN ARG ILE LYS GLY CYS HIS ASP HIS LEU THR SEQRES 7 A 90 LEU SER VAL SER ARG PRO GLU GLY GLU SER ASP LEU SEQRES 1 B 90 SER MET PRO HIS SER VAL THR LEU ARG GLY PRO SER PRO SEQRES 2 B 90 TRP GLY PHE ARG LEU VAL GLY GLY ARG ASP PHE SER ALA SEQRES 3 B 90 PRO LEU THR ILE SER ARG VAL HIS ALA GLY SER LYS ALA SEQRES 4 B 90 ALA LEU ALA ALA LEU CYS PRO GLY ASP LEU ILE GLN ALA SEQRES 5 B 90 ILE ASN GLY GLU SER THR GLU LEU MET THR HIS LEU GLU SEQRES 6 B 90 ALA GLN ASN ARG ILE LYS GLY CYS HIS ASP HIS LEU THR SEQRES 7 B 90 LEU SER VAL SER ARG PRO GLU GLY GLU SER ASP LEU HET EDO A1090 4 HET MG B1090 1 HET 1PE B1091 12 HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 3 EDO C2 H6 O2 FORMUL 4 MG MG 2+ FORMUL 5 1PE C10 H22 O6 FORMUL 6 HOH *145(H2 O) HELIX 1 1 ARG A 21 SER A 24 5 4 HELIX 2 2 SER A 36 ALA A 41 1 6 HELIX 3 3 THR A 61 GLY A 71 1 11 HELIX 4 4 ARG B 21 SER B 24 5 4 HELIX 5 5 SER B 36 ALA B 41 1 6 HELIX 6 6 THR B 61 LYS B 70 1 10 SHEET 1 AA 4 HIS A 3 ARG A 8 0 SHEET 2 AA 4 HIS A 75 SER A 81 -1 O LEU A 76 N LEU A 7 SHEET 3 AA 4 LEU A 48 ILE A 52 -1 O LEU A 48 N SER A 81 SHEET 4 AA 4 GLU A 55 SER A 56 -1 O GLU A 55 N ILE A 52 SHEET 1 AB 2 PHE A 15 GLY A 20 0 SHEET 2 AB 2 ALA A 25 VAL A 32 -1 O ALA A 25 N GLY A 20 SHEET 1 BA 4 HIS B 3 ARG B 8 0 SHEET 2 BA 4 HIS B 75 SER B 81 -1 O LEU B 76 N LEU B 7 SHEET 3 BA 4 LEU B 48 ILE B 52 -1 O LEU B 48 N SER B 81 SHEET 4 BA 4 GLU B 55 SER B 56 -1 O GLU B 55 N ILE B 52 SHEET 1 BB 2 PHE B 15 GLY B 20 0 SHEET 2 BB 2 ALA B 25 VAL B 32 -1 O ALA B 25 N GLY B 20 LINK O GLU B 86 MG MG B1090 1555 1555 2.11 LINK MG MG B1090 O HOH B2001 1555 1555 2.13 LINK MG MG B1090 O HOH B2061 1555 1555 2.16 LINK MG MG B1090 O HOH B2065 1555 1555 2.13 LINK MG MG B1090 O HOH B2066 1555 1555 2.16 LINK MG MG B1090 O HOH B2069 1555 1555 2.09 CISPEP 1 GLY A 9 PRO A 10 0 1.66 CISPEP 2 SER A 11 PRO A 12 0 0.95 CISPEP 3 GLY B 9 PRO B 10 0 1.33 CISPEP 4 SER B 11 PRO B 12 0 3.00 SITE 1 AC1 6 GLU B 86 HOH B2001 HOH B2061 HOH B2065 SITE 2 AC1 6 HOH B2066 HOH B2069 SITE 1 AC2 4 ARG A 16 ARG A 82 ASP A 88 HOH A2072 SITE 1 AC3 9 ALA B 25 PRO B 26 LEU B 27 LEU B 48 SITE 2 AC3 9 ILE B 49 GLN B 50 THR B 57 GLU B 58 SITE 3 AC3 9 HOH B2043 CRYST1 87.029 87.029 53.917 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011490 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011490 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018547 0.00000 MTRIX1 1 0.061580 -0.901990 0.427350 39.15546 1 MTRIX2 1 -0.977620 -0.140800 -0.156310 48.88204 1 MTRIX3 1 0.201160 -0.408160 -0.890470 48.22211 1