HEADER OXIDOREDUCTASE 14-JUN-07 2V3B TITLE CRYSTAL STRUCTURE OF THE ELECTRON TRANSFER COMPLEX RUBREDOXIN - TITLE 2 RUBREDOXIN REDUCTASE FROM PSEUDOMONAS AERUGINOSA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RUBREDOXIN REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RUBREDOXIN 2; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: RUBREDOXIN; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 9 ORGANISM_TAXID: 208964; SOURCE 10 STRAIN: PAO1; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALKANE DEGRADATION, IRON-SULFUR PROTEIN, OXIDOREDUCTASE, ELECTRON KEYWDS 2 TRANSFER, ELECTRON TRANSPORT, FAD, NAD, IRON, FLAVOPROTEIN, METAL- KEYWDS 3 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR G.HAGELUEKEN,L.WIEHLMANN,T.M.ADAMS,H.KOLMAR,D.W.HEINZ,B.TUEMMLER,W.- AUTHOR 2 D.SCHUBERT REVDAT 5 13-DEC-23 2V3B 1 LINK REVDAT 4 24-JUL-19 2V3B 1 REMARK REVDAT 3 13-JUL-11 2V3B 1 VERSN REVDAT 2 24-FEB-09 2V3B 1 VERSN REVDAT 1 14-AUG-07 2V3B 0 JRNL AUTH G.HAGELUEKEN,L.WIEHLMANN,T.M.ADAMS,H.KOLMAR,D.W.HEINZ, JRNL AUTH 2 B.TUEMMLER,W.-D.SCHUBERT JRNL TITL CRYSTAL STRUCTURE OF THE ELECTRON TRANSFER COMPLEX JRNL TITL 2 RUBREDOXIN - RUBREDOXIN REDUCTASE FROM PSEUDOMONAS JRNL TITL 3 AERUGINOSA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 12276 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17636129 JRNL DOI 10.1073/PNAS.0702919104 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 97.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 15866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 891 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1115 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3241 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 255 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.310 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.190 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.682 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3649 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4999 ; 1.183 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 485 ; 5.551 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;35.311 ;23.077 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 597 ;14.620 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;13.628 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 543 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2855 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1626 ; 0.183 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2434 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 249 ; 0.117 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 53 ; 0.148 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2384 ; 0.359 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3708 ; 0.613 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1499 ; 0.856 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1288 ; 1.407 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 384 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8658 -20.3676 -7.0462 REMARK 3 T TENSOR REMARK 3 T11: -0.0675 T22: -0.1147 REMARK 3 T33: -0.0995 T12: -0.0155 REMARK 3 T13: 0.0148 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.5868 L22: 0.3188 REMARK 3 L33: 0.5948 L12: -0.4757 REMARK 3 L13: 0.2090 L23: 0.0585 REMARK 3 S TENSOR REMARK 3 S11: -0.0096 S12: -0.0845 S13: -0.0857 REMARK 3 S21: 0.0085 S22: -0.0134 S23: 0.0389 REMARK 3 S31: 0.0787 S32: -0.0666 S33: 0.0229 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 53 REMARK 3 ORIGIN FOR THE GROUP (A): -13.8999 -30.8695 13.6641 REMARK 3 T TENSOR REMARK 3 T11: 0.2124 T22: 0.0787 REMARK 3 T33: 0.1281 T12: -0.0573 REMARK 3 T13: 0.0053 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 4.3771 L22: 2.5772 REMARK 3 L33: 10.9575 L12: -0.1556 REMARK 3 L13: -1.9701 L23: -1.6479 REMARK 3 S TENSOR REMARK 3 S11: -0.0324 S12: -0.5227 S13: -0.2489 REMARK 3 S21: 0.3260 S22: -0.1197 S23: 0.1357 REMARK 3 S31: 0.7676 S32: -0.2646 S33: 0.1522 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2V3B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1290032923. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.741 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19054 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2V3A AND 1BQ8 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M KF, 20% PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.63000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.63000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2104 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 ILE B 54 REMARK 465 ALA B 55 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 87 74.82 -115.75 REMARK 500 GLN A 123 -8.21 -56.99 REMARK 500 ALA A 125 44.17 -72.96 REMARK 500 ALA A 153 25.05 -142.69 REMARK 500 ASN A 256 -98.57 -138.04 REMARK 500 THR A 267 -169.77 -73.04 REMARK 500 THR A 267 -169.77 -74.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B1054 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 6 SG REMARK 620 2 CYS B 9 SG 118.0 REMARK 620 3 CYS B 39 SG 108.0 105.0 REMARK 620 4 CYS B 42 SG 102.9 110.8 112.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A1385 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B1054 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V3A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RUBREDOXIN REDUCTASE FROM PSEUDOMONAS REMARK 900 AERUGINOSA. DBREF 2V3B A 1 384 UNP Q9HTK9 Q9HTK9_PSEAE 1 384 DBREF 2V3B B 1 55 UNP Q9HTK8 Q9HTK8_PSEAE 1 55 SEQRES 1 A 384 MET SER GLU ARG ALA PRO LEU VAL ILE ILE GLY THR GLY SEQRES 2 A 384 LEU ALA GLY TYR ASN LEU ALA ARG GLU TRP ARG LYS LEU SEQRES 3 A 384 ASP GLY GLU THR PRO LEU LEU MET ILE THR ALA ASP ASP SEQRES 4 A 384 GLY ARG SER TYR SER LYS PRO MET LEU SER THR GLY PHE SEQRES 5 A 384 SER LYS ASN LYS ASP ALA ASP GLY LEU ALA MET ALA GLU SEQRES 6 A 384 PRO GLY ALA MET ALA GLU GLN LEU ASN ALA ARG ILE LEU SEQRES 7 A 384 THR HIS THR ARG VAL THR GLY ILE ASP PRO GLY HIS GLN SEQRES 8 A 384 ARG ILE TRP ILE GLY GLU GLU GLU VAL ARG TYR ARG ASP SEQRES 9 A 384 LEU VAL LEU ALA TRP GLY ALA GLU PRO ILE ARG VAL PRO SEQRES 10 A 384 VAL GLU GLY ASP ALA GLN ASP ALA LEU TYR PRO ILE ASN SEQRES 11 A 384 ASP LEU GLU ASP TYR ALA ARG PHE ARG GLN ALA ALA ALA SEQRES 12 A 384 GLY LYS ARG ARG VAL LEU LEU LEU GLY ALA GLY LEU ILE SEQRES 13 A 384 GLY CYS GLU PHE ALA ASN ASP LEU SER SER GLY GLY TYR SEQRES 14 A 384 GLN LEU ASP VAL VAL ALA PRO CYS GLU GLN VAL MET PRO SEQRES 15 A 384 GLY LEU LEU HIS PRO ALA ALA ALA LYS ALA VAL GLN ALA SEQRES 16 A 384 GLY LEU GLU GLY LEU GLY VAL ARG PHE HIS LEU GLY PRO SEQRES 17 A 384 VAL LEU ALA SER LEU LYS LYS ALA GLY GLU GLY LEU GLU SEQRES 18 A 384 ALA HIS LEU SER ASP GLY GLU VAL ILE PRO CYS ASP LEU SEQRES 19 A 384 VAL VAL SER ALA VAL GLY LEU ARG PRO ARG THR GLU LEU SEQRES 20 A 384 ALA PHE ALA ALA GLY LEU ALA VAL ASN ARG GLY ILE VAL SEQRES 21 A 384 VAL ASP ARG SER LEU ARG THR SER HIS ALA ASN ILE TYR SEQRES 22 A 384 ALA LEU GLY ASP CYS ALA GLU VAL ASP GLY LEU ASN LEU SEQRES 23 A 384 LEU TYR VAL MET PRO LEU MET ALA CYS ALA ARG ALA LEU SEQRES 24 A 384 ALA GLN THR LEU ALA GLY ASN PRO SER GLN VAL ALA TYR SEQRES 25 A 384 GLY PRO MET PRO VAL THR VAL LYS THR PRO ALA CYS PRO SEQRES 26 A 384 LEU VAL VAL SER PRO PRO PRO ARG GLY MET ASP GLY GLN SEQRES 27 A 384 TRP LEU VAL GLU GLY SER GLY THR ASP LEU LYS VAL LEU SEQRES 28 A 384 CYS ARG ASP THR ALA GLY ARG VAL ILE GLY TYR ALA LEU SEQRES 29 A 384 THR GLY ALA ALA VAL ASN GLU LYS LEU ALA LEU ASN LYS SEQRES 30 A 384 GLU LEU PRO GLY LEU MET ALA SEQRES 1 B 55 MET ARG LYS TRP GLN CYS VAL VAL CYS GLY PHE ILE TYR SEQRES 2 B 55 ASP GLU ALA LEU GLY LEU PRO GLU GLU GLY ILE PRO ALA SEQRES 3 B 55 GLY THR ARG TRP GLU ASP ILE PRO ALA ASP TRP VAL CYS SEQRES 4 B 55 PRO ASP CYS GLY VAL GLY LYS ILE ASP PHE GLU MET ILE SEQRES 5 B 55 GLU ILE ALA HET FAD A1385 53 HET FE B1054 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM FE FE (III) ION FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 FE FE 3+ FORMUL 5 HOH *255(H2 O) HELIX 1 1 GLY A 13 LYS A 25 1 13 HELIX 2 2 SER A 44 GLY A 51 5 8 HELIX 3 3 ASP A 57 ALA A 62 1 6 HELIX 4 4 GLU A 65 LEU A 73 1 9 HELIX 5 5 PRO A 88 HIS A 90 5 3 HELIX 6 6 ASP A 131 ALA A 143 1 13 HELIX 7 7 GLY A 154 GLY A 167 1 14 HELIX 8 8 HIS A 186 LEU A 200 1 15 HELIX 9 9 THR A 245 ALA A 251 1 7 HELIX 10 10 TYR A 288 ALA A 304 1 17 HELIX 11 11 ALA A 367 ASN A 370 5 4 HELIX 12 12 GLU A 371 LEU A 379 1 9 HELIX 13 13 ARG B 29 ILE B 33 5 5 HELIX 14 14 GLY B 45 ILE B 47 5 3 SHEET 1 AA 5 ARG A 76 LEU A 78 0 SHEET 2 AA 5 LEU A 32 ILE A 35 1 O LEU A 32 N ARG A 76 SHEET 3 AA 5 LEU A 7 ILE A 10 1 O LEU A 7 N LEU A 33 SHEET 4 AA 5 ASP A 104 LEU A 107 1 O ASP A 104 N VAL A 8 SHEET 5 AA 5 ILE A 272 ALA A 274 1 O TYR A 273 N LEU A 107 SHEET 1 AB 3 GLY A 85 ASP A 87 0 SHEET 2 AB 3 ARG A 92 ILE A 95 -1 O ARG A 92 N ASP A 87 SHEET 3 AB 3 GLU A 98 ARG A 101 -1 O GLU A 98 N ILE A 95 SHEET 1 AC 2 ALA A 111 PRO A 113 0 SHEET 2 AC 2 LEU A 241 PRO A 243 -1 O ARG A 242 N GLU A 112 SHEET 1 AD 5 LEU A 126 PRO A 128 0 SHEET 2 AD 5 LEU A 234 SER A 237 1 O VAL A 235 N TYR A 127 SHEET 3 AD 5 ARG A 147 LEU A 151 1 O LEU A 149 N VAL A 236 SHEET 4 AD 5 GLN A 170 ALA A 175 1 O GLN A 170 N VAL A 148 SHEET 5 AD 5 ARG A 203 LEU A 206 1 O ARG A 203 N VAL A 173 SHEET 1 AE 3 LEU A 210 ALA A 216 0 SHEET 2 AE 3 GLY A 219 LEU A 224 -1 O GLY A 219 N ALA A 216 SHEET 3 AE 3 VAL A 229 CYS A 232 -1 O ILE A 230 N ALA A 222 SHEET 1 AF 2 ILE A 259 VAL A 261 0 SHEET 2 AF 2 ALA A 279 VAL A 281 1 O GLU A 280 N VAL A 261 SHEET 1 AG 5 VAL A 317 VAL A 319 0 SHEET 2 AG 5 LEU A 326 SER A 329 -1 O LEU A 326 N VAL A 319 SHEET 3 AG 5 VAL A 359 THR A 365 -1 O TYR A 362 N SER A 329 SHEET 4 AG 5 ASP A 347 ARG A 353 -1 O LEU A 348 N THR A 365 SHEET 5 AG 5 GLN A 338 SER A 344 -1 O GLN A 338 N ARG A 353 SHEET 1 BA 3 ILE B 12 ASP B 14 0 SHEET 2 BA 3 LYS B 3 CYS B 6 -1 O TRP B 4 N TYR B 13 SHEET 3 BA 3 PHE B 49 MET B 51 -1 O GLU B 50 N GLN B 5 LINK SG CYS B 6 FE FE B1054 1555 1555 2.49 LINK SG CYS B 9 FE FE B1054 1555 1555 2.37 LINK SG CYS B 39 FE FE B1054 1555 1555 2.26 LINK SG CYS B 42 FE FE B1054 1555 1555 2.30 CISPEP 1 GLU B 22 GLY B 23 0 2.73 CISPEP 2 GLU B 22 GLY B 23 0 5.95 SITE 1 AC1 38 ILE A 10 GLY A 11 THR A 12 GLY A 13 SITE 2 AC1 38 LEU A 14 ALA A 15 THR A 36 ALA A 37 SITE 3 AC1 38 ASP A 38 LYS A 45 PRO A 46 THR A 81 SITE 4 AC1 38 ARG A 82 VAL A 83 ALA A 108 TRP A 109 SITE 5 AC1 38 GLY A 110 ILE A 156 GLU A 159 PHE A 160 SITE 6 AC1 38 GLY A 276 ASP A 277 LEU A 287 TYR A 288 SITE 7 AC1 38 VAL A 289 LEU A 292 LYS A 320 HOH A2019 SITE 8 AC1 38 HOH A2026 HOH A2189 HOH A2213 HOH A2233 SITE 9 AC1 38 HOH A2234 HOH A2236 HOH A2237 HOH A2238 SITE 10 AC1 38 HOH A2239 HOH B2013 SITE 1 AC2 4 CYS B 6 CYS B 9 CYS B 39 CYS B 42 CRYST1 61.070 97.150 81.260 90.00 90.00 90.00 P 2 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016375 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010293 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012306 0.00000