data_2V3U # _entry.id 2V3U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2V3U pdb_00002v3u 10.2210/pdb2v3u/pdb PDBE EBI-32785 ? ? WWPDB D_1290032785 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2V3T _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'STRUCTURE OF THE LIGAND-BINDING CORE OF THE IONOTROPIC GLUTAMATE RECEPTOR-LIKE GLURDELTA2 IN THE APO FORM' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2V3U _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-06-22 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Naur, P.' 1 'Vestergaard, B.' 2 'Gajhede, M.' 3 'Kastrup, J.S.' 4 # _citation.id primary _citation.title 'Ionotropic Glutamate-Like Receptor {Delta}2 Binds D-Serine and Glycine.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 104 _citation.page_first 14116 _citation.page_last ? _citation.year 2007 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17715062 _citation.pdbx_database_id_DOI 10.1073/PNAS.0703718104 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Naur, P.' 1 ? primary 'Hansen, K.B.' 2 ? primary 'Kristensen, A.S.' 3 ? primary 'Dravid, S.M.' 4 ? primary 'Pickering, D.S.' 5 ? primary 'Olsen, L.' 6 ? primary 'Vestergaard, B.' 7 ? primary 'Egebjerg, J.' 8 ? primary 'Gajhede, M.' 9 ? primary 'Traynelis, S.F.' 10 ? primary 'Kastrup, J.S.' 11 ? # _cell.entry_id 2V3U _cell.length_a 36.801 _cell.length_b 40.307 _cell.length_c 44.393 _cell.angle_alpha 66.88 _cell.angle_beta 79.31 _cell.angle_gamma 86.46 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V3U _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GLUTAMATE RECEPTOR DELTA-2 SUBUNIT' 29937.670 1 ? ? 'LIGAND-BINDING CORE, RESIDUES 440-551,664-813' ? 2 non-polymer syn D-SERINE 105.093 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 non-polymer syn 'THIOCYANATE ION' 58.082 2 ? ? ? ? 6 water nat water 18.015 135 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'GLURDELTA2, GLUR DELTA-2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGVVLRVVTVLEEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKRAD IGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQSLQDLSKQTDIPYGTVLDSAVYQHVRMKGLNPFERDSMYSQM WRMINRSNGSENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRI LELQQSGDMDILKHKWWPKNGQCDL ; _entity_poly.pdbx_seq_one_letter_code_can ;GGVVLRVVTVLEEPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKRAD IGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQSLQDLSKQTDIPYGTVLDSAVYQHVRMKGLNPFERDSMYSQM WRMINRSNGSENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRI LELQQSGDMDILKHKWWPKNGQCDL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 VAL n 1 4 VAL n 1 5 LEU n 1 6 ARG n 1 7 VAL n 1 8 VAL n 1 9 THR n 1 10 VAL n 1 11 LEU n 1 12 GLU n 1 13 GLU n 1 14 PRO n 1 15 PHE n 1 16 VAL n 1 17 MET n 1 18 VAL n 1 19 SER n 1 20 GLU n 1 21 ASN n 1 22 VAL n 1 23 LEU n 1 24 GLY n 1 25 LYS n 1 26 PRO n 1 27 LYS n 1 28 LYS n 1 29 TYR n 1 30 GLN n 1 31 GLY n 1 32 PHE n 1 33 SER n 1 34 ILE n 1 35 ASP n 1 36 VAL n 1 37 LEU n 1 38 ASP n 1 39 ALA n 1 40 LEU n 1 41 SER n 1 42 ASN n 1 43 TYR n 1 44 LEU n 1 45 GLY n 1 46 PHE n 1 47 ASN n 1 48 TYR n 1 49 GLU n 1 50 ILE n 1 51 TYR n 1 52 VAL n 1 53 ALA n 1 54 PRO n 1 55 ASP n 1 56 HIS n 1 57 LYS n 1 58 TYR n 1 59 GLY n 1 60 SER n 1 61 PRO n 1 62 GLN n 1 63 GLU n 1 64 ASP n 1 65 GLY n 1 66 THR n 1 67 TRP n 1 68 ASN n 1 69 GLY n 1 70 LEU n 1 71 VAL n 1 72 GLY n 1 73 GLU n 1 74 LEU n 1 75 VAL n 1 76 PHE n 1 77 LYS n 1 78 ARG n 1 79 ALA n 1 80 ASP n 1 81 ILE n 1 82 GLY n 1 83 ILE n 1 84 SER n 1 85 ALA n 1 86 LEU n 1 87 THR n 1 88 ILE n 1 89 THR n 1 90 PRO n 1 91 ASP n 1 92 ARG n 1 93 GLU n 1 94 ASN n 1 95 VAL n 1 96 VAL n 1 97 ASP n 1 98 PHE n 1 99 THR n 1 100 THR n 1 101 ARG n 1 102 TYR n 1 103 MET n 1 104 ASP n 1 105 TYR n 1 106 SER n 1 107 VAL n 1 108 GLY n 1 109 VAL n 1 110 LEU n 1 111 LEU n 1 112 ARG n 1 113 ARG n 1 114 GLY n 1 115 THR n 1 116 SER n 1 117 ILE n 1 118 GLN n 1 119 SER n 1 120 LEU n 1 121 GLN n 1 122 ASP n 1 123 LEU n 1 124 SER n 1 125 LYS n 1 126 GLN n 1 127 THR n 1 128 ASP n 1 129 ILE n 1 130 PRO n 1 131 TYR n 1 132 GLY n 1 133 THR n 1 134 VAL n 1 135 LEU n 1 136 ASP n 1 137 SER n 1 138 ALA n 1 139 VAL n 1 140 TYR n 1 141 GLN n 1 142 HIS n 1 143 VAL n 1 144 ARG n 1 145 MET n 1 146 LYS n 1 147 GLY n 1 148 LEU n 1 149 ASN n 1 150 PRO n 1 151 PHE n 1 152 GLU n 1 153 ARG n 1 154 ASP n 1 155 SER n 1 156 MET n 1 157 TYR n 1 158 SER n 1 159 GLN n 1 160 MET n 1 161 TRP n 1 162 ARG n 1 163 MET n 1 164 ILE n 1 165 ASN n 1 166 ARG n 1 167 SER n 1 168 ASN n 1 169 GLY n 1 170 SER n 1 171 GLU n 1 172 ASN n 1 173 ASN n 1 174 VAL n 1 175 LEU n 1 176 GLU n 1 177 SER n 1 178 GLN n 1 179 ALA n 1 180 GLY n 1 181 ILE n 1 182 GLN n 1 183 LYS n 1 184 VAL n 1 185 LYS n 1 186 TYR n 1 187 GLY n 1 188 ASN n 1 189 TYR n 1 190 ALA n 1 191 PHE n 1 192 VAL n 1 193 TRP n 1 194 ASP n 1 195 ALA n 1 196 ALA n 1 197 VAL n 1 198 LEU n 1 199 GLU n 1 200 TYR n 1 201 VAL n 1 202 ALA n 1 203 ILE n 1 204 ASN n 1 205 ASP n 1 206 PRO n 1 207 ASP n 1 208 CYS n 1 209 SER n 1 210 PHE n 1 211 TYR n 1 212 THR n 1 213 VAL n 1 214 GLY n 1 215 ASN n 1 216 THR n 1 217 VAL n 1 218 ALA n 1 219 ASP n 1 220 ARG n 1 221 GLY n 1 222 TYR n 1 223 GLY n 1 224 ILE n 1 225 ALA n 1 226 LEU n 1 227 GLN n 1 228 HIS n 1 229 GLY n 1 230 SER n 1 231 PRO n 1 232 TYR n 1 233 ARG n 1 234 ASP n 1 235 VAL n 1 236 PHE n 1 237 SER n 1 238 GLN n 1 239 ARG n 1 240 ILE n 1 241 LEU n 1 242 GLU n 1 243 LEU n 1 244 GLN n 1 245 GLN n 1 246 SER n 1 247 GLY n 1 248 ASP n 1 249 MET n 1 250 ASP n 1 251 ILE n 1 252 LEU n 1 253 LYS n 1 254 HIS n 1 255 LYS n 1 256 TRP n 1 257 TRP n 1 258 PRO n 1 259 LYS n 1 260 ASN n 1 261 GLY n 1 262 GLN n 1 263 CYS n 1 264 ASP n 1 265 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name RAT _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'RATTUS NORVEGICUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'ORIGAMI 2' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2V3U 1 ? ? 2V3U ? 2 UNP GRID2_RAT 1 ? ? Q63226 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2V3U A 1 ? 1 ? 2V3U 1 ? 1 ? 1 1 2 2 2V3U A 2 ? 113 ? Q63226 440 ? 551 ? 2 113 3 1 2V3U A 114 ? 115 ? 2V3U 114 ? 115 ? 114 115 4 2 2V3U A 116 ? 265 ? Q63226 664 ? 813 ? 116 265 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DSN 'D-peptide linking' . D-SERINE ? 'C3 H7 N O3' 105.093 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SCN non-polymer . 'THIOCYANATE ION' ? 'C N S -1' 58.082 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2V3U _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2 _exptl_crystal.density_percent_sol 40 _exptl_crystal.description ;THE TWO SEPARATE DOMAINS OF THE APO STRUCTURE WERE USED AS SEARCH MODELS AS BINDING OF D-SERINE WAS EXPECTED TO INDUCE CONFORMATIONAL CHANGES. ; # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'HANGING DROP VAPOR DIFFUSION. 20% PEG4000, 0.1 M CACODYLATE PH 6.5, 0.2 M SODIUM THIOCYANATE' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2006-01-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.95373 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_wavelength 0.95373 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2V3U _reflns.observed_criterion_sigma_I 6.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.00 _reflns.d_resolution_high 1.73 _reflns.number_obs 23508 _reflns.number_all ? _reflns.percent_possible_obs 92.3 _reflns.pdbx_Rmerge_I_obs 0.04 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.00 _reflns.B_iso_Wilson_estimate 23.59 _reflns.pdbx_redundancy 3.8 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.73 _reflns_shell.d_res_low 1.82 _reflns_shell.percent_possible_all 70.1 _reflns_shell.Rmerge_I_obs 0.26 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.10 _reflns_shell.pdbx_redundancy 3.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2V3U _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 21250 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 40.19 _refine.ls_d_res_high 1.74 _refine.ls_percent_reflns_obs 95.3 _refine.ls_R_factor_obs 0.200 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.197 _refine.ls_R_factor_R_free 0.250 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.200 _refine.ls_number_reflns_R_free 1154 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.923 _refine.B_iso_mean 24.16 _refine.aniso_B[1][1] -0.73000 _refine.aniso_B[2][2] 0.64000 _refine.aniso_B[3][3] -0.09000 _refine.aniso_B[1][2] 0.26000 _refine.aniso_B[1][3] 0.54000 _refine.aniso_B[2][3] -0.07000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. RESIDUES 167-171, 215-217 AND 262-265 ARE DISORDERED AND COULD NOT BE MODELED.' _refine.pdbx_starting_model 'PDB ENTRY 2V3T' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.148 _refine.pdbx_overall_ESU_R_Free 0.144 _refine.overall_SU_ML 0.091 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.762 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2022 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 135 _refine_hist.number_atoms_total 2172 _refine_hist.d_res_high 1.74 _refine_hist.d_res_low 40.19 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.022 ? 2088 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.526 1.951 ? 2827 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 11.478 5.000 ? 250 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.776 24.175 ? 103 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.315 15.000 ? 347 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.371 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.111 0.200 ? 306 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 1598 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.214 0.200 ? 999 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.312 0.200 ? 1431 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.136 0.200 ? 151 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.221 0.200 ? 46 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.127 0.200 ? 12 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.019 1.500 ? 1262 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.750 2.000 ? 2035 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.415 3.000 ? 867 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.785 4.500 ? 792 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.74 _refine_ls_shell.d_res_low 1.79 _refine_ls_shell.number_reflns_R_work 1378 _refine_ls_shell.R_factor_R_work 0.2700 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3470 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 80 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2V3U _struct.title 'Structure of the ligand-binding core of the ionotropic glutamate receptor-like GluRdelta2 in complex with D-serine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2V3U _struct_keywords.pdbx_keywords RECEPTOR _struct_keywords.text ;POSTSYNAPTIC MEMBRANE, IONOTROPIC GLUTAMATE RECEPTORS, TRANSMEMBRANE, MEMBRANE PROTEIN, LIGAND-BINDING CORE, GLYCOPROTEIN, IONIC CHANNEL, ION TRANSPORT, MEMBRANE, RECEPTOR, D-SERINE, TRANSPORT ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 31 ? GLY A 45 ? GLY A 31 GLY A 45 1 ? 15 HELX_P HELX_P2 2 ASN A 68 ? PHE A 76 ? ASN A 68 PHE A 76 1 ? 9 HELX_P HELX_P3 3 THR A 89 ? ASN A 94 ? THR A 89 ASN A 94 1 ? 6 HELX_P HELX_P4 4 SER A 119 ? LYS A 125 ? SER A 119 LYS A 125 1 ? 7 HELX_P HELX_P5 5 SER A 137 ? LEU A 148 ? SER A 137 LEU A 148 1 ? 12 HELX_P HELX_P6 6 SER A 155 ? ASN A 165 ? SER A 155 ASN A 165 1 ? 11 HELX_P HELX_P7 7 GLU A 176 ? GLY A 187 ? GLU A 176 GLY A 187 1 ? 12 HELX_P HELX_P8 8 ALA A 195 ? ASP A 205 ? ALA A 195 ASP A 205 1 ? 11 HELX_P HELX_P9 9 TYR A 232 ? SER A 246 ? TYR A 232 SER A 246 1 ? 15 HELX_P HELX_P10 10 GLY A 247 ? TRP A 257 ? GLY A 247 TRP A 257 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A GLU 93 O ? ? ? 1_555 C NA . NA ? ? A GLU 93 A NA 1263 1_555 ? ? ? ? ? ? ? 2.339 ? ? metalc2 metalc ? ? A GLU 93 OE2 ? ? ? 1_555 C NA . NA ? ? A GLU 93 A NA 1263 1_555 ? ? ? ? ? ? ? 2.450 ? ? metalc3 metalc ? ? A VAL 96 O ? ? ? 1_555 C NA . NA ? ? A VAL 96 A NA 1263 1_555 ? ? ? ? ? ? ? 2.572 ? ? metalc4 metalc ? ? A ASP 97 OD1 ? ? ? 1_555 C NA . NA ? ? A ASP 97 A NA 1263 1_555 ? ? ? ? ? ? ? 2.305 ? ? metalc5 metalc ? ? C NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 1263 A HOH 2054 1_555 ? ? ? ? ? ? ? 2.343 ? ? metalc6 metalc ? ? C NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 1263 A HOH 2114 1_555 ? ? ? ? ? ? ? 2.473 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 13 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 13 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 14 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 14 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -8.56 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? AB ? 2 ? AC ? 2 ? AD ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel AD 1 2 ? parallel AD 2 3 ? anti-parallel AD 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ASN A 47 ? VAL A 52 ? ASN A 47 VAL A 52 AA 2 VAL A 4 ? THR A 9 ? VAL A 4 THR A 9 AA 3 ILE A 81 ? GLY A 82 ? ILE A 81 GLY A 82 AA 4 ALA A 225 ? GLN A 227 ? ALA A 225 GLN A 227 AA 5 VAL A 96 ? PHE A 98 ? VAL A 96 PHE A 98 AB 1 MET A 17 ? SER A 19 ? MET A 17 SER A 19 AB 2 LYS A 28 ? GLN A 30 ? LYS A 28 GLN A 30 AC 1 MET A 103 ? TYR A 105 ? MET A 103 TYR A 105 AC 2 ARG A 220 ? TYR A 222 ? ARG A 220 TYR A 222 AD 1 TYR A 131 ? GLY A 132 ? TYR A 131 GLY A 132 AD 2 ALA A 190 ? ASP A 194 ? ALA A 190 ASP A 194 AD 3 VAL A 107 ? ARG A 112 ? VAL A 107 ARG A 112 AD 4 PHE A 210 ? VAL A 213 ? PHE A 210 VAL A 213 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N GLU A 49 ? N GLU A 49 O LEU A 5 ? O LEU A 5 AA 2 3 N VAL A 8 ? N VAL A 8 O ILE A 81 ? O ILE A 81 AA 3 4 N GLY A 82 ? N GLY A 82 O ALA A 225 ? O ALA A 225 AA 4 5 N LEU A 226 ? N LEU A 226 O ASP A 97 ? O ASP A 97 AB 1 2 N SER A 19 ? N SER A 19 O LYS A 28 ? O LYS A 28 AC 1 2 N TYR A 105 ? N TYR A 105 O ARG A 220 ? O ARG A 220 AD 1 2 N GLY A 132 ? N GLY A 132 O ALA A 190 ? O ALA A 190 AD 2 3 N TRP A 193 ? N TRP A 193 O GLY A 108 ? O GLY A 108 AD 3 4 N LEU A 111 ? N LEU A 111 O TYR A 211 ? O TYR A 211 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE DSN A1262' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NA A1263' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CL A1264' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SCN A1265' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SCN A1266' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 TYR A 58 ? TYR A 58 . ? 1_555 ? 2 AC1 10 ALA A 85 ? ALA A 85 . ? 1_555 ? 3 AC1 10 THR A 87 ? THR A 87 . ? 1_555 ? 4 AC1 10 ARG A 92 ? ARG A 92 . ? 1_555 ? 5 AC1 10 TYR A 105 ? TYR A 105 . ? 1_555 ? 6 AC1 10 SER A 137 ? SER A 137 . ? 1_555 ? 7 AC1 10 ALA A 138 ? ALA A 138 . ? 1_555 ? 8 AC1 10 VAL A 139 ? VAL A 139 . ? 1_555 ? 9 AC1 10 TRP A 193 ? TRP A 193 . ? 1_555 ? 10 AC1 10 ASP A 194 ? ASP A 194 . ? 1_555 ? 11 AC2 5 GLU A 93 ? GLU A 93 . ? 1_555 ? 12 AC2 5 VAL A 96 ? VAL A 96 . ? 1_555 ? 13 AC2 5 ASP A 97 ? ASP A 97 . ? 1_555 ? 14 AC2 5 HOH G . ? HOH A 2054 . ? 1_555 ? 15 AC2 5 HOH G . ? HOH A 2114 . ? 1_555 ? 16 AC3 3 LEU A 11 ? LEU A 11 . ? 1_555 ? 17 AC3 3 VAL A 52 ? VAL A 52 . ? 1_555 ? 18 AC3 3 HOH G . ? HOH A 2038 . ? 1_555 ? 19 AC4 4 GLY A 59 ? GLY A 59 . ? 1_555 ? 20 AC4 4 THR A 89 ? THR A 89 . ? 1_555 ? 21 AC4 4 ARG A 92 ? ARG A 92 . ? 1_555 ? 22 AC4 4 GLN A 141 ? GLN A 141 . ? 1_555 ? 23 AC5 4 TYR A 105 ? TYR A 105 . ? 1_555 ? 24 AC5 4 ALA A 138 ? ALA A 138 . ? 1_555 ? 25 AC5 4 HIS A 142 ? HIS A 142 . ? 1_555 ? 26 AC5 4 ARG A 220 ? ARG A 220 . ? 1_555 ? # _database_PDB_matrix.entry_id 2V3U _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2V3U _atom_sites.fract_transf_matrix[1][1] 0.027173 _atom_sites.fract_transf_matrix[1][2] -0.001681 _atom_sites.fract_transf_matrix[1][3] -0.004858 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024857 _atom_sites.fract_transf_matrix[2][3] -0.010486 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024880 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 MET 17 17 17 MET MET A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 TYR 29 29 29 TYR TYR A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 PHE 32 32 32 PHE PHE A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 ASN 42 42 42 ASN ASN A . n A 1 43 TYR 43 43 43 TYR TYR A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 HIS 56 56 56 HIS HIS A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 TRP 67 67 67 TRP TRP A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 PHE 76 76 76 PHE PHE A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 ILE 81 81 81 ILE ILE A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 PRO 90 90 90 PRO PRO A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 TYR 102 102 102 TYR TYR A . n A 1 103 MET 103 103 103 MET MET A . n A 1 104 ASP 104 104 104 ASP ASP A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 VAL 107 107 107 VAL VAL A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 ARG 113 113 113 ARG ARG A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 THR 115 115 115 THR THR A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 GLN 118 118 118 GLN GLN A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 ASP 122 122 122 ASP ASP A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 SER 124 124 124 SER SER A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 GLN 126 126 126 GLN GLN A . n A 1 127 THR 127 127 127 THR THR A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 PRO 130 130 130 PRO PRO A . n A 1 131 TYR 131 131 131 TYR TYR A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 THR 133 133 133 THR THR A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 ASP 136 136 136 ASP ASP A . n A 1 137 SER 137 137 137 SER SER A . n A 1 138 ALA 138 138 138 ALA ALA A . n A 1 139 VAL 139 139 139 VAL VAL A . n A 1 140 TYR 140 140 140 TYR TYR A . n A 1 141 GLN 141 141 141 GLN GLN A . n A 1 142 HIS 142 142 142 HIS HIS A . n A 1 143 VAL 143 143 143 VAL VAL A . n A 1 144 ARG 144 144 144 ARG ARG A . n A 1 145 MET 145 145 145 MET MET A . n A 1 146 LYS 146 146 146 LYS LYS A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 ASN 149 149 149 ASN ASN A . n A 1 150 PRO 150 150 150 PRO PRO A . n A 1 151 PHE 151 151 151 PHE PHE A . n A 1 152 GLU 152 152 152 GLU GLU A . n A 1 153 ARG 153 153 153 ARG ARG A . n A 1 154 ASP 154 154 154 ASP ASP A . n A 1 155 SER 155 155 155 SER SER A . n A 1 156 MET 156 156 156 MET MET A . n A 1 157 TYR 157 157 157 TYR TYR A . n A 1 158 SER 158 158 158 SER SER A . n A 1 159 GLN 159 159 159 GLN GLN A . n A 1 160 MET 160 160 160 MET MET A . n A 1 161 TRP 161 161 161 TRP TRP A . n A 1 162 ARG 162 162 162 ARG ARG A . n A 1 163 MET 163 163 163 MET MET A . n A 1 164 ILE 164 164 164 ILE ILE A . n A 1 165 ASN 165 165 165 ASN ASN A . n A 1 166 ARG 166 166 166 ARG ARG A . n A 1 167 SER 167 167 ? ? ? A . n A 1 168 ASN 168 168 ? ? ? A . n A 1 169 GLY 169 169 ? ? ? A . n A 1 170 SER 170 170 ? ? ? A . n A 1 171 GLU 171 171 ? ? ? A . n A 1 172 ASN 172 172 172 ASN ASN A . n A 1 173 ASN 173 173 173 ASN ASN A . n A 1 174 VAL 174 174 174 VAL VAL A . n A 1 175 LEU 175 175 175 LEU LEU A . n A 1 176 GLU 176 176 176 GLU GLU A . n A 1 177 SER 177 177 177 SER SER A . n A 1 178 GLN 178 178 178 GLN GLN A . n A 1 179 ALA 179 179 179 ALA ALA A . n A 1 180 GLY 180 180 180 GLY GLY A . n A 1 181 ILE 181 181 181 ILE ILE A . n A 1 182 GLN 182 182 182 GLN GLN A . n A 1 183 LYS 183 183 183 LYS LYS A . n A 1 184 VAL 184 184 184 VAL VAL A . n A 1 185 LYS 185 185 185 LYS LYS A . n A 1 186 TYR 186 186 186 TYR TYR A . n A 1 187 GLY 187 187 187 GLY GLY A . n A 1 188 ASN 188 188 188 ASN ASN A . n A 1 189 TYR 189 189 189 TYR TYR A . n A 1 190 ALA 190 190 190 ALA ALA A . n A 1 191 PHE 191 191 191 PHE PHE A . n A 1 192 VAL 192 192 192 VAL VAL A . n A 1 193 TRP 193 193 193 TRP TRP A . n A 1 194 ASP 194 194 194 ASP ASP A . n A 1 195 ALA 195 195 195 ALA ALA A . n A 1 196 ALA 196 196 196 ALA ALA A . n A 1 197 VAL 197 197 197 VAL VAL A . n A 1 198 LEU 198 198 198 LEU LEU A . n A 1 199 GLU 199 199 199 GLU GLU A . n A 1 200 TYR 200 200 200 TYR TYR A . n A 1 201 VAL 201 201 201 VAL VAL A . n A 1 202 ALA 202 202 202 ALA ALA A . n A 1 203 ILE 203 203 203 ILE ILE A . n A 1 204 ASN 204 204 204 ASN ASN A . n A 1 205 ASP 205 205 205 ASP ASP A . n A 1 206 PRO 206 206 206 PRO PRO A . n A 1 207 ASP 207 207 207 ASP ASP A . n A 1 208 CYS 208 208 208 CYS CYS A . n A 1 209 SER 209 209 209 SER SER A . n A 1 210 PHE 210 210 210 PHE PHE A . n A 1 211 TYR 211 211 211 TYR TYR A . n A 1 212 THR 212 212 212 THR THR A . n A 1 213 VAL 213 213 213 VAL VAL A . n A 1 214 GLY 214 214 214 GLY GLY A . n A 1 215 ASN 215 215 ? ? ? A . n A 1 216 THR 216 216 ? ? ? A . n A 1 217 VAL 217 217 ? ? ? A . n A 1 218 ALA 218 218 218 ALA ALA A . n A 1 219 ASP 219 219 219 ASP ASP A . n A 1 220 ARG 220 220 220 ARG ARG A . n A 1 221 GLY 221 221 221 GLY GLY A . n A 1 222 TYR 222 222 222 TYR TYR A . n A 1 223 GLY 223 223 223 GLY GLY A . n A 1 224 ILE 224 224 224 ILE ILE A . n A 1 225 ALA 225 225 225 ALA ALA A . n A 1 226 LEU 226 226 226 LEU LEU A . n A 1 227 GLN 227 227 227 GLN GLN A . n A 1 228 HIS 228 228 228 HIS HIS A . n A 1 229 GLY 229 229 229 GLY GLY A . n A 1 230 SER 230 230 230 SER SER A . n A 1 231 PRO 231 231 231 PRO PRO A . n A 1 232 TYR 232 232 232 TYR TYR A . n A 1 233 ARG 233 233 233 ARG ARG A . n A 1 234 ASP 234 234 234 ASP ASP A . n A 1 235 VAL 235 235 235 VAL VAL A . n A 1 236 PHE 236 236 236 PHE PHE A . n A 1 237 SER 237 237 237 SER SER A . n A 1 238 GLN 238 238 238 GLN GLN A . n A 1 239 ARG 239 239 239 ARG ARG A . n A 1 240 ILE 240 240 240 ILE ILE A . n A 1 241 LEU 241 241 241 LEU LEU A . n A 1 242 GLU 242 242 242 GLU GLU A . n A 1 243 LEU 243 243 243 LEU LEU A . n A 1 244 GLN 244 244 244 GLN GLN A . n A 1 245 GLN 245 245 245 GLN GLN A . n A 1 246 SER 246 246 246 SER SER A . n A 1 247 GLY 247 247 247 GLY GLY A . n A 1 248 ASP 248 248 248 ASP ASP A . n A 1 249 MET 249 249 249 MET MET A . n A 1 250 ASP 250 250 250 ASP ASP A . n A 1 251 ILE 251 251 251 ILE ILE A . n A 1 252 LEU 252 252 252 LEU LEU A . n A 1 253 LYS 253 253 253 LYS LYS A . n A 1 254 HIS 254 254 254 HIS HIS A . n A 1 255 LYS 255 255 255 LYS LYS A . n A 1 256 TRP 256 256 256 TRP TRP A . n A 1 257 TRP 257 257 257 TRP TRP A . n A 1 258 PRO 258 258 258 PRO PRO A . n A 1 259 LYS 259 259 259 LYS LYS A . n A 1 260 ASN 260 260 260 ASN ASN A . n A 1 261 GLY 261 261 261 GLY GLY A . n A 1 262 GLN 262 262 ? ? ? A . n A 1 263 CYS 263 263 ? ? ? A . n A 1 264 ASP 264 264 ? ? ? A . n A 1 265 LEU 265 265 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DSN 1 1262 1262 DSN DSN A . C 3 NA 1 1263 1263 NA NA A . D 4 CL 1 1264 1264 CL CL A . E 5 SCN 1 1265 1265 SCN SCN A . F 5 SCN 1 1266 1266 SCN SCN A . G 6 HOH 1 2001 2001 HOH HOH A . G 6 HOH 2 2002 2002 HOH HOH A . G 6 HOH 3 2003 2003 HOH HOH A . G 6 HOH 4 2004 2004 HOH HOH A . G 6 HOH 5 2005 2005 HOH HOH A . G 6 HOH 6 2006 2006 HOH HOH A . G 6 HOH 7 2007 2007 HOH HOH A . G 6 HOH 8 2008 2008 HOH HOH A . G 6 HOH 9 2009 2009 HOH HOH A . G 6 HOH 10 2010 2010 HOH HOH A . G 6 HOH 11 2011 2011 HOH HOH A . G 6 HOH 12 2012 2012 HOH HOH A . G 6 HOH 13 2013 2013 HOH HOH A . G 6 HOH 14 2014 2014 HOH HOH A . G 6 HOH 15 2015 2015 HOH HOH A . G 6 HOH 16 2016 2016 HOH HOH A . G 6 HOH 17 2017 2017 HOH HOH A . G 6 HOH 18 2018 2018 HOH HOH A . G 6 HOH 19 2019 2019 HOH HOH A . G 6 HOH 20 2020 2020 HOH HOH A . G 6 HOH 21 2021 2021 HOH HOH A . G 6 HOH 22 2022 2022 HOH HOH A . G 6 HOH 23 2023 2023 HOH HOH A . G 6 HOH 24 2024 2024 HOH HOH A . G 6 HOH 25 2025 2025 HOH HOH A . G 6 HOH 26 2026 2026 HOH HOH A . G 6 HOH 27 2027 2027 HOH HOH A . G 6 HOH 28 2028 2028 HOH HOH A . G 6 HOH 29 2029 2029 HOH HOH A . G 6 HOH 30 2030 2030 HOH HOH A . G 6 HOH 31 2031 2031 HOH HOH A . G 6 HOH 32 2032 2032 HOH HOH A . G 6 HOH 33 2033 2033 HOH HOH A . G 6 HOH 34 2034 2034 HOH HOH A . G 6 HOH 35 2035 2035 HOH HOH A . G 6 HOH 36 2036 2036 HOH HOH A . G 6 HOH 37 2037 2037 HOH HOH A . G 6 HOH 38 2038 2038 HOH HOH A . G 6 HOH 39 2039 2039 HOH HOH A . G 6 HOH 40 2040 2040 HOH HOH A . G 6 HOH 41 2041 2041 HOH HOH A . G 6 HOH 42 2042 2042 HOH HOH A . G 6 HOH 43 2043 2043 HOH HOH A . G 6 HOH 44 2044 2044 HOH HOH A . G 6 HOH 45 2045 2045 HOH HOH A . G 6 HOH 46 2046 2046 HOH HOH A . G 6 HOH 47 2047 2047 HOH HOH A . G 6 HOH 48 2048 2048 HOH HOH A . G 6 HOH 49 2049 2049 HOH HOH A . G 6 HOH 50 2050 2050 HOH HOH A . G 6 HOH 51 2051 2051 HOH HOH A . G 6 HOH 52 2052 2052 HOH HOH A . G 6 HOH 53 2053 2053 HOH HOH A . G 6 HOH 54 2054 2054 HOH HOH A . G 6 HOH 55 2055 2055 HOH HOH A . G 6 HOH 56 2056 2056 HOH HOH A . G 6 HOH 57 2057 2057 HOH HOH A . G 6 HOH 58 2058 2058 HOH HOH A . G 6 HOH 59 2059 2059 HOH HOH A . G 6 HOH 60 2060 2060 HOH HOH A . G 6 HOH 61 2061 2061 HOH HOH A . G 6 HOH 62 2062 2062 HOH HOH A . G 6 HOH 63 2063 2063 HOH HOH A . G 6 HOH 64 2064 2064 HOH HOH A . G 6 HOH 65 2065 2065 HOH HOH A . G 6 HOH 66 2066 2066 HOH HOH A . G 6 HOH 67 2067 2067 HOH HOH A . G 6 HOH 68 2068 2068 HOH HOH A . G 6 HOH 69 2069 2069 HOH HOH A . G 6 HOH 70 2070 2070 HOH HOH A . G 6 HOH 71 2071 2071 HOH HOH A . G 6 HOH 72 2072 2072 HOH HOH A . G 6 HOH 73 2073 2073 HOH HOH A . G 6 HOH 74 2074 2074 HOH HOH A . G 6 HOH 75 2075 2075 HOH HOH A . G 6 HOH 76 2076 2076 HOH HOH A . G 6 HOH 77 2077 2077 HOH HOH A . G 6 HOH 78 2078 2078 HOH HOH A . G 6 HOH 79 2079 2079 HOH HOH A . G 6 HOH 80 2080 2080 HOH HOH A . G 6 HOH 81 2081 2081 HOH HOH A . G 6 HOH 82 2082 2082 HOH HOH A . G 6 HOH 83 2083 2083 HOH HOH A . G 6 HOH 84 2084 2084 HOH HOH A . G 6 HOH 85 2085 2085 HOH HOH A . G 6 HOH 86 2086 2086 HOH HOH A . G 6 HOH 87 2087 2087 HOH HOH A . G 6 HOH 88 2088 2088 HOH HOH A . G 6 HOH 89 2089 2089 HOH HOH A . G 6 HOH 90 2090 2090 HOH HOH A . G 6 HOH 91 2091 2091 HOH HOH A . G 6 HOH 92 2092 2092 HOH HOH A . G 6 HOH 93 2093 2093 HOH HOH A . G 6 HOH 94 2094 2094 HOH HOH A . G 6 HOH 95 2095 2095 HOH HOH A . G 6 HOH 96 2096 2096 HOH HOH A . G 6 HOH 97 2097 2097 HOH HOH A . G 6 HOH 98 2098 2098 HOH HOH A . G 6 HOH 99 2099 2099 HOH HOH A . G 6 HOH 100 2100 2100 HOH HOH A . G 6 HOH 101 2101 2101 HOH HOH A . G 6 HOH 102 2102 2102 HOH HOH A . G 6 HOH 103 2103 2103 HOH HOH A . G 6 HOH 104 2104 2104 HOH HOH A . G 6 HOH 105 2105 2105 HOH HOH A . G 6 HOH 106 2106 2106 HOH HOH A . G 6 HOH 107 2107 2107 HOH HOH A . G 6 HOH 108 2108 2108 HOH HOH A . G 6 HOH 109 2109 2109 HOH HOH A . G 6 HOH 110 2110 2110 HOH HOH A . G 6 HOH 111 2111 2111 HOH HOH A . G 6 HOH 112 2112 2112 HOH HOH A . G 6 HOH 113 2113 2113 HOH HOH A . G 6 HOH 114 2114 2114 HOH HOH A . G 6 HOH 115 2115 2115 HOH HOH A . G 6 HOH 116 2116 2116 HOH HOH A . G 6 HOH 117 2117 2117 HOH HOH A . G 6 HOH 118 2118 2118 HOH HOH A . G 6 HOH 119 2119 2119 HOH HOH A . G 6 HOH 120 2120 2120 HOH HOH A . G 6 HOH 121 2121 2121 HOH HOH A . G 6 HOH 122 2122 2122 HOH HOH A . G 6 HOH 123 2123 2123 HOH HOH A . G 6 HOH 124 2124 2124 HOH HOH A . G 6 HOH 125 2125 2125 HOH HOH A . G 6 HOH 126 2126 2126 HOH HOH A . G 6 HOH 127 2127 2127 HOH HOH A . G 6 HOH 128 2128 2128 HOH HOH A . G 6 HOH 129 2129 2129 HOH HOH A . G 6 HOH 130 2130 2130 HOH HOH A . G 6 HOH 131 2131 2131 HOH HOH A . G 6 HOH 132 2132 2132 HOH HOH A . G 6 HOH 133 2133 2133 HOH HOH A . G 6 HOH 134 2134 2134 HOH HOH A . G 6 HOH 135 2135 2135 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A GLU 93 ? A GLU 93 ? 1_555 NA ? C NA . ? A NA 1263 ? 1_555 OE2 ? A GLU 93 ? A GLU 93 ? 1_555 91.9 ? 2 O ? A GLU 93 ? A GLU 93 ? 1_555 NA ? C NA . ? A NA 1263 ? 1_555 O ? A VAL 96 ? A VAL 96 ? 1_555 79.9 ? 3 OE2 ? A GLU 93 ? A GLU 93 ? 1_555 NA ? C NA . ? A NA 1263 ? 1_555 O ? A VAL 96 ? A VAL 96 ? 1_555 89.0 ? 4 O ? A GLU 93 ? A GLU 93 ? 1_555 NA ? C NA . ? A NA 1263 ? 1_555 OD1 ? A ASP 97 ? A ASP 97 ? 1_555 163.5 ? 5 OE2 ? A GLU 93 ? A GLU 93 ? 1_555 NA ? C NA . ? A NA 1263 ? 1_555 OD1 ? A ASP 97 ? A ASP 97 ? 1_555 92.6 ? 6 O ? A VAL 96 ? A VAL 96 ? 1_555 NA ? C NA . ? A NA 1263 ? 1_555 OD1 ? A ASP 97 ? A ASP 97 ? 1_555 84.4 ? 7 O ? A GLU 93 ? A GLU 93 ? 1_555 NA ? C NA . ? A NA 1263 ? 1_555 O ? G HOH . ? A HOH 2054 ? 1_555 94.2 ? 8 OE2 ? A GLU 93 ? A GLU 93 ? 1_555 NA ? C NA . ? A NA 1263 ? 1_555 O ? G HOH . ? A HOH 2054 ? 1_555 93.5 ? 9 O ? A VAL 96 ? A VAL 96 ? 1_555 NA ? C NA . ? A NA 1263 ? 1_555 O ? G HOH . ? A HOH 2054 ? 1_555 173.6 ? 10 OD1 ? A ASP 97 ? A ASP 97 ? 1_555 NA ? C NA . ? A NA 1263 ? 1_555 O ? G HOH . ? A HOH 2054 ? 1_555 101.3 ? 11 O ? A GLU 93 ? A GLU 93 ? 1_555 NA ? C NA . ? A NA 1263 ? 1_555 O ? G HOH . ? A HOH 2114 ? 1_555 84.6 ? 12 OE2 ? A GLU 93 ? A GLU 93 ? 1_555 NA ? C NA . ? A NA 1263 ? 1_555 O ? G HOH . ? A HOH 2114 ? 1_555 175.1 ? 13 O ? A VAL 96 ? A VAL 96 ? 1_555 NA ? C NA . ? A NA 1263 ? 1_555 O ? G HOH . ? A HOH 2114 ? 1_555 86.9 ? 14 OD1 ? A ASP 97 ? A ASP 97 ? 1_555 NA ? C NA . ? A NA 1263 ? 1_555 O ? G HOH . ? A HOH 2114 ? 1_555 89.8 ? 15 O ? G HOH . ? A HOH 2054 ? 1_555 NA ? C NA . ? A NA 1263 ? 1_555 O ? G HOH . ? A HOH 2114 ? 1_555 90.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-07 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-05-08 5 'Structure model' 1 4 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Experimental preparation' 5 4 'Structure model' Other 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' Other 10 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_PDB_rev 2 4 'Structure model' database_PDB_rev_record 3 4 'Structure model' exptl_crystal_grow 4 4 'Structure model' pdbx_database_proc 5 4 'Structure model' pdbx_database_status 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' database_2 9 5 'Structure model' pdbx_database_status 10 5 'Structure model' pdbx_initial_refinement_model 11 5 'Structure model' pdbx_struct_conn_angle 12 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.method' 2 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_pdbx_database_status.status_code_sf' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.value' 19 5 'Structure model' '_struct_conn.pdbx_dist_value' 20 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 26 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 27 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 28 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 29 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 30 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 31 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0016 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 2V3U _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE NATIVE GLURDELTA2 IS A MEMBRANE PROTEIN. THE CRYSTALLIZED PROTEIN IS THE EXTRACELLULAR LIGAND-BINDING CORE OF GLURDELTA2. TRANSMEMBRANE REGIONS WERE GENETICALLY REMOVED AND REPLACED WITH A GLY-THR LINKER. CONSEQUENTLY, THE PROTEIN SEQUENCE MATCHES DISCONTINOUSLY WITH THE REFERENCE DATABASE. THE FIRST GLYCINE OF THE SEQUENCE IS A REMNANT OF A TRYPSIN CLEVAGE SITE ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 12 ? ? -172.82 125.44 2 1 PRO A 14 ? ? -96.89 36.13 3 1 SER A 84 ? ? -161.87 -130.21 4 1 ASN A 165 ? ? -37.13 118.13 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 GLU A 12 ? ? GLU A 13 ? ? -148.34 2 1 VAL A 18 ? ? SER A 19 ? ? 147.28 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 167 ? A SER 167 2 1 Y 1 A ASN 168 ? A ASN 168 3 1 Y 1 A GLY 169 ? A GLY 169 4 1 Y 1 A SER 170 ? A SER 170 5 1 Y 1 A GLU 171 ? A GLU 171 6 1 Y 1 A ASN 215 ? A ASN 215 7 1 Y 1 A THR 216 ? A THR 216 8 1 Y 1 A VAL 217 ? A VAL 217 9 1 Y 1 A GLN 262 ? A GLN 262 10 1 Y 1 A CYS 263 ? A CYS 263 11 1 Y 1 A ASP 264 ? A ASP 264 12 1 Y 1 A LEU 265 ? A LEU 265 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 DSN N N N N 89 DSN CA C N R 90 DSN C C N N 91 DSN O O N N 92 DSN OXT O N N 93 DSN CB C N N 94 DSN OG O N N 95 DSN H H N N 96 DSN H2 H N N 97 DSN HA H N N 98 DSN HXT H N N 99 DSN HB2 H N N 100 DSN HB3 H N N 101 DSN HG H N N 102 GLN N N N N 103 GLN CA C N S 104 GLN C C N N 105 GLN O O N N 106 GLN CB C N N 107 GLN CG C N N 108 GLN CD C N N 109 GLN OE1 O N N 110 GLN NE2 N N N 111 GLN OXT O N N 112 GLN H H N N 113 GLN H2 H N N 114 GLN HA H N N 115 GLN HB2 H N N 116 GLN HB3 H N N 117 GLN HG2 H N N 118 GLN HG3 H N N 119 GLN HE21 H N N 120 GLN HE22 H N N 121 GLN HXT H N N 122 GLU N N N N 123 GLU CA C N S 124 GLU C C N N 125 GLU O O N N 126 GLU CB C N N 127 GLU CG C N N 128 GLU CD C N N 129 GLU OE1 O N N 130 GLU OE2 O N N 131 GLU OXT O N N 132 GLU H H N N 133 GLU H2 H N N 134 GLU HA H N N 135 GLU HB2 H N N 136 GLU HB3 H N N 137 GLU HG2 H N N 138 GLU HG3 H N N 139 GLU HE2 H N N 140 GLU HXT H N N 141 GLY N N N N 142 GLY CA C N N 143 GLY C C N N 144 GLY O O N N 145 GLY OXT O N N 146 GLY H H N N 147 GLY H2 H N N 148 GLY HA2 H N N 149 GLY HA3 H N N 150 GLY HXT H N N 151 HIS N N N N 152 HIS CA C N S 153 HIS C C N N 154 HIS O O N N 155 HIS CB C N N 156 HIS CG C Y N 157 HIS ND1 N Y N 158 HIS CD2 C Y N 159 HIS CE1 C Y N 160 HIS NE2 N Y N 161 HIS OXT O N N 162 HIS H H N N 163 HIS H2 H N N 164 HIS HA H N N 165 HIS HB2 H N N 166 HIS HB3 H N N 167 HIS HD1 H N N 168 HIS HD2 H N N 169 HIS HE1 H N N 170 HIS HE2 H N N 171 HIS HXT H N N 172 HOH O O N N 173 HOH H1 H N N 174 HOH H2 H N N 175 ILE N N N N 176 ILE CA C N S 177 ILE C C N N 178 ILE O O N N 179 ILE CB C N S 180 ILE CG1 C N N 181 ILE CG2 C N N 182 ILE CD1 C N N 183 ILE OXT O N N 184 ILE H H N N 185 ILE H2 H N N 186 ILE HA H N N 187 ILE HB H N N 188 ILE HG12 H N N 189 ILE HG13 H N N 190 ILE HG21 H N N 191 ILE HG22 H N N 192 ILE HG23 H N N 193 ILE HD11 H N N 194 ILE HD12 H N N 195 ILE HD13 H N N 196 ILE HXT H N N 197 LEU N N N N 198 LEU CA C N S 199 LEU C C N N 200 LEU O O N N 201 LEU CB C N N 202 LEU CG C N N 203 LEU CD1 C N N 204 LEU CD2 C N N 205 LEU OXT O N N 206 LEU H H N N 207 LEU H2 H N N 208 LEU HA H N N 209 LEU HB2 H N N 210 LEU HB3 H N N 211 LEU HG H N N 212 LEU HD11 H N N 213 LEU HD12 H N N 214 LEU HD13 H N N 215 LEU HD21 H N N 216 LEU HD22 H N N 217 LEU HD23 H N N 218 LEU HXT H N N 219 LYS N N N N 220 LYS CA C N S 221 LYS C C N N 222 LYS O O N N 223 LYS CB C N N 224 LYS CG C N N 225 LYS CD C N N 226 LYS CE C N N 227 LYS NZ N N N 228 LYS OXT O N N 229 LYS H H N N 230 LYS H2 H N N 231 LYS HA H N N 232 LYS HB2 H N N 233 LYS HB3 H N N 234 LYS HG2 H N N 235 LYS HG3 H N N 236 LYS HD2 H N N 237 LYS HD3 H N N 238 LYS HE2 H N N 239 LYS HE3 H N N 240 LYS HZ1 H N N 241 LYS HZ2 H N N 242 LYS HZ3 H N N 243 LYS HXT H N N 244 MET N N N N 245 MET CA C N S 246 MET C C N N 247 MET O O N N 248 MET CB C N N 249 MET CG C N N 250 MET SD S N N 251 MET CE C N N 252 MET OXT O N N 253 MET H H N N 254 MET H2 H N N 255 MET HA H N N 256 MET HB2 H N N 257 MET HB3 H N N 258 MET HG2 H N N 259 MET HG3 H N N 260 MET HE1 H N N 261 MET HE2 H N N 262 MET HE3 H N N 263 MET HXT H N N 264 NA NA NA N N 265 PHE N N N N 266 PHE CA C N S 267 PHE C C N N 268 PHE O O N N 269 PHE CB C N N 270 PHE CG C Y N 271 PHE CD1 C Y N 272 PHE CD2 C Y N 273 PHE CE1 C Y N 274 PHE CE2 C Y N 275 PHE CZ C Y N 276 PHE OXT O N N 277 PHE H H N N 278 PHE H2 H N N 279 PHE HA H N N 280 PHE HB2 H N N 281 PHE HB3 H N N 282 PHE HD1 H N N 283 PHE HD2 H N N 284 PHE HE1 H N N 285 PHE HE2 H N N 286 PHE HZ H N N 287 PHE HXT H N N 288 PRO N N N N 289 PRO CA C N S 290 PRO C C N N 291 PRO O O N N 292 PRO CB C N N 293 PRO CG C N N 294 PRO CD C N N 295 PRO OXT O N N 296 PRO H H N N 297 PRO HA H N N 298 PRO HB2 H N N 299 PRO HB3 H N N 300 PRO HG2 H N N 301 PRO HG3 H N N 302 PRO HD2 H N N 303 PRO HD3 H N N 304 PRO HXT H N N 305 SCN S S N N 306 SCN C C N N 307 SCN N N N N 308 SER N N N N 309 SER CA C N S 310 SER C C N N 311 SER O O N N 312 SER CB C N N 313 SER OG O N N 314 SER OXT O N N 315 SER H H N N 316 SER H2 H N N 317 SER HA H N N 318 SER HB2 H N N 319 SER HB3 H N N 320 SER HG H N N 321 SER HXT H N N 322 THR N N N N 323 THR CA C N S 324 THR C C N N 325 THR O O N N 326 THR CB C N R 327 THR OG1 O N N 328 THR CG2 C N N 329 THR OXT O N N 330 THR H H N N 331 THR H2 H N N 332 THR HA H N N 333 THR HB H N N 334 THR HG1 H N N 335 THR HG21 H N N 336 THR HG22 H N N 337 THR HG23 H N N 338 THR HXT H N N 339 TRP N N N N 340 TRP CA C N S 341 TRP C C N N 342 TRP O O N N 343 TRP CB C N N 344 TRP CG C Y N 345 TRP CD1 C Y N 346 TRP CD2 C Y N 347 TRP NE1 N Y N 348 TRP CE2 C Y N 349 TRP CE3 C Y N 350 TRP CZ2 C Y N 351 TRP CZ3 C Y N 352 TRP CH2 C Y N 353 TRP OXT O N N 354 TRP H H N N 355 TRP H2 H N N 356 TRP HA H N N 357 TRP HB2 H N N 358 TRP HB3 H N N 359 TRP HD1 H N N 360 TRP HE1 H N N 361 TRP HE3 H N N 362 TRP HZ2 H N N 363 TRP HZ3 H N N 364 TRP HH2 H N N 365 TRP HXT H N N 366 TYR N N N N 367 TYR CA C N S 368 TYR C C N N 369 TYR O O N N 370 TYR CB C N N 371 TYR CG C Y N 372 TYR CD1 C Y N 373 TYR CD2 C Y N 374 TYR CE1 C Y N 375 TYR CE2 C Y N 376 TYR CZ C Y N 377 TYR OH O N N 378 TYR OXT O N N 379 TYR H H N N 380 TYR H2 H N N 381 TYR HA H N N 382 TYR HB2 H N N 383 TYR HB3 H N N 384 TYR HD1 H N N 385 TYR HD2 H N N 386 TYR HE1 H N N 387 TYR HE2 H N N 388 TYR HH H N N 389 TYR HXT H N N 390 VAL N N N N 391 VAL CA C N S 392 VAL C C N N 393 VAL O O N N 394 VAL CB C N N 395 VAL CG1 C N N 396 VAL CG2 C N N 397 VAL OXT O N N 398 VAL H H N N 399 VAL H2 H N N 400 VAL HA H N N 401 VAL HB H N N 402 VAL HG11 H N N 403 VAL HG12 H N N 404 VAL HG13 H N N 405 VAL HG21 H N N 406 VAL HG22 H N N 407 VAL HG23 H N N 408 VAL HXT H N N 409 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DSN N CA sing N N 83 DSN N H sing N N 84 DSN N H2 sing N N 85 DSN CA C sing N N 86 DSN CA CB sing N N 87 DSN CA HA sing N N 88 DSN C O doub N N 89 DSN C OXT sing N N 90 DSN OXT HXT sing N N 91 DSN CB OG sing N N 92 DSN CB HB2 sing N N 93 DSN CB HB3 sing N N 94 DSN OG HG sing N N 95 GLN N CA sing N N 96 GLN N H sing N N 97 GLN N H2 sing N N 98 GLN CA C sing N N 99 GLN CA CB sing N N 100 GLN CA HA sing N N 101 GLN C O doub N N 102 GLN C OXT sing N N 103 GLN CB CG sing N N 104 GLN CB HB2 sing N N 105 GLN CB HB3 sing N N 106 GLN CG CD sing N N 107 GLN CG HG2 sing N N 108 GLN CG HG3 sing N N 109 GLN CD OE1 doub N N 110 GLN CD NE2 sing N N 111 GLN NE2 HE21 sing N N 112 GLN NE2 HE22 sing N N 113 GLN OXT HXT sing N N 114 GLU N CA sing N N 115 GLU N H sing N N 116 GLU N H2 sing N N 117 GLU CA C sing N N 118 GLU CA CB sing N N 119 GLU CA HA sing N N 120 GLU C O doub N N 121 GLU C OXT sing N N 122 GLU CB CG sing N N 123 GLU CB HB2 sing N N 124 GLU CB HB3 sing N N 125 GLU CG CD sing N N 126 GLU CG HG2 sing N N 127 GLU CG HG3 sing N N 128 GLU CD OE1 doub N N 129 GLU CD OE2 sing N N 130 GLU OE2 HE2 sing N N 131 GLU OXT HXT sing N N 132 GLY N CA sing N N 133 GLY N H sing N N 134 GLY N H2 sing N N 135 GLY CA C sing N N 136 GLY CA HA2 sing N N 137 GLY CA HA3 sing N N 138 GLY C O doub N N 139 GLY C OXT sing N N 140 GLY OXT HXT sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SCN S C sing N N 290 SCN C N trip N N 291 SER N CA sing N N 292 SER N H sing N N 293 SER N H2 sing N N 294 SER CA C sing N N 295 SER CA CB sing N N 296 SER CA HA sing N N 297 SER C O doub N N 298 SER C OXT sing N N 299 SER CB OG sing N N 300 SER CB HB2 sing N N 301 SER CB HB3 sing N N 302 SER OG HG sing N N 303 SER OXT HXT sing N N 304 THR N CA sing N N 305 THR N H sing N N 306 THR N H2 sing N N 307 THR CA C sing N N 308 THR CA CB sing N N 309 THR CA HA sing N N 310 THR C O doub N N 311 THR C OXT sing N N 312 THR CB OG1 sing N N 313 THR CB CG2 sing N N 314 THR CB HB sing N N 315 THR OG1 HG1 sing N N 316 THR CG2 HG21 sing N N 317 THR CG2 HG22 sing N N 318 THR CG2 HG23 sing N N 319 THR OXT HXT sing N N 320 TRP N CA sing N N 321 TRP N H sing N N 322 TRP N H2 sing N N 323 TRP CA C sing N N 324 TRP CA CB sing N N 325 TRP CA HA sing N N 326 TRP C O doub N N 327 TRP C OXT sing N N 328 TRP CB CG sing N N 329 TRP CB HB2 sing N N 330 TRP CB HB3 sing N N 331 TRP CG CD1 doub Y N 332 TRP CG CD2 sing Y N 333 TRP CD1 NE1 sing Y N 334 TRP CD1 HD1 sing N N 335 TRP CD2 CE2 doub Y N 336 TRP CD2 CE3 sing Y N 337 TRP NE1 CE2 sing Y N 338 TRP NE1 HE1 sing N N 339 TRP CE2 CZ2 sing Y N 340 TRP CE3 CZ3 doub Y N 341 TRP CE3 HE3 sing N N 342 TRP CZ2 CH2 doub Y N 343 TRP CZ2 HZ2 sing N N 344 TRP CZ3 CH2 sing Y N 345 TRP CZ3 HZ3 sing N N 346 TRP CH2 HH2 sing N N 347 TRP OXT HXT sing N N 348 TYR N CA sing N N 349 TYR N H sing N N 350 TYR N H2 sing N N 351 TYR CA C sing N N 352 TYR CA CB sing N N 353 TYR CA HA sing N N 354 TYR C O doub N N 355 TYR C OXT sing N N 356 TYR CB CG sing N N 357 TYR CB HB2 sing N N 358 TYR CB HB3 sing N N 359 TYR CG CD1 doub Y N 360 TYR CG CD2 sing Y N 361 TYR CD1 CE1 sing Y N 362 TYR CD1 HD1 sing N N 363 TYR CD2 CE2 doub Y N 364 TYR CD2 HD2 sing N N 365 TYR CE1 CZ doub Y N 366 TYR CE1 HE1 sing N N 367 TYR CE2 CZ sing Y N 368 TYR CE2 HE2 sing N N 369 TYR CZ OH sing N N 370 TYR OH HH sing N N 371 TYR OXT HXT sing N N 372 VAL N CA sing N N 373 VAL N H sing N N 374 VAL N H2 sing N N 375 VAL CA C sing N N 376 VAL CA CB sing N N 377 VAL CA HA sing N N 378 VAL C O doub N N 379 VAL C OXT sing N N 380 VAL CB CG1 sing N N 381 VAL CB CG2 sing N N 382 VAL CB HB sing N N 383 VAL CG1 HG11 sing N N 384 VAL CG1 HG12 sing N N 385 VAL CG1 HG13 sing N N 386 VAL CG2 HG21 sing N N 387 VAL CG2 HG22 sing N N 388 VAL CG2 HG23 sing N N 389 VAL OXT HXT sing N N 390 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 D-SERINE DSN 3 'SODIUM ION' NA 4 'CHLORIDE ION' CL 5 'THIOCYANATE ION' SCN 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2V3T _pdbx_initial_refinement_model.details 'PDB ENTRY 2V3T' #