HEADER RECEPTOR 01-JUN-07 2V25 TITLE STRUCTURE OF THE CAMPYLOBACTER JEJUNI ANTIGEN PEB1A, AN ASPARTATE AND TITLE 2 GLUTAMATE RECEPTOR WITH BOUND ASPARTATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR CELL-BINDING FACTOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CBF1, PEB1, PEB1A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI; SOURCE 3 ORGANISM_TAXID: 197; SOURCE 4 STRAIN: NCTC 11168; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS ANTIGEN, ADHESIN, ASPARTATE, GLUTAMATE, TRANSPORT, ABC TRANSPORT, KEYWDS 2 VIRULENCE FACTOR, CAMPYLOBACTER JEJUNI, RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR A.MULLER,E.DODSON,M.DEL ROCIO LEON-KEMPIS,D.J.KELLY,A.J.WILKINSON, AUTHOR 2 K.S.WILSON REVDAT 5 13-DEC-23 2V25 1 LINK REVDAT 4 24-FEB-09 2V25 1 VERSN REVDAT 3 28-AUG-07 2V25 1 JRNL REVDAT 2 24-JUL-07 2V25 1 JRNL REVDAT 1 26-JUN-07 2V25 0 JRNL AUTH A.MULLER,M.DEL ROCIO LEON-KEMPIS,E.DODSON,K.S.WILSON, JRNL AUTH 2 A.J.WILKINSON,D.J.KELLY JRNL TITL A BACTERIAL VIRULENCE FACTOR WITH A DUAL ROLE AS AN ADHESIN JRNL TITL 2 AND A SOLUTE BINDING-PROTEIN: THE CRYSTAL STRUCTURE AT 1.5 A JRNL TITL 3 RESOLUTION OF THE PEB1A PROTEIN FROM THE FOOD-BORNE HUMAN JRNL TITL 4 PATHOGEN CAMPYLOBACTER JEJUNI JRNL REF J.MOL.BIOL. V. 372 160 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17631313 JRNL DOI 10.1016/J.JMB.2007.06.041 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 70979 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3759 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3894 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 215 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3525 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 532 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : -0.38000 REMARK 3 B33 (A**2) : -0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.090 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.500 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3758 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2574 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5095 ; 1.272 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6378 ; 0.824 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 497 ; 7.448 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;34.340 ;25.540 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 697 ;11.175 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;18.279 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 582 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4218 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 698 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 777 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2620 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1967 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1971 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 394 ; 0.112 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.148 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 29 ; 0.161 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.161 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2586 ; 0.923 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3901 ; 1.243 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1468 ; 1.683 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1193 ; 2.289 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2V25 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1290032711. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2823 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75346 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1XT8 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M ZINC CHLORIDE, 0.1 M HEPES PH 7 REMARK 280 AND 20 % W/V PEG 6000, PH 6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.93400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -25 REMARK 465 VAL A -24 REMARK 465 PHE A -23 REMARK 465 ARG A -22 REMARK 465 LYS A -21 REMARK 465 SER A -20 REMARK 465 LEU A -19 REMARK 465 LEU A -18 REMARK 465 LYS A -17 REMARK 465 LEU A -16 REMARK 465 ALA A -15 REMARK 465 VAL A -14 REMARK 465 PHE A -13 REMARK 465 ALA A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 ALA A -9 REMARK 465 CYS A -8 REMARK 465 VAL A -7 REMARK 465 ALA A -6 REMARK 465 PHE A -5 REMARK 465 SER A -4 REMARK 465 ASN A -3 REMARK 465 ALA A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 MET B -25 REMARK 465 VAL B -24 REMARK 465 PHE B -23 REMARK 465 ARG B -22 REMARK 465 LYS B -21 REMARK 465 SER B -20 REMARK 465 LEU B -19 REMARK 465 LEU B -18 REMARK 465 LYS B -17 REMARK 465 LEU B -16 REMARK 465 ALA B -15 REMARK 465 VAL B -14 REMARK 465 PHE B -13 REMARK 465 ALA B -12 REMARK 465 LEU B -11 REMARK 465 GLY B -10 REMARK 465 ALA B -9 REMARK 465 CYS B -8 REMARK 465 VAL B -7 REMARK 465 ALA B -6 REMARK 465 PHE B -5 REMARK 465 SER B -4 REMARK 465 ASN B -3 REMARK 465 ALA B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 ALA B 1 REMARK 465 GLU B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 NZ REMARK 470 ASP A 53 CG OD1 OD2 REMARK 470 ASP A 54 CG OD1 OD2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 LYS A 135 CE NZ REMARK 470 ASP A 147 CG OD1 OD2 REMARK 470 LYS A 166 NZ REMARK 470 ASP A 184 CG OD1 OD2 REMARK 470 LYS A 218 CE NZ REMARK 470 LYS A 229 CD CE NZ REMARK 470 LYS B 55 CD CE NZ REMARK 470 GLU B 97 CD OE1 OE2 REMARK 470 LYS B 142 CD CE NZ REMARK 470 LYS B 221 CD CE NZ REMARK 470 ASP B 225 OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 111 O HOH A 2265 1655 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 24 -18.11 76.54 REMARK 500 ALA A 26 93.03 -169.44 REMARK 500 ALA A 81 65.75 -153.20 REMARK 500 THR A 82 46.76 39.35 REMARK 500 ALA A 130 -2.95 80.60 REMARK 500 PHE A 193 -164.73 -121.46 REMARK 500 PHE A 193 -164.73 -114.42 REMARK 500 GLU A 194 114.70 -34.02 REMARK 500 HIS B 24 -19.65 80.02 REMARK 500 ALA B 26 94.34 -170.91 REMARK 500 ALA B 81 64.71 -156.64 REMARK 500 ASP B 102 -159.37 -147.59 REMARK 500 PHE B 193 -157.78 -119.13 REMARK 500 GLU B 194 116.76 -36.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 3 LYS A 4 -113.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2041 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B2031 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B2043 DISTANCE = 6.60 ANGSTROMS REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH A 2005 REMARK 615 HOH A 2263 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1235 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 24 NE2 REMARK 620 2 HOH A2261 O 114.2 REMARK 620 3 HOH A2262 O 109.3 108.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1236 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 111 OE1 REMARK 620 2 GLU A 111 OE2 54.8 REMARK 620 3 HIS A 220 NE2 84.7 137.3 REMARK 620 4 HOH A2263 O 82.1 85.3 103.6 REMARK 620 5 HOH A2264 O 106.5 85.3 95.3 159.9 REMARK 620 6 HOH A2265 O 57.4 98.2 64.7 45.6 153.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1235 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 24 NE2 REMARK 620 2 HOH B2264 O 106.0 REMARK 620 3 HOH B2265 O 107.6 114.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1236 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 147 OD2 REMARK 620 2 HIS B 220 NE2 107.1 REMARK 620 3 HOH B2266 O 124.4 103.3 REMARK 620 4 HOH B2267 O 101.4 114.2 107.0 REMARK 620 N 1 2 3 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ASP B1234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ASP A1234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1236 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1236 DBREF 2V25 A -25 233 UNP Q0P9X8 PEB1A_CAMJE 1 259 DBREF 2V25 B -25 233 UNP Q0P9X8 PEB1A_CAMJE 1 259 SEQRES 1 A 259 MET VAL PHE ARG LYS SER LEU LEU LYS LEU ALA VAL PHE SEQRES 2 A 259 ALA LEU GLY ALA CYS VAL ALA PHE SER ASN ALA ASN ALA SEQRES 3 A 259 ALA GLU GLY LYS LEU GLU SER ILE LYS SER LYS GLY GLN SEQRES 4 A 259 LEU ILE VAL GLY VAL LYS ASN ASP VAL PRO HIS TYR ALA SEQRES 5 A 259 LEU LEU ASP GLN ALA THR GLY GLU ILE LYS GLY PHE GLU SEQRES 6 A 259 VAL ASP VAL ALA LYS LEU LEU ALA LYS SER ILE LEU GLY SEQRES 7 A 259 ASP ASP LYS LYS ILE LYS LEU VAL ALA VAL ASN ALA LYS SEQRES 8 A 259 THR ARG GLY PRO LEU LEU ASP ASN GLY SER VAL ASP ALA SEQRES 9 A 259 VAL ILE ALA THR PHE THR ILE THR PRO GLU ARG LYS ARG SEQRES 10 A 259 ILE TYR ASN PHE SER GLU PRO TYR TYR GLN ASP ALA ILE SEQRES 11 A 259 GLY LEU LEU VAL LEU LYS GLU LYS LYS TYR LYS SER LEU SEQRES 12 A 259 ALA ASP MET LYS GLY ALA ASN ILE GLY VAL ALA GLN ALA SEQRES 13 A 259 ALA THR THR LYS LYS ALA ILE GLY GLU ALA ALA LYS LYS SEQRES 14 A 259 ILE GLY ILE ASP VAL LYS PHE SER GLU PHE PRO ASP TYR SEQRES 15 A 259 PRO SER ILE LYS ALA ALA LEU ASP ALA LYS ARG VAL ASP SEQRES 16 A 259 ALA PHE SER VAL ASP LYS SER ILE LEU LEU GLY TYR VAL SEQRES 17 A 259 ASP ASP LYS SER GLU ILE LEU PRO ASP SER PHE GLU PRO SEQRES 18 A 259 GLN SER TYR GLY ILE VAL THR LYS LYS ASP ASP PRO ALA SEQRES 19 A 259 PHE ALA LYS TYR VAL ASP ASP PHE VAL LYS GLU HIS LYS SEQRES 20 A 259 ASN GLU ILE ASP ALA LEU ALA LYS LYS TRP GLY LEU SEQRES 1 B 259 MET VAL PHE ARG LYS SER LEU LEU LYS LEU ALA VAL PHE SEQRES 2 B 259 ALA LEU GLY ALA CYS VAL ALA PHE SER ASN ALA ASN ALA SEQRES 3 B 259 ALA GLU GLY LYS LEU GLU SER ILE LYS SER LYS GLY GLN SEQRES 4 B 259 LEU ILE VAL GLY VAL LYS ASN ASP VAL PRO HIS TYR ALA SEQRES 5 B 259 LEU LEU ASP GLN ALA THR GLY GLU ILE LYS GLY PHE GLU SEQRES 6 B 259 VAL ASP VAL ALA LYS LEU LEU ALA LYS SER ILE LEU GLY SEQRES 7 B 259 ASP ASP LYS LYS ILE LYS LEU VAL ALA VAL ASN ALA LYS SEQRES 8 B 259 THR ARG GLY PRO LEU LEU ASP ASN GLY SER VAL ASP ALA SEQRES 9 B 259 VAL ILE ALA THR PHE THR ILE THR PRO GLU ARG LYS ARG SEQRES 10 B 259 ILE TYR ASN PHE SER GLU PRO TYR TYR GLN ASP ALA ILE SEQRES 11 B 259 GLY LEU LEU VAL LEU LYS GLU LYS LYS TYR LYS SER LEU SEQRES 12 B 259 ALA ASP MET LYS GLY ALA ASN ILE GLY VAL ALA GLN ALA SEQRES 13 B 259 ALA THR THR LYS LYS ALA ILE GLY GLU ALA ALA LYS LYS SEQRES 14 B 259 ILE GLY ILE ASP VAL LYS PHE SER GLU PHE PRO ASP TYR SEQRES 15 B 259 PRO SER ILE LYS ALA ALA LEU ASP ALA LYS ARG VAL ASP SEQRES 16 B 259 ALA PHE SER VAL ASP LYS SER ILE LEU LEU GLY TYR VAL SEQRES 17 B 259 ASP ASP LYS SER GLU ILE LEU PRO ASP SER PHE GLU PRO SEQRES 18 B 259 GLN SER TYR GLY ILE VAL THR LYS LYS ASP ASP PRO ALA SEQRES 19 B 259 PHE ALA LYS TYR VAL ASP ASP PHE VAL LYS GLU HIS LYS SEQRES 20 B 259 ASN GLU ILE ASP ALA LEU ALA LYS LYS TRP GLY LEU HET ASP A1234 9 HET ZN A1235 1 HET ZN A1236 1 HET ASP B1234 9 HET ZN B1235 1 HET ZN B1236 1 HETNAM ASP ASPARTIC ACID HETNAM ZN ZINC ION FORMUL 3 ASP 2(C4 H7 N O4) FORMUL 4 ZN 4(ZN 2+) FORMUL 9 HOH *532(H2 O) HELIX 1 1 GLY A 3 GLY A 12 1 10 HELIX 2 2 GLY A 37 GLY A 52 1 16 HELIX 3 3 THR A 66 ASN A 73 1 8 HELIX 4 4 THR A 86 ARG A 91 1 6 HELIX 5 5 GLU A 111 LYS A 113 5 3 HELIX 6 6 SER A 116 MET A 120 5 5 HELIX 7 7 THR A 132 ILE A 144 1 13 HELIX 8 8 ASP A 155 ALA A 165 1 11 HELIX 9 9 LYS A 175 LEU A 179 1 5 HELIX 10 10 ASP A 206 HIS A 220 1 15 HELIX 11 11 HIS A 220 TRP A 231 1 12 HELIX 12 12 GLY B 3 GLY B 12 1 10 HELIX 13 13 GLY B 37 GLY B 52 1 16 HELIX 14 14 THR B 66 ASN B 73 1 8 HELIX 15 15 THR B 86 ARG B 91 1 6 HELIX 16 16 GLU B 111 LYS B 113 5 3 HELIX 17 17 SER B 116 LYS B 121 5 6 HELIX 18 18 THR B 132 ILE B 144 1 13 HELIX 19 19 ASP B 155 ALA B 165 1 11 HELIX 20 20 LYS B 175 LEU B 179 1 5 HELIX 21 21 ASP B 206 HIS B 220 1 15 HELIX 22 22 HIS B 220 TRP B 231 1 12 SHEET 1 AA 3 ILE A 57 ALA A 61 0 SHEET 2 AA 3 LEU A 14 VAL A 18 1 O LEU A 14 N LYS A 58 SHEET 3 AA 3 ALA A 78 VAL A 79 1 O ALA A 78 N GLY A 17 SHEET 1 AB 3 ASP A 21 VAL A 22 0 SHEET 2 AB 3 ALA A 26 LEU A 28 -1 O ALA A 26 N VAL A 22 SHEET 3 AB 3 ILE A 35 LYS A 36 -1 O LYS A 36 N LEU A 27 SHEET 1 AC 2 TYR A 93 PHE A 95 0 SHEET 2 AC 2 VAL A 201 LYS A 203 -1 O THR A 202 N ASN A 94 SHEET 1 AD 5 LYS A 149 PHE A 153 0 SHEET 2 AD 5 ASN A 124 ALA A 128 1 O ILE A 125 N SER A 151 SHEET 3 AD 5 ALA A 170 ASP A 174 1 O ALA A 170 N GLY A 126 SHEET 4 AD 5 TYR A 100 LEU A 109 -1 O GLY A 105 N VAL A 173 SHEET 5 AD 5 PRO A 195 TYR A 198 -1 O GLN A 196 N ASP A 102 SHEET 1 AE 5 LYS A 149 PHE A 153 0 SHEET 2 AE 5 ASN A 124 ALA A 128 1 O ILE A 125 N SER A 151 SHEET 3 AE 5 ALA A 170 ASP A 174 1 O ALA A 170 N GLY A 126 SHEET 4 AE 5 TYR A 100 LEU A 109 -1 O GLY A 105 N VAL A 173 SHEET 5 AE 5 SER A 186 ILE A 188 -1 O GLU A 187 N VAL A 108 SHEET 1 BA 3 ILE B 57 ALA B 61 0 SHEET 2 BA 3 LEU B 14 VAL B 18 1 O LEU B 14 N LYS B 58 SHEET 3 BA 3 ALA B 78 VAL B 79 1 O ALA B 78 N GLY B 17 SHEET 1 BB 3 ASP B 21 VAL B 22 0 SHEET 2 BB 3 ALA B 26 LEU B 28 -1 O ALA B 26 N VAL B 22 SHEET 3 BB 3 ILE B 35 LYS B 36 -1 O LYS B 36 N LEU B 27 SHEET 1 BC 2 TYR B 93 PHE B 95 0 SHEET 2 BC 2 VAL B 201 LYS B 203 -1 O THR B 202 N ASN B 94 SHEET 1 BD 5 LYS B 149 PHE B 153 0 SHEET 2 BD 5 ASN B 124 ALA B 128 1 O ILE B 125 N SER B 151 SHEET 3 BD 5 ALA B 170 ASP B 174 1 O ALA B 170 N GLY B 126 SHEET 4 BD 5 TYR B 100 LEU B 109 -1 O GLY B 105 N VAL B 173 SHEET 5 BD 5 PRO B 195 TYR B 198 -1 O GLN B 196 N ASP B 102 SHEET 1 BE 5 LYS B 149 PHE B 153 0 SHEET 2 BE 5 ASN B 124 ALA B 128 1 O ILE B 125 N SER B 151 SHEET 3 BE 5 ALA B 170 ASP B 174 1 O ALA B 170 N GLY B 126 SHEET 4 BE 5 TYR B 100 LEU B 109 -1 O GLY B 105 N VAL B 173 SHEET 5 BE 5 SER B 186 ILE B 188 -1 O GLU B 187 N VAL B 108 LINK NE2 HIS A 24 ZN ZN A1235 1555 1555 2.00 LINK OE1 GLU A 111 ZN ZN A1236 1455 1555 2.44 LINK OE2 GLU A 111 ZN ZN A1236 1455 1555 2.30 LINK NE2 HIS A 220 ZN ZN A1236 1555 1555 2.26 LINK ZN ZN A1235 O HOH A2261 1555 1555 2.03 LINK ZN ZN A1235 O HOH A2262 1555 1555 2.19 LINK ZN ZN A1236 O HOH A2263 1555 1555 2.09 LINK ZN ZN A1236 O HOH A2264 1555 1555 2.31 LINK ZN ZN A1236 O HOH A2265 1555 1555 1.94 LINK NE2 HIS B 24 ZN ZN B1235 1555 1555 2.03 LINK OD2 ASP B 147 ZN ZN B1236 1555 1555 1.95 LINK NE2 HIS B 220 ZN ZN B1236 1655 1555 2.08 LINK ZN ZN B1235 O HOH B2264 1555 1555 2.11 LINK ZN ZN B1235 O HOH B2265 1555 1555 2.17 LINK ZN ZN B1236 O HOH B2266 1555 1555 2.24 LINK ZN ZN B1236 O HOH B2267 1555 1555 2.29 SITE 1 AC1 10 LYS B 19 ARG B 67 THR B 82 THR B 84 SITE 2 AC1 10 ARG B 89 ALA B 131 THR B 132 TYR B 156 SITE 3 AC1 10 ASP B 174 ILE B 177 SITE 1 AC2 12 LYS A 19 ALA A 64 ARG A 67 THR A 82 SITE 2 AC2 12 THR A 84 ARG A 89 ALA A 131 THR A 132 SITE 3 AC2 12 TYR A 156 ASP A 174 ILE A 177 HOH A2094 SITE 1 AC3 3 HIS A 24 HOH A2261 HOH A2262 SITE 1 AC4 5 GLU A 111 LYS A 166 HIS A 220 HOH A2264 SITE 2 AC4 5 HOH A2265 SITE 1 AC5 3 HIS B 24 HOH B2264 HOH B2265 SITE 1 AC6 4 ASP B 147 HIS B 220 HOH B2266 HOH B2267 CRYST1 53.272 75.868 61.708 90.00 103.31 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018772 0.000000 0.004441 0.00000 SCALE2 0.000000 0.013181 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016653 0.00000