HEADER HYDROLASE 26-SEP-08 2V4N TITLE CRYSTAL STRUCTURE OF SALMONELLA TYPHIMURIUM SURE AT 1.7 ANGSTROM TITLE 2 RESOLUTION IN ORTHORHOMBIC FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MULTIFUNCTIONAL PROTEIN SUR E; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SURVIVAL PROTEIN E, 5'/3'-NUCLEOTIDASE, NUCLEOSIDE COMPND 5 MONOPHOSPHATE PHOSPHOHYDROLASE, EXOPOLYPHOSPHATASE; COMPND 6 EC: 3.1.3.5, 3.1.3.6, 3.6.1.11; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 99287; SOURCE 4 STRAIN: LT2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSET-C KEYWDS HYDROLASE, SUR E, SURVIVAL PROTEIN, STATIONARY PHASE, PHOSPHATASE, KEYWDS 2 MONONUCLEOTIDASE, DIVALENT METAL ION, DOMAIN SWAPPING, ROSSMANN FOLD EXPDTA X-RAY DIFFRACTION AUTHOR P.ANJU,H.S.SAVITHRI,M.R.N.MURTHY REVDAT 4 13-DEC-23 2V4N 1 LINK REVDAT 3 08-MAY-19 2V4N 1 REMARK REVDAT 2 13-JUL-11 2V4N 1 VERSN REVDAT 1 09-DEC-08 2V4N 0 JRNL AUTH A.PAPPACHAN,H.S.SAVITHRI,M.R.N.MURTHY JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES ON A MESOPHILIC STATIONARY JRNL TITL 2 PHASE SURVIVAL PROTEIN (SUR E) FROM SALMONELLA TYPHIMURIUM JRNL REF FEBS J. V. 275 5855 2008 JRNL REFN ISSN 1742-464X JRNL PMID 19021761 JRNL DOI 10.1111/J.1742-4658.2008.06715.X REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 33610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1773 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2405 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3750 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.4170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1896 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 285 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.99000 REMARK 3 B22 (A**2) : -0.90000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.817 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1988 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2731 ; 1.072 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 268 ; 5.708 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;31.126 ;23.721 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 294 ;11.677 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.178 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 314 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1551 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 865 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1369 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 220 ; 0.126 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 125 ; 0.161 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 55 ; 0.121 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1315 ; 0.484 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2083 ; 0.824 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 752 ; 1.366 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 640 ; 2.081 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 253 REMARK 3 ORIGIN FOR THE GROUP (A): 53.6774 81.3722 86.7888 REMARK 3 T TENSOR REMARK 3 T11: -0.0738 T22: -0.0821 REMARK 3 T33: -0.0771 T12: -0.0197 REMARK 3 T13: -0.0288 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.9084 L22: 0.9966 REMARK 3 L33: 0.8585 L12: 0.3591 REMARK 3 L13: 0.2170 L23: 0.1401 REMARK 3 S TENSOR REMARK 3 S11: 0.1023 S12: -0.0780 S13: -0.1675 REMARK 3 S21: 0.0926 S22: -0.0565 S23: -0.1105 REMARK 3 S31: 0.1559 S32: -0.0498 S33: -0.0458 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2V4N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1290037223. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35384 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 50.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1J9J REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M TRISODIUM CITRATE DIHYDRATE, 0.1M REMARK 280 HEPES PH 7.5, 30% MPD MICROBATCH METHOD REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.81900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 71.62800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.81900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.62800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.81900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.62800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.81900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.62800 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 36.86500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 71.62800 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 36.86500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 71.62800 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 36.86500 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 71.62800 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 36.86500 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 71.62800 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 36.86500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 60.81900 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 36.86500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 60.81900 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 36.86500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 60.81900 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 36.86500 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 60.81900 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 110.59500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 182.45700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2054 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2243 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2250 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 57 CG OD1 OD2 REMARK 470 ARG A 151 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 26 -6.25 -145.92 REMARK 500 SER A 42 -146.10 52.80 REMARK 500 ASN A 43 32.88 -93.37 REMARK 500 MET A 65 13.47 59.70 REMARK 500 ALA A 78 -44.15 -146.78 REMARK 500 GLN A 129 -64.77 -97.46 REMARK 500 ALA A 208 33.23 -142.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2038 DISTANCE = 6.45 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1254 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD2 REMARK 620 2 ASP A 9 OD1 116.0 REMARK 620 3 SER A 39 OG 92.1 79.8 REMARK 620 4 ASN A 92 OD1 95.4 92.8 171.2 REMARK 620 5 HOH A2113 O 170.7 70.5 82.4 90.8 REMARK 620 6 HOH A2282 O 90.4 151.0 87.9 96.7 82.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1255 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 248 O REMARK 620 2 GLY A 248 O 130.4 REMARK 620 3 THR A 251 O 112.0 78.0 REMARK 620 4 THR A 251 O 86.1 143.1 83.8 REMARK 620 5 HOH A2277 O 106.2 73.5 141.5 104.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1256 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A1257 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V4O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SALMONELLA TYPHIMURIUM SURE AT 2.75 ANGSTROM REMARK 900 RESOLUTION IN MONOCLINIC FORM DBREF 2V4N A 0 0 PDB 2V4N 2V4N 0 0 DBREF 2V4N A 1 253 UNP P66881 SURE_SALTY 1 253 SEQRES 1 A 254 SER MET ARG ILE LEU LEU SER ASN ASP ASP GLY VAL HIS SEQRES 2 A 254 ALA PRO GLY ILE GLN THR LEU ALA LYS ALA LEU ARG GLU SEQRES 3 A 254 PHE ALA ASP VAL GLN VAL VAL ALA PRO ASP ARG ASN ARG SEQRES 4 A 254 SER GLY ALA SER ASN SER LEU THR LEU GLU SER SER LEU SEQRES 5 A 254 ARG THR PHE THR PHE ASP ASN GLY ASP ILE ALA VAL GLN SEQRES 6 A 254 MET GLY THR PRO THR ASP CYS VAL TYR LEU GLY VAL ASN SEQRES 7 A 254 ALA LEU MET ARG PRO ARG PRO ASP ILE VAL VAL SER GLY SEQRES 8 A 254 ILE ASN ALA GLY PRO ASN LEU GLY ASP ASP VAL ILE TYR SEQRES 9 A 254 SER GLY THR VAL ALA ALA ALA MET GLU GLY ARG HIS LEU SEQRES 10 A 254 GLY PHE PRO ALA LEU ALA VAL SER LEU ASN GLY TYR GLN SEQRES 11 A 254 HIS TYR ASP THR ALA ALA ALA VAL THR CYS ALA LEU LEU SEQRES 12 A 254 ARG GLY LEU SER ARG GLU PRO LEU ARG THR GLY ARG ILE SEQRES 13 A 254 LEU ASN VAL ASN VAL PRO ASP LEU PRO LEU ALA GLN VAL SEQRES 14 A 254 LYS GLY ILE ARG VAL THR ARG CYS GLY SER ARG HIS PRO SEQRES 15 A 254 ALA ASP LYS VAL ILE PRO GLN GLU ASP PRO ARG GLY ASN SEQRES 16 A 254 THR LEU TYR TRP ILE GLY PRO PRO GLY ASP LYS TYR ASP SEQRES 17 A 254 ALA GLY PRO ASP THR ASP PHE ALA ALA VAL ASP GLU GLY SEQRES 18 A 254 TYR VAL SER VAL THR PRO LEU HIS VAL ASP LEU THR ALA SEQRES 19 A 254 HIS SER ALA HIS ASP VAL VAL SER ASP TRP LEU ASP SER SEQRES 20 A 254 VAL GLY VAL GLY THR GLN TRP HET MG A1254 1 HET MG A1255 1 HET GOL A1256 6 HET PO4 A1257 5 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG 2(MG 2+) FORMUL 4 GOL C3 H8 O3 FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *285(H2 O) HELIX 1 1 ALA A 13 ARG A 24 1 12 HELIX 2 2 THR A 67 ALA A 78 1 12 HELIX 3 3 LEU A 97 TYR A 103 5 7 HELIX 4 4 SER A 104 GLU A 112 1 9 HELIX 5 5 HIS A 130 GLU A 148 1 19 HELIX 6 6 PRO A 164 VAL A 168 5 5 HELIX 7 7 THR A 212 GLU A 219 1 8 HELIX 8 8 ALA A 233 SER A 235 5 3 HELIX 9 9 ALA A 236 GLY A 248 1 13 SHEET 1 AA 9 ARG A 52 THR A 55 0 SHEET 2 AA 9 ILE A 61 GLN A 64 -1 O ALA A 62 N PHE A 54 SHEET 3 AA 9 ASP A 28 PRO A 34 1 O VAL A 31 N ILE A 61 SHEET 4 AA 9 ARG A 2 SER A 6 1 O ILE A 3 N GLN A 30 SHEET 5 AA 9 ILE A 86 ALA A 93 1 O ILE A 86 N LEU A 4 SHEET 6 AA 9 ALA A 120 LEU A 125 1 O LEU A 121 N SER A 89 SHEET 7 AA 9 ILE A 155 VAL A 160 1 O LEU A 156 N ALA A 122 SHEET 8 AA 9 VAL A 222 LEU A 227 -1 O SER A 223 N ASN A 159 SHEET 9 AA 9 ILE A 171 VAL A 173 1 O ARG A 172 N VAL A 224 SHEET 1 AB 2 SER A 178 ARG A 179 0 SHEET 2 AB 2 LYS A 205 ASP A 207 -1 N TYR A 206 O SER A 178 SHEET 1 AC 2 VAL A 185 GLU A 189 0 SHEET 2 AC 2 THR A 195 ILE A 199 -1 O LEU A 196 N GLN A 188 LINK OD2 ASP A 8 MG MG A1254 1555 1555 2.64 LINK OD1 ASP A 9 MG MG A1254 1555 1555 2.19 LINK OG SER A 39 MG MG A1254 1555 1555 2.45 LINK OD1 ASN A 92 MG MG A1254 1555 1555 2.31 LINK O GLY A 248 MG MG A1255 4576 1555 2.33 LINK O GLY A 248 MG MG A1255 1555 1555 2.21 LINK O THR A 251 MG MG A1255 1555 1555 2.57 LINK O THR A 251 MG MG A1255 4576 1555 2.08 LINK MG MG A1254 O HOH A2113 1555 1555 2.59 LINK MG MG A1254 O HOH A2282 1555 1555 2.50 LINK MG MG A1255 O HOH A2277 1555 4576 2.45 CISPEP 1 ARG A 81 PRO A 82 0 -1.76 CISPEP 2 GLY A 90 ILE A 91 0 -5.12 SITE 1 AC1 6 ASP A 8 ASP A 9 SER A 39 ASN A 92 SITE 2 AC1 6 HOH A2113 HOH A2282 SITE 1 AC2 3 GLY A 248 THR A 251 HOH A2277 SITE 1 AC3 3 ASP A 100 HOH A2280 HOH A2281 SITE 1 AC4 7 PRO A 95 ASN A 96 ASP A 100 HOH A2282 SITE 2 AC4 7 HOH A2283 HOH A2284 HOH A2285 CRYST1 73.730 121.638 143.256 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013563 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008221 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006981 0.00000