HEADER LIGASE 02-OCT-08 2V59 TITLE CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E.COLI IN COMPLEX WITH TITLE 2 POTENT INHIBITOR 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOTIN CARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ACETYL-COA CARBOXYLASE SUBUNIT A; COMPND 5 EC: 6.3.4.14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FATTY ACID BIOSYNTHESIS, BIOTIN CARBOXYLASE, NUCLEOTIDE-BINDING, ATP- KEYWDS 2 BINDING, ANTIBACTERIAL, LIPID SYNTHESIS, FAS, LIGASE, BIOTIN, KEYWDS 3 BACTERIAL, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR I.MOCHALKIN,J.R.MILLER REVDAT 5 13-DEC-23 2V59 1 REMARK REVDAT 4 13-JUL-11 2V59 1 VERSN REVDAT 3 24-FEB-09 2V59 1 JRNL REMARK REVDAT 2 03-FEB-09 2V59 1 JRNL REMARK REVDAT 1 13-JAN-09 2V59 0 JRNL AUTH J.R.MILLER,S.DUNHAM,I.MOCHALKIN,C.BANOTAI,M.BOWMAN,S.BUIST, JRNL AUTH 2 B.DUNKLE,D.HANNA,H.J.HARWOOD,M.D.HUBAND,A.KARNOVSKY,M.KUHN, JRNL AUTH 3 C.LIMBERAKIS,J.Y.LIU,S.MEHRENS,W.T.MUELLER,L.NARASIMHAN, JRNL AUTH 4 A.OGDEN,J.OHREN,J.V.PRASAD,J.A.SHELLY,L.SKERLOS,M.SULAVIK, JRNL AUTH 5 V.H.THOMAS,S.VANDERROEST,L.WANG,Z.WANG,A.WHITTON,T.ZHU, JRNL AUTH 6 C.K.STOVER JRNL TITL A CLASS OF SELECTIVE ANTIBACTERIALS DERIVED FROM A PROTEIN JRNL TITL 2 KINASE INHIBITOR PHARMACOPHORE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 1737 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19164768 JRNL DOI 10.1073/PNAS.0811275106 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 38720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2055 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2110 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6850 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 236 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.437 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.267 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.173 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.092 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7034 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9496 ; 1.023 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 889 ; 5.089 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 314 ;34.452 ;23.631 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1225 ;15.229 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 58 ;17.329 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1037 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5346 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3146 ; 0.173 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4826 ; 0.294 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 357 ; 0.128 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.161 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.122 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4567 ; 0.358 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7079 ; 0.606 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2829 ; 0.895 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2417 ; 1.522 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 445 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7789 -19.5424 24.6026 REMARK 3 T TENSOR REMARK 3 T11: -0.0744 T22: -0.0811 REMARK 3 T33: -0.0236 T12: 0.0094 REMARK 3 T13: -0.0058 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.5821 L22: 0.4768 REMARK 3 L33: 0.4409 L12: 0.1359 REMARK 3 L13: 0.1045 L23: 0.1464 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: -0.0391 S13: 0.0133 REMARK 3 S21: -0.0146 S22: 0.0094 S23: 0.0189 REMARK 3 S31: -0.0205 S32: 0.0073 S33: 0.0002 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 445 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0396 -0.6987 -6.9850 REMARK 3 T TENSOR REMARK 3 T11: -0.0858 T22: -0.0372 REMARK 3 T33: -0.0024 T12: -0.0103 REMARK 3 T13: 0.0147 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.6846 L22: 1.0498 REMARK 3 L33: 1.1413 L12: -0.3278 REMARK 3 L13: 0.2964 L23: 0.0251 REMARK 3 S TENSOR REMARK 3 S11: -0.0333 S12: -0.1401 S13: -0.0190 REMARK 3 S21: 0.1100 S22: 0.0479 S23: 0.1378 REMARK 3 S31: -0.0233 S32: -0.2527 S33: -0.0146 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2V59 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1290037725. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40822 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 4.060 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1DV2 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WELL: 0.1 M POTASSIUM CHLORIDE, 4% REMARK 280 (W/V) PEG 8000 PROTEIN: 12 MG/ML, 250 MM POTASSIUM CHLORIDE, 10 REMARK 280 MM HEPES, PH 7.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.09500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.52750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.10150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.52750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.09500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.10150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 446 REMARK 465 GLN A 447 REMARK 465 GLU A 448 REMARK 465 LYS A 449 REMARK 465 LEU B 446 REMARK 465 GLN B 447 REMARK 465 GLU B 448 REMARK 465 LYS B 449 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 59 -83.30 -124.92 REMARK 500 PHE A 84 -93.79 -120.61 REMARK 500 LEU A 225 61.64 -119.37 REMARK 500 ALA A 226 -162.60 57.99 REMARK 500 MET A 232 90.64 -67.36 REMARK 500 THR A 291 54.02 -103.94 REMARK 500 ASN B 9 -168.91 -167.64 REMARK 500 SER B 59 -85.40 -129.86 REMARK 500 PHE B 84 -90.07 -113.60 REMARK 500 ALA B 192 -62.28 -95.98 REMARK 500 ALA B 226 -162.00 54.16 REMARK 500 MET B 232 92.75 -69.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LZK A1446 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LZK B1446 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2J9G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E. COLI IN COMPLEX REMARK 900 WITH AMPPNP AND ADP REMARK 900 RELATED ID: 2VR1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E. COLI IN COMPLEX REMARK 900 WITH ATP ANALOG, ADPCF2P. REMARK 900 RELATED ID: 2GPW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BIOTIN CARBOXYLASE SUBUNIT, F363AMUTANT, REMARK 900 OF ACETYL-COA CARBOXYLASE FROM ESCHERICHIA COLI. REMARK 900 RELATED ID: 1K69 RELATED DB: PDB REMARK 900 MODEL INTERACTION BETWEEN BCCP AND ATP-BOUND CARBOXYLASESUBUNIT OF REMARK 900 ACETYL COA CARBOXYLASE REMARK 900 RELATED ID: 1DV1 RELATED DB: PDB REMARK 900 STRUCTURE OF BIOTIN CARBOXYLASE (APO) REMARK 900 RELATED ID: 1BNC RELATED DB: PDB REMARK 900 RELATED ID: 2GPS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BIOTIN CARBOXYLASE SUBUNIT, E23RMUTANT, OF REMARK 900 ACETYL-COA CARBOXYLASE FROM ESCHERICHIA COLI. REMARK 900 RELATED ID: 1DV2 RELATED DB: PDB REMARK 900 THE STRUCTURE OF BIOTIN CARBOXYLASE, MUTANT E288K, COMPLEXED WITH REMARK 900 ATP REMARK 900 RELATED ID: 2V58 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E.COLI IN COMPLEX WITH REMARK 900 POTENT INHIBITOR 1 REMARK 900 RELATED ID: 2V5A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE FROM E.COLI IN COMPLEX WITH REMARK 900 POTENT INHIBITOR 3 DBREF 2V59 A 1 449 UNP P24182 ACCC_ECOLI 1 449 DBREF 2V59 B 1 449 UNP P24182 ACCC_ECOLI 1 449 SEQRES 1 A 449 MET LEU ASP LYS ILE VAL ILE ALA ASN ARG GLY GLU ILE SEQRES 2 A 449 ALA LEU ARG ILE LEU ARG ALA CYS LYS GLU LEU GLY ILE SEQRES 3 A 449 LYS THR VAL ALA VAL HIS SER SER ALA ASP ARG ASP LEU SEQRES 4 A 449 LYS HIS VAL LEU LEU ALA ASP GLU THR VAL CYS ILE GLY SEQRES 5 A 449 PRO ALA PRO SER VAL LYS SER TYR LEU ASN ILE PRO ALA SEQRES 6 A 449 ILE ILE SER ALA ALA GLU ILE THR GLY ALA VAL ALA ILE SEQRES 7 A 449 HIS PRO GLY TYR GLY PHE LEU SER GLU ASN ALA ASN PHE SEQRES 8 A 449 ALA GLU GLN VAL GLU ARG SER GLY PHE ILE PHE ILE GLY SEQRES 9 A 449 PRO LYS ALA GLU THR ILE ARG LEU MET GLY ASP LYS VAL SEQRES 10 A 449 SER ALA ILE ALA ALA MET LYS LYS ALA GLY VAL PRO CYS SEQRES 11 A 449 VAL PRO GLY SER ASP GLY PRO LEU GLY ASP ASP MET ASP SEQRES 12 A 449 LYS ASN ARG ALA ILE ALA LYS ARG ILE GLY TYR PRO VAL SEQRES 13 A 449 ILE ILE LYS ALA SER GLY GLY GLY GLY GLY ARG GLY MET SEQRES 14 A 449 ARG VAL VAL ARG GLY ASP ALA GLU LEU ALA GLN SER ILE SEQRES 15 A 449 SER MET THR ARG ALA GLU ALA LYS ALA ALA PHE SER ASN SEQRES 16 A 449 ASP MET VAL TYR MET GLU LYS TYR LEU GLU ASN PRO ARG SEQRES 17 A 449 HIS VAL GLU ILE GLN VAL LEU ALA ASP GLY GLN GLY ASN SEQRES 18 A 449 ALA ILE TYR LEU ALA GLU ARG ASP CYS SER MET GLN ARG SEQRES 19 A 449 ARG HIS GLN LYS VAL VAL GLU GLU ALA PRO ALA PRO GLY SEQRES 20 A 449 ILE THR PRO GLU LEU ARG ARG TYR ILE GLY GLU ARG CYS SEQRES 21 A 449 ALA LYS ALA CYS VAL ASP ILE GLY TYR ARG GLY ALA GLY SEQRES 22 A 449 THR PHE GLU PHE LEU PHE GLU ASN GLY GLU PHE TYR PHE SEQRES 23 A 449 ILE GLU MET ASN THR ARG ILE GLN VAL GLU HIS PRO VAL SEQRES 24 A 449 THR GLU MET ILE THR GLY VAL ASP LEU ILE LYS GLU GLN SEQRES 25 A 449 LEU ARG ILE ALA ALA GLY GLN PRO LEU SER ILE LYS GLN SEQRES 26 A 449 GLU GLU VAL HIS VAL ARG GLY HIS ALA VAL GLU CYS ARG SEQRES 27 A 449 ILE ASN ALA GLU ASP PRO ASN THR PHE LEU PRO SER PRO SEQRES 28 A 449 GLY LYS ILE THR ARG PHE HIS ALA PRO GLY GLY PHE GLY SEQRES 29 A 449 VAL ARG TRP GLU SER HIS ILE TYR ALA GLY TYR THR VAL SEQRES 30 A 449 PRO PRO TYR TYR ASP SER MET ILE GLY LYS LEU ILE CYS SEQRES 31 A 449 TYR GLY GLU ASN ARG ASP VAL ALA ILE ALA ARG MET LYS SEQRES 32 A 449 ASN ALA LEU GLN GLU LEU ILE ILE ASP GLY ILE LYS THR SEQRES 33 A 449 ASN VAL ASP LEU GLN ILE ARG ILE MET ASN ASP GLU ASN SEQRES 34 A 449 PHE GLN HIS GLY GLY THR ASN ILE HIS TYR LEU GLU LYS SEQRES 35 A 449 LYS LEU GLY LEU GLN GLU LYS SEQRES 1 B 449 MET LEU ASP LYS ILE VAL ILE ALA ASN ARG GLY GLU ILE SEQRES 2 B 449 ALA LEU ARG ILE LEU ARG ALA CYS LYS GLU LEU GLY ILE SEQRES 3 B 449 LYS THR VAL ALA VAL HIS SER SER ALA ASP ARG ASP LEU SEQRES 4 B 449 LYS HIS VAL LEU LEU ALA ASP GLU THR VAL CYS ILE GLY SEQRES 5 B 449 PRO ALA PRO SER VAL LYS SER TYR LEU ASN ILE PRO ALA SEQRES 6 B 449 ILE ILE SER ALA ALA GLU ILE THR GLY ALA VAL ALA ILE SEQRES 7 B 449 HIS PRO GLY TYR GLY PHE LEU SER GLU ASN ALA ASN PHE SEQRES 8 B 449 ALA GLU GLN VAL GLU ARG SER GLY PHE ILE PHE ILE GLY SEQRES 9 B 449 PRO LYS ALA GLU THR ILE ARG LEU MET GLY ASP LYS VAL SEQRES 10 B 449 SER ALA ILE ALA ALA MET LYS LYS ALA GLY VAL PRO CYS SEQRES 11 B 449 VAL PRO GLY SER ASP GLY PRO LEU GLY ASP ASP MET ASP SEQRES 12 B 449 LYS ASN ARG ALA ILE ALA LYS ARG ILE GLY TYR PRO VAL SEQRES 13 B 449 ILE ILE LYS ALA SER GLY GLY GLY GLY GLY ARG GLY MET SEQRES 14 B 449 ARG VAL VAL ARG GLY ASP ALA GLU LEU ALA GLN SER ILE SEQRES 15 B 449 SER MET THR ARG ALA GLU ALA LYS ALA ALA PHE SER ASN SEQRES 16 B 449 ASP MET VAL TYR MET GLU LYS TYR LEU GLU ASN PRO ARG SEQRES 17 B 449 HIS VAL GLU ILE GLN VAL LEU ALA ASP GLY GLN GLY ASN SEQRES 18 B 449 ALA ILE TYR LEU ALA GLU ARG ASP CYS SER MET GLN ARG SEQRES 19 B 449 ARG HIS GLN LYS VAL VAL GLU GLU ALA PRO ALA PRO GLY SEQRES 20 B 449 ILE THR PRO GLU LEU ARG ARG TYR ILE GLY GLU ARG CYS SEQRES 21 B 449 ALA LYS ALA CYS VAL ASP ILE GLY TYR ARG GLY ALA GLY SEQRES 22 B 449 THR PHE GLU PHE LEU PHE GLU ASN GLY GLU PHE TYR PHE SEQRES 23 B 449 ILE GLU MET ASN THR ARG ILE GLN VAL GLU HIS PRO VAL SEQRES 24 B 449 THR GLU MET ILE THR GLY VAL ASP LEU ILE LYS GLU GLN SEQRES 25 B 449 LEU ARG ILE ALA ALA GLY GLN PRO LEU SER ILE LYS GLN SEQRES 26 B 449 GLU GLU VAL HIS VAL ARG GLY HIS ALA VAL GLU CYS ARG SEQRES 27 B 449 ILE ASN ALA GLU ASP PRO ASN THR PHE LEU PRO SER PRO SEQRES 28 B 449 GLY LYS ILE THR ARG PHE HIS ALA PRO GLY GLY PHE GLY SEQRES 29 B 449 VAL ARG TRP GLU SER HIS ILE TYR ALA GLY TYR THR VAL SEQRES 30 B 449 PRO PRO TYR TYR ASP SER MET ILE GLY LYS LEU ILE CYS SEQRES 31 B 449 TYR GLY GLU ASN ARG ASP VAL ALA ILE ALA ARG MET LYS SEQRES 32 B 449 ASN ALA LEU GLN GLU LEU ILE ILE ASP GLY ILE LYS THR SEQRES 33 B 449 ASN VAL ASP LEU GLN ILE ARG ILE MET ASN ASP GLU ASN SEQRES 34 B 449 PHE GLN HIS GLY GLY THR ASN ILE HIS TYR LEU GLU LYS SEQRES 35 B 449 LYS LEU GLY LEU GLN GLU LYS HET LZK A1446 22 HET LZK B1446 22 HETNAM LZK 6-(2,6-DIMETHOXYPHENYL)PYRIDO[2,3-D]PYRIMIDINE-2,7- HETNAM 2 LZK DIAMINE FORMUL 3 LZK 2(C15 H15 N5 O2) FORMUL 5 HOH *236(H2 O) HELIX 1 1 ARG A 10 LEU A 24 1 15 HELIX 2 2 ALA A 35 ARG A 37 5 3 HELIX 3 3 LEU A 39 ALA A 45 1 7 HELIX 4 4 PRO A 55 SER A 59 5 5 HELIX 5 5 ASN A 62 GLY A 74 1 13 HELIX 6 6 ASN A 88 GLY A 99 1 12 HELIX 7 7 LYS A 106 ASP A 115 1 10 HELIX 8 8 ASP A 115 GLY A 127 1 13 HELIX 9 9 ASP A 141 GLY A 153 1 13 HELIX 10 10 GLY A 174 SER A 194 1 21 HELIX 11 11 THR A 249 GLY A 268 1 20 HELIX 12 12 HIS A 297 GLY A 305 1 9 HELIX 13 13 ASP A 307 ALA A 317 1 11 HELIX 14 14 LYS A 324 VAL A 328 5 5 HELIX 15 15 ASN A 394 LEU A 409 1 16 HELIX 16 16 ASN A 417 ASN A 426 1 10 HELIX 17 17 ASP A 427 GLY A 433 1 7 HELIX 18 18 HIS A 438 GLY A 445 1 8 HELIX 19 19 ARG B 10 GLY B 25 1 16 HELIX 20 20 SER B 33 ARG B 37 5 5 HELIX 21 21 LEU B 39 ALA B 45 1 7 HELIX 22 22 PRO B 55 SER B 59 5 5 HELIX 23 23 ASN B 62 THR B 73 1 12 HELIX 24 24 ASN B 88 SER B 98 1 11 HELIX 25 25 LYS B 106 ASP B 115 1 10 HELIX 26 26 ASP B 115 GLY B 127 1 13 HELIX 27 27 ASP B 141 GLY B 153 1 13 HELIX 28 28 GLU B 177 SER B 194 1 18 HELIX 29 29 THR B 249 GLY B 268 1 20 HELIX 30 30 GLU B 296 GLY B 305 1 10 HELIX 31 31 ASP B 307 ALA B 317 1 11 HELIX 32 32 LYS B 324 VAL B 328 5 5 HELIX 33 33 ASN B 394 LEU B 409 1 16 HELIX 34 34 ASN B 417 ASN B 426 1 10 HELIX 35 35 ASP B 427 GLY B 433 1 7 HELIX 36 36 HIS B 438 LEU B 444 1 7 SHEET 1 AA 5 GLU A 47 GLY A 52 0 SHEET 2 AA 5 LYS A 27 SER A 33 1 O THR A 28 N GLU A 47 SHEET 3 AA 5 LYS A 4 ILE A 7 1 O ILE A 5 N VAL A 29 SHEET 4 AA 5 ALA A 77 HIS A 79 1 O ALA A 77 N VAL A 6 SHEET 5 AA 5 ILE A 101 PHE A 102 1 O ILE A 101 N ILE A 78 SHEET 1 AB 3 ARG A 167 VAL A 172 0 SHEET 2 AB 3 VAL A 156 GLY A 164 -1 O VAL A 156 N VAL A 172 SHEET 3 AB 3 VAL A 198 LYS A 202 -1 O TYR A 199 N LYS A 159 SHEET 1 AC 8 GLU A 283 ASN A 290 0 SHEET 2 AC 8 GLY A 271 GLU A 280 -1 O THR A 274 N ASN A 290 SHEET 3 AC 8 ARG A 208 ALA A 216 -1 O ARG A 208 N PHE A 279 SHEET 4 AC 8 ALA A 222 ARG A 234 -1 O ILE A 223 N LEU A 215 SHEET 5 AC 8 GLN A 237 ALA A 243 -1 O GLN A 237 N ARG A 234 SHEET 6 AC 8 HIS A 333 ASN A 340 -1 O ALA A 334 N ALA A 243 SHEET 7 AC 8 MET A 384 GLY A 392 -1 N ILE A 385 O ILE A 339 SHEET 8 AC 8 VAL A 365 SER A 369 -1 O ARG A 366 N ILE A 389 SHEET 1 AD 2 GLY A 352 LYS A 353 0 SHEET 2 AD 2 THR A 376 VAL A 377 -1 O VAL A 377 N GLY A 352 SHEET 1 AE 2 ARG A 356 HIS A 358 0 SHEET 2 AE 2 ILE A 410 ASP A 412 -1 O ILE A 410 N HIS A 358 SHEET 1 BA 5 GLU B 47 CYS B 50 0 SHEET 2 BA 5 LYS B 27 HIS B 32 1 O THR B 28 N GLU B 47 SHEET 3 BA 5 LYS B 4 ILE B 7 1 O ILE B 5 N VAL B 29 SHEET 4 BA 5 ALA B 77 HIS B 79 1 O ALA B 77 N VAL B 6 SHEET 5 BA 5 ILE B 101 PHE B 102 1 O ILE B 101 N ILE B 78 SHEET 1 BB 3 MET B 169 VAL B 172 0 SHEET 2 BB 3 VAL B 156 ALA B 160 -1 O VAL B 156 N VAL B 172 SHEET 3 BB 3 VAL B 198 LYS B 202 -1 O TYR B 199 N LYS B 159 SHEET 1 BC 8 GLU B 283 ASN B 290 0 SHEET 2 BC 8 ARG B 270 GLU B 280 -1 O THR B 274 N ASN B 290 SHEET 3 BC 8 ARG B 208 ASP B 217 -1 O ARG B 208 N PHE B 279 SHEET 4 BC 8 ALA B 222 ARG B 234 -1 O ILE B 223 N LEU B 215 SHEET 5 BC 8 GLN B 237 ALA B 243 -1 O GLN B 237 N ARG B 234 SHEET 6 BC 8 HIS B 333 ASN B 340 -1 O ALA B 334 N ALA B 243 SHEET 7 BC 8 MET B 384 GLY B 392 -1 N ILE B 385 O ILE B 339 SHEET 8 BC 8 VAL B 365 SER B 369 -1 O ARG B 366 N ILE B 389 SHEET 1 BD 2 GLY B 352 LYS B 353 0 SHEET 2 BD 2 THR B 376 VAL B 377 -1 O VAL B 377 N GLY B 352 SHEET 1 BE 2 ARG B 356 HIS B 358 0 SHEET 2 BE 2 ILE B 410 ASP B 412 -1 O ILE B 410 N HIS B 358 CISPEP 1 TYR A 154 PRO A 155 0 2.32 CISPEP 2 ARG A 167 GLY A 168 0 -17.31 CISPEP 3 ALA A 243 PRO A 244 0 -7.77 CISPEP 4 TYR B 154 PRO B 155 0 2.16 CISPEP 5 GLY B 163 GLY B 164 0 -2.54 CISPEP 6 ALA B 243 PRO B 244 0 -10.71 SITE 1 AC1 12 VAL A 131 ILE A 157 LYS A 159 GLU A 201 SITE 2 AC1 12 LYS A 202 TYR A 203 LEU A 204 HIS A 209 SITE 3 AC1 12 GLN A 233 HIS A 236 LEU A 278 ILE A 437 SITE 1 AC2 13 ILE B 157 LYS B 159 MET B 169 GLU B 201 SITE 2 AC2 13 LYS B 202 TYR B 203 LEU B 204 HIS B 209 SITE 3 AC2 13 GLN B 233 HIS B 236 LEU B 278 ILE B 287 SITE 4 AC2 13 ILE B 437 CRYST1 84.190 106.203 123.055 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011878 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009416 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008126 0.00000