data_2V3L # _entry.id 2V3L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2V3L pdb_00002v3l 10.2210/pdb2v3l/pdb PDBE EBI-32947 ? ? WWPDB D_1290032947 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-10-09 2 'Structure model' 1 1 2017-04-19 3 'Structure model' 1 2 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Other 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2V3L _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-06-18 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Neubauer, H.' 1 'Gaiko, N.' 2 'Berger, S.' 3 'Schaffer, J.' 4 'Eggeling, C.' 5 'Tuma, J.' 6 'Verdier, L.' 7 'Seidel, C.A.M.' 8 'Griesinger, C.' 9 'Volkmer, A.' 10 # _citation.id primary _citation.title ;Orientational and Dynamical Heterogeneity of Rhodamine 6G Terminally Attached to a DNA Helix Revealed by NMR and Single-Molecule Fluorescence Spectroscopy. ; _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 129 _citation.page_first 12746 _citation.page_last ? _citation.year 2007 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17900110 _citation.pdbx_database_id_DOI 10.1021/JA0722574 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Neubauer, H.' 1 ? primary 'Gaiko, N.' 2 ? primary 'Berger, S.' 3 ? primary 'Schaffer, J.' 4 ? primary 'Eggeling, C.' 5 ? primary 'Tuma, J.' 6 ? primary 'Verdier, L.' 7 ? primary 'Seidel, C.A.' 8 ? primary 'Griesinger, C.' 9 ? primary 'Volkmer, A.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;5'-D(*GP*AP*AP*TP*GP*GP*CP*GP*AP*AP *TP*GP*GP*CP*GP*CP*TP*TP*TP*G)-3' ; 6230.025 1 ? ? ? ? 2 polymer syn ;5'-D(*CP*AP*AP*AP*GP*CP*GP*CP*CP*AP *TP*TP*CP*GP*CP*CP*AP*TP*TP*C)-3' ; 6038.919 1 ? ? ? ? 3 non-polymer syn 'RHODAMINE 6G' 559.696 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DA)(DA)(DT)(DG)(DG)(DC)(DG)(DA)(DA)(DT)(DG)(DG)(DC)(DG)(DC)(DT)(DT)(DT)(DG)' GAATGGCGAATGGCGCTTTG A ? 2 polydeoxyribonucleotide no no '(DC)(DA)(DA)(DA)(DG)(DC)(DG)(DC)(DC)(DA)(DT)(DT)(DC)(DG)(DC)(DC)(DA)(DT)(DT)(DC)' CAAAGCGCCATTCGCCATTC B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'RHODAMINE 6G' _pdbx_entity_nonpoly.comp_id R6G # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DA n 1 3 DA n 1 4 DT n 1 5 DG n 1 6 DG n 1 7 DC n 1 8 DG n 1 9 DA n 1 10 DA n 1 11 DT n 1 12 DG n 1 13 DG n 1 14 DC n 1 15 DG n 1 16 DC n 1 17 DT n 1 18 DT n 1 19 DT n 1 20 DG n 2 1 DC n 2 2 DA n 2 3 DA n 2 4 DA n 2 5 DG n 2 6 DC n 2 7 DG n 2 8 DC n 2 9 DC n 2 10 DA n 2 11 DT n 2 12 DT n 2 13 DC n 2 14 DG n 2 15 DC n 2 16 DC n 2 17 DA n 2 18 DT n 2 19 DT n 2 20 DC n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'synthetic construct' ? 32630 ? 2 1 sample ? ? 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 R6G non-polymer . 'RHODAMINE 6G' ? 'C33 H41 N3 O5' 559.696 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DA 9 9 9 DA DA A . n A 1 10 DA 10 10 10 DA DA A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DG 12 12 12 DG DG A . n A 1 13 DG 13 13 13 DG DG A . n A 1 14 DC 14 14 14 DC DC A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DC 16 16 16 DC DC A . n A 1 17 DT 17 17 17 DT DT A . n A 1 18 DT 18 18 18 DT DT A . n A 1 19 DT 19 19 19 DT DT A . n A 1 20 DG 20 20 20 DG DG A . n B 2 1 DC 1 22 22 DC DC B . n B 2 2 DA 2 23 23 DA DA B . n B 2 3 DA 3 24 24 DA DA B . n B 2 4 DA 4 25 25 DA DA B . n B 2 5 DG 5 26 26 DG DG B . n B 2 6 DC 6 27 27 DC DC B . n B 2 7 DG 7 28 28 DG DG B . n B 2 8 DC 8 29 29 DC DC B . n B 2 9 DC 9 30 30 DC DC B . n B 2 10 DA 10 31 31 DA DA B . n B 2 11 DT 11 32 32 DT DT B . n B 2 12 DT 12 33 33 DT DT B . n B 2 13 DC 13 34 34 DC DC B . n B 2 14 DG 14 35 35 DG DG B . n B 2 15 DC 15 36 36 DC DC B . n B 2 16 DC 16 37 37 DC DC B . n B 2 17 DA 17 38 38 DA DA B . n B 2 18 DT 18 39 39 DT DT B . n B 2 19 DT 19 40 40 DT DT B . n B 2 20 DC 20 41 41 DC DC B . n # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id R6G _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 21 _pdbx_nonpoly_scheme.auth_seq_num 21 _pdbx_nonpoly_scheme.pdb_mon_id R6G _pdbx_nonpoly_scheme.auth_mon_id R6G _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.pdb_ins_code . # _cell.entry_id 2V3L _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V3L _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 2V3L _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 2V3L _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2V3L _struct.title 'Orientational and dynamical heterogeneity of Rhodamine 6G terminally attached to a DNA helix' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2V3L _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, NUCLEIC ACID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2V3L 1 ? ? 2V3L ? 2 PDB 2V3L 2 ? ? 2V3L ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2V3L A 1 ? 20 ? 2V3L 1 ? 20 ? 1 20 2 2 2V3L B 1 ? 20 ? 2V3L 22 ? 41 ? 22 41 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? C R6G . O ? ? ? 1_555 B DC 1 P ? ? B R6G 21 B DC 22 1_555 ? ? ? ? ? ? ? 1.611 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 20 N3 ? ? A DG 1 B DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 20 O2 ? ? A DG 1 B DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 20 N4 ? ? A DG 1 B DC 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 19 N3 ? ? A DA 2 B DT 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 19 O4 ? ? A DA 2 B DT 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 17 N1 ? ? A DT 4 B DA 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 17 N6 ? ? A DT 4 B DA 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 16 N3 ? ? A DG 5 B DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 16 O2 ? ? A DG 5 B DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 16 N4 ? ? A DG 5 B DC 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 15 N3 ? ? A DG 6 B DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 15 O2 ? ? A DG 6 B DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 15 N4 ? ? A DG 6 B DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 14 N1 ? ? A DC 7 B DG 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 14 O6 ? ? A DC 7 B DG 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 14 N2 ? ? A DC 7 B DG 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 13 N3 ? ? A DG 8 B DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 13 O2 ? ? A DG 8 B DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 13 N4 ? ? A DG 8 B DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 12 N3 ? ? A DA 9 B DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 12 O4 ? ? A DA 9 B DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 11 B DA 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 11 B DA 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 12 B DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 12 B DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 12 B DC 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 13 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 13 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 13 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 13 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 13 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 13 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 14 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 14 B DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 14 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 14 B DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 14 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 14 B DG 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 15 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 15 B DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DG 15 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 15 B DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 15 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 15 B DC 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 16 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 16 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 16 B DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DT 17 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 17 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DT 17 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 17 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DT 18 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 18 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DT 18 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 18 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DT 19 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 19 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DT 19 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 19 B DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DG 20 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 20 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DG 20 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 20 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DG 20 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 20 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id R6G _struct_site.pdbx_auth_seq_id 21 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE R6G B 21' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 DG A 20 ? DG A 20 . ? 1_555 ? 2 AC1 2 DC B 1 ? DC B 22 . ? 1_555 ? # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C11 ? B R6G 21 ? PLANAR . 2 2 C11 ? B R6G 21 ? PLANAR . # _pdbx_nmr_ensemble.entry_id 2V3L _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 2 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents 'SOLVED IN WATER WITH 100 MM NACL, 20 MM NA2HPO4/NAH2PO4' _pdbx_nmr_sample_details.solvent_system ? # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298.0 _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100 _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.temperature_units K _pdbx_nmr_exptl_sample_conditions.label ? # _pdbx_nmr_details.entry_id 2V3L _pdbx_nmr_details.text NONE # _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name CNS _pdbx_nmr_software.version ? _pdbx_nmr_software.authors 'BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE,SIMONSON,WARREN' _pdbx_nmr_software.ordinal 1 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 2 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id B _pdbx_unobs_or_zero_occ_residues.auth_comp_id DC _pdbx_unobs_or_zero_occ_residues.auth_seq_id 41 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id B _pdbx_unobs_or_zero_occ_residues.label_comp_id DC _pdbx_unobs_or_zero_occ_residues.label_seq_id 20 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 R6G C C N N 144 R6G O O N N 145 R6G N N N N 146 R6G N1 N N N 147 R6G C1 C Y N 148 R6G C2 C Y N 149 R6G C3 C Y N 150 R6G C4 C Y N 151 R6G C5 C Y N 152 R6G C6 C Y N 153 R6G C7 C N N 154 R6G C8 C N N 155 R6G C9 C N N 156 R6G O1 O N N 157 R6G C10 C N N 158 R6G C11 C N R 159 R6G C12 C N N 160 R6G C13 C N N 161 R6G C14 C Y N 162 R6G C15 C Y N 163 R6G C16 C Y N 164 R6G C17 C Y N 165 R6G C18 C Y N 166 R6G C19 C Y N 167 R6G C20 C N N 168 R6G C21 C N N 169 R6G C22 C N N 170 R6G O2 O N N 171 R6G O3 O N N 172 R6G C23 C N N 173 R6G O4 O N N 174 R6G N2 N N N 175 R6G C24 C N N 176 R6G C25 C N N 177 R6G C26 C N N 178 R6G C27 C N N 179 R6G C28 C N N 180 R6G C29 C N N 181 R6G C30 C N N 182 R6G C31 C N N 183 R6G C32 C N N 184 R6G HC1 H N N 185 R6G HC2 H N N 186 R6G H281 H N N 187 R6G H282 H N N 188 R6G H H N N 189 R6G H311 H N N 190 R6G H312 H N N 191 R6G H1 H N N 192 R6G H291 H N N 193 R6G H292 H N N 194 R6G HA H N N 195 R6G H4 H N N 196 R6G H211 H N N 197 R6G H212 H N N 198 R6G H213 H N N 199 R6G H13 H N N 200 R6G H10 H N N 201 R6G H201 H N N 202 R6G H202 H N N 203 R6G H203 H N N 204 R6G H15 H N N 205 R6G H16 H N N 206 R6G H18 H N N 207 R6G H2 H N N 208 R6G HB H N N 209 R6G H241 H N N 210 R6G H242 H N N 211 R6G H251 H N N 212 R6G H252 H N N 213 R6G H261 H N N 214 R6G H262 H N N 215 R6G H271 H N N 216 R6G H272 H N N 217 R6G H301 H N N 218 R6G H302 H N N 219 R6G H303 H N N 220 R6G H321 H N N 221 R6G H322 H N N 222 R6G H323 H N N 223 R6G HO1 H N N 224 R6G H11 H N N 225 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 R6G C O sing N N 150 R6G C C28 sing N N 151 R6G C HC1 sing N N 152 R6G C HC2 sing N N 153 R6G O HO1 sing N N 154 R6G N C6 sing N N 155 R6G N C31 sing N N 156 R6G N H sing N N 157 R6G N1 C11 sing N N 158 R6G N1 C29 sing N N 159 R6G N1 H1 sing N N 160 R6G C1 C2 doub Y N 161 R6G C1 C6 sing Y N 162 R6G C1 HA sing N N 163 R6G C2 C3 sing Y N 164 R6G C2 O1 sing N N 165 R6G C3 C4 doub Y N 166 R6G C3 C7 sing N N 167 R6G C4 C5 sing Y N 168 R6G C4 H4 sing N N 169 R6G C5 C6 doub Y N 170 R6G C5 C21 sing N N 171 R6G C7 C8 doub N N 172 R6G C7 C14 sing N N 173 R6G C8 C9 sing N N 174 R6G C8 C13 sing N N 175 R6G C9 O1 sing N N 176 R6G C9 C10 doub N N 177 R6G C10 C11 sing N N 178 R6G C10 H10 sing N N 179 R6G C11 H11 sing N N 180 R6G C11 C12 sing N N 181 R6G C12 C13 doub N N 182 R6G C12 C20 sing N N 183 R6G C13 H13 sing N N 184 R6G C14 C15 sing Y N 185 R6G C14 C19 doub Y N 186 R6G C15 C16 doub Y N 187 R6G C15 H15 sing N N 188 R6G C16 C17 sing Y N 189 R6G C16 H16 sing N N 190 R6G C17 C18 doub Y N 191 R6G C17 C23 sing N N 192 R6G C18 C19 sing Y N 193 R6G C18 H18 sing N N 194 R6G C19 C22 sing N N 195 R6G C20 H201 sing N N 196 R6G C20 H202 sing N N 197 R6G C20 H203 sing N N 198 R6G C21 H211 sing N N 199 R6G C21 H212 sing N N 200 R6G C21 H213 sing N N 201 R6G C22 O2 sing N N 202 R6G C22 O3 doub N N 203 R6G O2 H2 sing N N 204 R6G C23 O4 doub N N 205 R6G C23 N2 sing N N 206 R6G N2 C24 sing N N 207 R6G N2 HB sing N N 208 R6G C24 C25 sing N N 209 R6G C24 H241 sing N N 210 R6G C24 H242 sing N N 211 R6G C25 C26 sing N N 212 R6G C25 H251 sing N N 213 R6G C25 H252 sing N N 214 R6G C26 C27 sing N N 215 R6G C26 H261 sing N N 216 R6G C26 H262 sing N N 217 R6G C27 C28 sing N N 218 R6G C27 H271 sing N N 219 R6G C27 H272 sing N N 220 R6G C28 H281 sing N N 221 R6G C28 H282 sing N N 222 R6G C29 C30 sing N N 223 R6G C29 H291 sing N N 224 R6G C29 H292 sing N N 225 R6G C30 H301 sing N N 226 R6G C30 H302 sing N N 227 R6G C30 H303 sing N N 228 R6G C31 C32 sing N N 229 R6G C31 H311 sing N N 230 R6G C31 H312 sing N N 231 R6G C32 H321 sing N N 232 R6G C32 H322 sing N N 233 R6G C32 H323 sing N N 234 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2V3L 'double helix' 2V3L 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 20 1_555 0.018 0.270 0.004 -0.138 0.075 -1.543 1 A_DG1:DC41_B A 1 ? B 41 ? 19 1 1 A DA 2 1_555 B DT 19 1_555 1.486 0.260 0.005 0.389 0.178 -8.501 2 A_DA2:DT40_B A 2 ? B 40 ? 20 1 1 A DT 4 1_555 B DA 17 1_555 1.131 0.255 0.013 -0.295 0.149 -2.396 3 A_DT4:DA38_B A 4 ? B 38 ? 20 1 1 A DG 5 1_555 B DC 16 1_555 0.596 0.271 0.000 0.060 -0.321 0.184 4 A_DG5:DC37_B A 5 ? B 37 ? 19 1 1 A DG 6 1_555 B DC 15 1_555 -0.189 -0.081 0.003 0.003 -0.036 1.209 5 A_DG6:DC36_B A 6 ? B 36 ? 19 1 1 A DC 7 1_555 B DG 14 1_555 1.155 -0.105 -0.013 0.305 -0.080 -2.561 6 A_DC7:DG35_B A 7 ? B 35 ? 19 1 1 A DG 8 1_555 B DC 13 1_555 0.460 0.256 0.003 -0.290 0.071 -0.432 7 A_DG8:DC34_B A 8 ? B 34 ? 19 1 1 A DA 9 1_555 B DT 12 1_555 -0.435 0.299 0.015 -0.381 -0.385 2.122 8 A_DA9:DT33_B A 9 ? B 33 ? 20 1 1 A DT 11 1_555 B DA 10 1_555 0.913 0.188 -0.010 0.495 -0.325 -2.917 9 A_DT11:DA31_B A 11 ? B 31 ? 20 1 1 A DG 12 1_555 B DC 9 1_555 0.654 0.291 0.002 0.000 -0.149 -1.570 10 A_DG12:DC30_B A 12 ? B 30 ? 19 1 1 A DG 13 1_555 B DC 8 1_555 0.173 0.308 0.006 -0.487 -0.053 -1.270 11 A_DG13:DC29_B A 13 ? B 29 ? 19 1 1 A DC 14 1_555 B DG 7 1_555 1.415 -0.380 -0.039 1.129 -0.071 -6.792 12 A_DC14:DG28_B A 14 ? B 28 ? 19 1 1 A DG 15 1_555 B DC 6 1_555 0.664 0.334 0.011 -0.734 0.224 -3.650 13 A_DG15:DC27_B A 15 ? B 27 ? 19 1 1 A DC 16 1_555 B DG 5 1_555 1.527 -0.406 -0.018 0.701 -0.155 -6.841 14 A_DC16:DG26_B A 16 ? B 26 ? 19 1 1 A DT 17 1_555 B DA 4 1_555 -0.511 0.638 0.017 -0.602 0.250 4.288 15 A_DT17:DA25_B A 17 ? B 25 ? 20 1 1 A DT 18 1_555 B DA 3 1_555 1.229 0.368 0.003 -0.075 0.256 -3.279 16 A_DT18:DA24_B A 18 ? B 24 ? 20 1 1 A DT 19 1_555 B DA 2 1_555 0.167 0.297 -0.001 0.193 -0.512 0.158 17 A_DT19:DA23_B A 19 ? B 23 ? 20 1 1 A DG 20 1_555 B DC 1 1_555 -0.889 -0.166 0.001 0.177 0.323 -0.566 18 A_DG20:DC22_B A 20 ? B 22 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 20 1_555 A DA 2 1_555 B DT 19 1_555 -0.615 -0.526 3.343 -1.456 -3.721 40.032 -0.330 0.724 3.396 -5.419 2.121 40.223 1 AA_DG1DA2:DT40DC41_BB A 1 ? B 41 ? A 2 ? B 40 ? 1 A DA 2 1_555 B DT 19 1_555 A DT 4 1_555 B DA 17 1_555 0.116 -1.345 6.669 -2.058 -6.966 68.475 -0.661 -0.259 6.757 -6.173 1.824 68.812 2 AA_DA2DT4:DA38DT40_BB A 2 ? B 40 ? A 4 ? B 38 ? 1 A DT 4 1_555 B DA 17 1_555 A DG 5 1_555 B DC 16 1_555 0.255 -0.686 3.341 -1.249 -3.399 33.912 -0.613 -0.639 3.381 -5.807 2.133 34.099 3 AA_DT4DG5:DC37DA38_BB A 4 ? B 38 ? A 5 ? B 37 ? 1 A DG 5 1_555 B DC 16 1_555 A DG 6 1_555 B DC 15 1_555 0.374 -0.265 3.350 -1.053 -3.844 35.281 0.143 -0.771 3.347 -6.317 1.731 35.498 4 AA_DG5DG6:DC36DC37_BB A 5 ? B 37 ? A 6 ? B 36 ? 1 A DG 6 1_555 B DC 15 1_555 A DC 7 1_555 B DG 14 1_555 -0.584 -0.428 3.363 -1.415 -3.687 39.589 -0.185 0.688 3.406 -5.427 2.083 39.777 5 AA_DG6DC7:DG35DC36_BB A 6 ? B 36 ? A 7 ? B 35 ? 1 A DC 7 1_555 B DG 14 1_555 A DG 8 1_555 B DC 13 1_555 0.160 -0.789 3.326 -0.788 -3.804 32.820 -0.724 -0.419 3.389 -6.704 1.389 33.043 6 AA_DC7DG8:DC34DG35_BB A 7 ? B 35 ? A 8 ? B 34 ? 1 A DG 8 1_555 B DC 13 1_555 A DA 9 1_555 B DT 12 1_555 0.497 -0.288 3.356 -1.069 -3.373 35.290 0.035 -0.978 3.352 -5.547 1.759 35.461 7 AA_DG8DA9:DT33DC34_BB A 8 ? B 34 ? A 9 ? B 33 ? 1 A DA 9 1_555 B DT 12 1_555 A DT 11 1_555 B DA 10 1_555 -0.538 -0.717 6.749 -2.691 -7.100 74.050 -0.134 0.271 6.799 -5.880 2.229 74.383 8 AA_DA9DT11:DA31DT33_BB A 9 ? B 33 ? A 11 ? B 31 ? 1 A DT 11 1_555 B DA 10 1_555 A DG 12 1_555 B DC 9 1_555 0.104 -0.715 3.327 -0.927 -3.807 34.504 -0.599 -0.320 3.381 -6.392 1.556 34.719 9 AA_DT11DG12:DC30DA31_BB A 11 ? B 31 ? A 12 ? B 30 ? 1 A DG 12 1_555 B DC 9 1_555 A DG 13 1_555 B DC 8 1_555 0.285 -0.498 3.348 -0.903 -3.655 35.660 -0.269 -0.597 3.373 -5.947 1.469 35.852 10 AA_DG12DG13:DC29DC30_BB A 12 ? B 30 ? A 13 ? B 29 ? 1 A DG 13 1_555 B DC 8 1_555 A DC 14 1_555 B DG 7 1_555 -0.517 -0.233 3.365 -2.116 -3.723 40.461 0.092 0.501 3.394 -5.365 3.049 40.678 11 AA_DG13DC14:DG28DC29_BB A 13 ? B 29 ? A 14 ? B 28 ? 1 A DC 14 1_555 B DG 7 1_555 A DG 15 1_555 B DC 6 1_555 0.146 -1.018 3.304 -0.301 -3.869 32.324 -1.122 -0.314 3.398 -6.919 0.537 32.550 12 AA_DC14DG15:DC27DG28_BB A 14 ? B 28 ? A 15 ? B 27 ? 1 A DG 15 1_555 B DC 6 1_555 A DC 16 1_555 B DG 5 1_555 -0.343 -0.295 3.350 -2.051 -3.429 39.289 -0.020 0.259 3.376 -5.084 3.040 39.483 13 AA_DG15DC16:DG26DC27_BB A 15 ? B 27 ? A 16 ? B 26 ? 1 A DC 16 1_555 B DG 5 1_555 A DT 17 1_555 B DA 4 1_555 0.828 -0.948 3.332 -0.487 -3.971 28.951 -0.986 -1.752 3.414 -7.894 0.969 29.220 14 AA_DC16DT17:DA25DG26_BB A 16 ? B 26 ? A 17 ? B 25 ? 1 A DT 17 1_555 B DA 4 1_555 A DT 18 1_555 B DA 3 1_555 -0.706 -0.342 3.364 -1.214 -3.586 39.601 -0.071 0.892 3.400 -5.279 1.787 39.774 15 AA_DT17DT18:DA24DA25_BB A 17 ? B 25 ? A 18 ? B 24 ? 1 A DT 18 1_555 B DA 3 1_555 A DT 19 1_555 B DA 2 1_555 0.527 -0.530 3.345 -1.297 -3.344 34.059 -0.360 -1.105 3.358 -5.690 2.207 34.242 16 AA_DT18DT19:DA23DA24_BB A 18 ? B 24 ? A 19 ? B 23 ? 1 A DT 19 1_555 B DA 2 1_555 A DG 20 1_555 B DC 1 1_555 0.500 -0.864 3.493 0.789 7.702 30.635 -3.074 -0.766 3.197 14.292 -1.464 31.576 17 AA_DT19DG20:DC22DA23_BB A 19 ? B 23 ? A 20 ? B 22 ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _atom_sites.entry_id 2V3L _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_