data_2V5G # _entry.id 2V5G # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.312 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2V5G PDBE EBI-36964 WWPDB D_1290036964 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2W0R _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'CRYSTAL STRUCTURE OF THE MUTATED N263D YSCU C-TERMINAL DOMAIN' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2V5G _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2008-10-06 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wiesand, U.' 1 'Sorg, I.' 2 'Amstutz, M.' 3 'Wagner, S.' 4 'Van Den Heuvel, J.' 5 'Luehrs, T.' 6 'Cornelis, G.R.' 7 'Heinz, D.W.' 8 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structure of the Type III Secretion Recognition Protein Yscu from Yersinia Enterocolitica' J.Mol.Biol. 385 854 ? 2009 JMOBAK UK 0022-2836 0070 ? 18976663 10.1016/J.JMB.2008.10.034 1 'Yscu, a Yersinia Enterocolitica Inner Membrane Protein Involved in Yop Secretion.' J.Bacteriol. 176 4534 ? 1994 JOBAAY US 0021-9193 0767 ? 8045883 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wiesand, U.' 1 ? primary 'Sorg, I.' 2 ? primary 'Amstutz, M.' 3 ? primary 'Wagner, S.' 4 ? primary 'Van Den Heuvel, J.' 5 ? primary 'Luehrs, T.' 6 ? primary 'Cornelis, G.R.' 7 ? primary 'Heinz, D.W.' 8 ? 1 'Allaoui, A.' 9 ? 1 'Woestyn, S.' 10 ? 1 'Sluiters, C.' 11 ? 1 'Cornelis, G.R.' 12 ? # _cell.entry_id 2V5G _cell.length_a 66.297 _cell.length_b 66.297 _cell.length_c 68.500 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V5G _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man YSCU 16994.943 1 ? YES 'C-TERMINAL DOMAIN, RESIDUES 211-354' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 water nat water 18.015 52 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;IKELK(MSE)SKDEIKREYKE(MSE)EGSPEIKSKRRQFHQEIQSGN(MSE)RENVKRSSVVVAAPTHIAIGILYKRGET PLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQHSE(MSE)L ; _entity_poly.pdbx_seq_one_letter_code_can ;IKELKMSKDEIKREYKEMEGSPEIKSKRRQFHQEIQSGNMRENVKRSSVVVAAPTHIAIGILYKRGETPLPLVTFKYTDA QVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAEVLRWLERQNIEKQHSEML ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 LYS n 1 3 GLU n 1 4 LEU n 1 5 LYS n 1 6 MSE n 1 7 SER n 1 8 LYS n 1 9 ASP n 1 10 GLU n 1 11 ILE n 1 12 LYS n 1 13 ARG n 1 14 GLU n 1 15 TYR n 1 16 LYS n 1 17 GLU n 1 18 MSE n 1 19 GLU n 1 20 GLY n 1 21 SER n 1 22 PRO n 1 23 GLU n 1 24 ILE n 1 25 LYS n 1 26 SER n 1 27 LYS n 1 28 ARG n 1 29 ARG n 1 30 GLN n 1 31 PHE n 1 32 HIS n 1 33 GLN n 1 34 GLU n 1 35 ILE n 1 36 GLN n 1 37 SER n 1 38 GLY n 1 39 ASN n 1 40 MSE n 1 41 ARG n 1 42 GLU n 1 43 ASN n 1 44 VAL n 1 45 LYS n 1 46 ARG n 1 47 SER n 1 48 SER n 1 49 VAL n 1 50 VAL n 1 51 VAL n 1 52 ALA n 1 53 ALA n 1 54 PRO n 1 55 THR n 1 56 HIS n 1 57 ILE n 1 58 ALA n 1 59 ILE n 1 60 GLY n 1 61 ILE n 1 62 LEU n 1 63 TYR n 1 64 LYS n 1 65 ARG n 1 66 GLY n 1 67 GLU n 1 68 THR n 1 69 PRO n 1 70 LEU n 1 71 PRO n 1 72 LEU n 1 73 VAL n 1 74 THR n 1 75 PHE n 1 76 LYS n 1 77 TYR n 1 78 THR n 1 79 ASP n 1 80 ALA n 1 81 GLN n 1 82 VAL n 1 83 GLN n 1 84 THR n 1 85 VAL n 1 86 ARG n 1 87 LYS n 1 88 ILE n 1 89 ALA n 1 90 GLU n 1 91 GLU n 1 92 GLU n 1 93 GLY n 1 94 VAL n 1 95 PRO n 1 96 ILE n 1 97 LEU n 1 98 GLN n 1 99 ARG n 1 100 ILE n 1 101 PRO n 1 102 LEU n 1 103 ALA n 1 104 ARG n 1 105 ALA n 1 106 LEU n 1 107 TYR n 1 108 TRP n 1 109 ASP n 1 110 ALA n 1 111 LEU n 1 112 VAL n 1 113 ASP n 1 114 HIS n 1 115 TYR n 1 116 ILE n 1 117 PRO n 1 118 ALA n 1 119 GLU n 1 120 GLN n 1 121 ILE n 1 122 GLU n 1 123 ALA n 1 124 THR n 1 125 ALA n 1 126 GLU n 1 127 VAL n 1 128 LEU n 1 129 ARG n 1 130 TRP n 1 131 LEU n 1 132 GLU n 1 133 ARG n 1 134 GLN n 1 135 ASN n 1 136 ILE n 1 137 GLU n 1 138 LYS n 1 139 GLN n 1 140 HIS n 1 141 SER n 1 142 GLU n 1 143 MSE n 1 144 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain W22703 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'YERSINIA ENTEROCOLITICA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'TUNER DE3' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PGEX-6-P1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q56844_YEREN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q56844 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2V5G _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 144 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q56844 _struct_ref_seq.db_align_beg 211 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 354 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 211 _struct_ref_seq.pdbx_auth_seq_align_end 354 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2V5G _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 53 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q56844 _struct_ref_seq_dif.db_mon_id ASN _struct_ref_seq_dif.pdbx_seq_db_seq_num 263 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 263 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2V5G _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.23 _exptl_crystal.density_percent_sol 45 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;HANGING DROP METHOD USING 3 UL OF A 8 MG/ML PROTEIN SOLUTION MIXED WITH 3UL RESERVOIR BUFFER (1.6 M (NH4)2SO4, 0.2 M NACL, 0.1 M HEPES PH 7.5) IN THE DROPLET. ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2007-06-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97854 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X12' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X12 _diffrn_source.pdbx_wavelength 0.97854 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2V5G _reflns.observed_criterion_sigma_I 2.2 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.00 _reflns.d_resolution_high 2.05 _reflns.number_obs 10836 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.10 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 13.6 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.05 _reflns_shell.d_res_low 2.11 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.35 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.20 _reflns_shell.pdbx_redundancy 13.6 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2V5G _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10436 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.84 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.7 _refine.ls_R_factor_obs 0.222 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.221 _refine.ls_R_factor_R_free 0.253 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 3.000 _refine.ls_number_reflns_R_free 328 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.932 _refine.correlation_coeff_Fo_to_Fc_free 0.924 _refine.B_iso_mean 30.46 _refine.aniso_B[1][1] -0.33000 _refine.aniso_B[2][2] -0.33000 _refine.aniso_B[3][3] 0.66000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. MISSING RESIDUES 211-221 AND 343-354 DUE TO WEAK DENSITY' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.188 _refine.pdbx_overall_ESU_R_Free 0.164 _refine.overall_SU_ML 0.126 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.549 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 976 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 52 _refine_hist.number_atoms_total 1029 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 29.84 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.022 ? 1054 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.756 1.965 ? 1435 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.263 5.000 ? 132 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.443 22.692 ? 52 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.975 15.000 ? 201 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.906 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.114 0.200 ? 158 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 805 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.206 0.200 ? 487 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.291 0.200 ? 716 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.140 0.200 ? 56 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.167 0.200 ? 47 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.144 0.200 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.049 2.000 ? 660 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3.052 3.000 ? 1031 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.398 2.500 ? 458 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.298 3.000 ? 399 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.05 _refine_ls_shell.number_reflns_R_work 734 _refine_ls_shell.R_factor_R_work 0.2330 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2190 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 18 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2V5G _struct.title 'Crystal structure of the mutated N263A YscU C-terminal domain' _struct.pdbx_descriptor YSCU _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2V5G _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text 'MEMBRANE PROTEIN, PLASMID, AUTOCLEAVAGE, RECOGNITION PROTEIN, TYPE III SECRETION SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 21 ? ILE A 35 ? SER A 231 ILE A 245 1 ? 15 HELX_P HELX_P2 2 ASN A 39 ? ARG A 46 ? ASN A 249 ARG A 256 1 ? 8 HELX_P HELX_P3 3 ALA A 80 ? GLY A 93 ? ALA A 290 GLY A 303 1 ? 14 HELX_P HELX_P4 4 ARG A 99 ? ALA A 110 ? ARG A 309 ALA A 320 1 ? 12 HELX_P HELX_P5 5 PRO A 117 ? GLU A 119 ? PRO A 327 GLU A 329 5 ? 3 HELX_P HELX_P6 6 GLN A 120 ? LEU A 131 ? GLN A 330 LEU A 341 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A GLU 17 C ? ? ? 1_555 A MSE 18 N ? ? A GLU 227 A MSE 228 1_555 ? ? ? ? ? ? ? 1.335 ? covale2 covale both ? A MSE 18 C ? ? ? 1_555 A GLU 19 N ? ? A MSE 228 A GLU 229 1_555 ? ? ? ? ? ? ? 1.327 ? covale3 covale both ? A ASN 39 C ? ? ? 1_555 A MSE 40 N ? ? A ASN 249 A MSE 250 1_555 ? ? ? ? ? ? ? 1.316 ? covale4 covale both ? A MSE 40 C ? ? ? 1_555 A ARG 41 N ? ? A MSE 250 A ARG 251 1_555 ? ? ? ? ? ? ? 1.332 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 37 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 247 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 GLY _struct_mon_prot_cis.pdbx_label_seq_id_2 38 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 GLY _struct_mon_prot_cis.pdbx_auth_seq_id_2 248 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 7.56 # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LEU A 72 ? THR A 78 ? LEU A 282 THR A 288 AA 2 ILE A 57 ? LEU A 62 ? ILE A 267 LEU A 272 AA 3 VAL A 49 ? ALA A 53 ? VAL A 259 ALA A 263 AA 4 ILE A 96 ? GLN A 98 ? ILE A 306 GLN A 308 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N TYR A 77 ? N TYR A 287 O ALA A 58 ? O ALA A 268 AA 2 3 N ILE A 61 ? N ILE A 271 O VAL A 49 ? O VAL A 259 AA 3 4 N ALA A 52 ? N ALA A 262 O LEU A 97 ? O LEU A 307 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE CL A1342' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLU A 14 ? GLU A 224 . ? 1_555 ? 2 AC1 4 TYR A 15 ? TYR A 225 . ? 1_555 ? 3 AC1 4 LYS A 27 ? LYS A 237 . ? 1_555 ? 4 AC1 4 HOH C . ? HOH A 2004 . ? 1_555 ? # _database_PDB_matrix.entry_id 2V5G _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2V5G _atom_sites.fract_transf_matrix[1][1] 0.015084 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015084 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014599 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 211 ? ? ? A . n A 1 2 LYS 2 212 ? ? ? A . n A 1 3 GLU 3 213 ? ? ? A . n A 1 4 LEU 4 214 ? ? ? A . n A 1 5 LYS 5 215 ? ? ? A . n A 1 6 MSE 6 216 ? ? ? A . n A 1 7 SER 7 217 ? ? ? A . n A 1 8 LYS 8 218 ? ? ? A . n A 1 9 ASP 9 219 ? ? ? A . n A 1 10 GLU 10 220 ? ? ? A . n A 1 11 ILE 11 221 ? ? ? A . n A 1 12 LYS 12 222 222 LYS LYS A . n A 1 13 ARG 13 223 223 ARG ARG A . n A 1 14 GLU 14 224 224 GLU GLU A . n A 1 15 TYR 15 225 225 TYR TYR A . n A 1 16 LYS 16 226 226 LYS LYS A . n A 1 17 GLU 17 227 227 GLU GLU A . n A 1 18 MSE 18 228 228 MSE MSE A . n A 1 19 GLU 19 229 229 GLU GLU A . n A 1 20 GLY 20 230 230 GLY GLY A . n A 1 21 SER 21 231 231 SER SER A . n A 1 22 PRO 22 232 232 PRO PRO A . n A 1 23 GLU 23 233 233 GLU GLU A . n A 1 24 ILE 24 234 234 ILE ILE A . n A 1 25 LYS 25 235 235 LYS LYS A . n A 1 26 SER 26 236 236 SER SER A . n A 1 27 LYS 27 237 237 LYS LYS A . n A 1 28 ARG 28 238 238 ARG ARG A . n A 1 29 ARG 29 239 239 ARG ARG A . n A 1 30 GLN 30 240 240 GLN GLN A . n A 1 31 PHE 31 241 241 PHE PHE A . n A 1 32 HIS 32 242 242 HIS HIS A . n A 1 33 GLN 33 243 243 GLN GLN A . n A 1 34 GLU 34 244 244 GLU GLU A . n A 1 35 ILE 35 245 245 ILE ILE A . n A 1 36 GLN 36 246 246 GLN GLN A . n A 1 37 SER 37 247 247 SER SER A . n A 1 38 GLY 38 248 248 GLY GLY A . n A 1 39 ASN 39 249 249 ASN ASN A . n A 1 40 MSE 40 250 250 MSE MSE A . n A 1 41 ARG 41 251 251 ARG ARG A . n A 1 42 GLU 42 252 252 GLU GLU A . n A 1 43 ASN 43 253 253 ASN ASN A . n A 1 44 VAL 44 254 254 VAL VAL A . n A 1 45 LYS 45 255 255 LYS LYS A . n A 1 46 ARG 46 256 256 ARG ARG A . n A 1 47 SER 47 257 257 SER SER A . n A 1 48 SER 48 258 258 SER SER A . n A 1 49 VAL 49 259 259 VAL VAL A . n A 1 50 VAL 50 260 260 VAL VAL A . n A 1 51 VAL 51 261 261 VAL VAL A . n A 1 52 ALA 52 262 262 ALA ALA A . n A 1 53 ALA 53 263 263 ALA ALA A . n A 1 54 PRO 54 264 264 PRO PRO A . n A 1 55 THR 55 265 265 THR THR A . n A 1 56 HIS 56 266 266 HIS HIS A . n A 1 57 ILE 57 267 267 ILE ILE A . n A 1 58 ALA 58 268 268 ALA ALA A . n A 1 59 ILE 59 269 269 ILE ILE A . n A 1 60 GLY 60 270 270 GLY GLY A . n A 1 61 ILE 61 271 271 ILE ILE A . n A 1 62 LEU 62 272 272 LEU LEU A . n A 1 63 TYR 63 273 273 TYR TYR A . n A 1 64 LYS 64 274 274 LYS LYS A . n A 1 65 ARG 65 275 275 ARG ARG A . n A 1 66 GLY 66 276 276 GLY GLY A . n A 1 67 GLU 67 277 277 GLU GLU A . n A 1 68 THR 68 278 278 THR THR A . n A 1 69 PRO 69 279 279 PRO PRO A . n A 1 70 LEU 70 280 280 LEU LEU A . n A 1 71 PRO 71 281 281 PRO PRO A . n A 1 72 LEU 72 282 282 LEU LEU A . n A 1 73 VAL 73 283 283 VAL VAL A . n A 1 74 THR 74 284 284 THR THR A . n A 1 75 PHE 75 285 285 PHE PHE A . n A 1 76 LYS 76 286 286 LYS LYS A . n A 1 77 TYR 77 287 287 TYR TYR A . n A 1 78 THR 78 288 288 THR THR A . n A 1 79 ASP 79 289 289 ASP ASP A . n A 1 80 ALA 80 290 290 ALA ALA A . n A 1 81 GLN 81 291 291 GLN GLN A . n A 1 82 VAL 82 292 292 VAL VAL A . n A 1 83 GLN 83 293 293 GLN GLN A . n A 1 84 THR 84 294 294 THR THR A . n A 1 85 VAL 85 295 295 VAL VAL A . n A 1 86 ARG 86 296 296 ARG ARG A . n A 1 87 LYS 87 297 297 LYS LYS A . n A 1 88 ILE 88 298 298 ILE ILE A . n A 1 89 ALA 89 299 299 ALA ALA A . n A 1 90 GLU 90 300 300 GLU GLU A . n A 1 91 GLU 91 301 301 GLU GLU A . n A 1 92 GLU 92 302 302 GLU GLU A . n A 1 93 GLY 93 303 303 GLY GLY A . n A 1 94 VAL 94 304 304 VAL VAL A . n A 1 95 PRO 95 305 305 PRO PRO A . n A 1 96 ILE 96 306 306 ILE ILE A . n A 1 97 LEU 97 307 307 LEU LEU A . n A 1 98 GLN 98 308 308 GLN GLN A . n A 1 99 ARG 99 309 309 ARG ARG A . n A 1 100 ILE 100 310 310 ILE ILE A . n A 1 101 PRO 101 311 311 PRO PRO A . n A 1 102 LEU 102 312 312 LEU LEU A . n A 1 103 ALA 103 313 313 ALA ALA A . n A 1 104 ARG 104 314 314 ARG ARG A . n A 1 105 ALA 105 315 315 ALA ALA A . n A 1 106 LEU 106 316 316 LEU LEU A . n A 1 107 TYR 107 317 317 TYR TYR A . n A 1 108 TRP 108 318 318 TRP TRP A . n A 1 109 ASP 109 319 319 ASP ASP A . n A 1 110 ALA 110 320 320 ALA ALA A . n A 1 111 LEU 111 321 321 LEU LEU A . n A 1 112 VAL 112 322 322 VAL VAL A . n A 1 113 ASP 113 323 323 ASP ASP A . n A 1 114 HIS 114 324 324 HIS HIS A . n A 1 115 TYR 115 325 325 TYR TYR A . n A 1 116 ILE 116 326 326 ILE ILE A . n A 1 117 PRO 117 327 327 PRO PRO A . n A 1 118 ALA 118 328 328 ALA ALA A . n A 1 119 GLU 119 329 329 GLU GLU A . n A 1 120 GLN 120 330 330 GLN GLN A . n A 1 121 ILE 121 331 331 ILE ILE A . n A 1 122 GLU 122 332 332 GLU GLU A . n A 1 123 ALA 123 333 333 ALA ALA A . n A 1 124 THR 124 334 334 THR THR A . n A 1 125 ALA 125 335 335 ALA ALA A . n A 1 126 GLU 126 336 336 GLU GLU A . n A 1 127 VAL 127 337 337 VAL VAL A . n A 1 128 LEU 128 338 338 LEU LEU A . n A 1 129 ARG 129 339 339 ARG ARG A . n A 1 130 TRP 130 340 340 TRP TRP A . n A 1 131 LEU 131 341 341 LEU LEU A . n A 1 132 GLU 132 342 ? ? ? A . n A 1 133 ARG 133 343 ? ? ? A . n A 1 134 GLN 134 344 ? ? ? A . n A 1 135 ASN 135 345 ? ? ? A . n A 1 136 ILE 136 346 ? ? ? A . n A 1 137 GLU 137 347 ? ? ? A . n A 1 138 LYS 138 348 ? ? ? A . n A 1 139 GLN 139 349 ? ? ? A . n A 1 140 HIS 140 350 ? ? ? A . n A 1 141 SER 141 351 ? ? ? A . n A 1 142 GLU 142 352 ? ? ? A . n A 1 143 MSE 143 353 ? ? ? A . n A 1 144 LEU 144 354 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 1342 1342 CL CL A . C 3 HOH 1 2001 2001 HOH HOH A . C 3 HOH 2 2002 2002 HOH HOH A . C 3 HOH 3 2003 2003 HOH HOH A . C 3 HOH 4 2004 2004 HOH HOH A . C 3 HOH 5 2005 2005 HOH HOH A . C 3 HOH 6 2006 2006 HOH HOH A . C 3 HOH 7 2007 2007 HOH HOH A . C 3 HOH 8 2008 2008 HOH HOH A . C 3 HOH 9 2009 2009 HOH HOH A . C 3 HOH 10 2010 2010 HOH HOH A . C 3 HOH 11 2011 2011 HOH HOH A . C 3 HOH 12 2012 2012 HOH HOH A . C 3 HOH 13 2013 2013 HOH HOH A . C 3 HOH 14 2014 2014 HOH HOH A . C 3 HOH 15 2015 2015 HOH HOH A . C 3 HOH 16 2016 2016 HOH HOH A . C 3 HOH 17 2017 2017 HOH HOH A . C 3 HOH 18 2018 2018 HOH HOH A . C 3 HOH 19 2019 2019 HOH HOH A . C 3 HOH 20 2020 2020 HOH HOH A . C 3 HOH 21 2021 2021 HOH HOH A . C 3 HOH 22 2022 2022 HOH HOH A . C 3 HOH 23 2023 2023 HOH HOH A . C 3 HOH 24 2024 2024 HOH HOH A . C 3 HOH 25 2025 2025 HOH HOH A . C 3 HOH 26 2026 2026 HOH HOH A . C 3 HOH 27 2027 2027 HOH HOH A . C 3 HOH 28 2028 2028 HOH HOH A . C 3 HOH 29 2029 2029 HOH HOH A . C 3 HOH 30 2030 2030 HOH HOH A . C 3 HOH 31 2031 2031 HOH HOH A . C 3 HOH 32 2032 2032 HOH HOH A . C 3 HOH 33 2033 2033 HOH HOH A . C 3 HOH 34 2034 2034 HOH HOH A . C 3 HOH 35 2035 2035 HOH HOH A . C 3 HOH 36 2036 2036 HOH HOH A . C 3 HOH 37 2037 2037 HOH HOH A . C 3 HOH 38 2038 2038 HOH HOH A . C 3 HOH 39 2039 2039 HOH HOH A . C 3 HOH 40 2040 2040 HOH HOH A . C 3 HOH 41 2041 2041 HOH HOH A . C 3 HOH 42 2042 2042 HOH HOH A . C 3 HOH 43 2043 2043 HOH HOH A . C 3 HOH 44 2044 2044 HOH HOH A . C 3 HOH 45 2045 2045 HOH HOH A . C 3 HOH 46 2046 2046 HOH HOH A . C 3 HOH 47 2047 2047 HOH HOH A . C 3 HOH 48 2048 2048 HOH HOH A . C 3 HOH 49 2049 2049 HOH HOH A . C 3 HOH 50 2050 2050 HOH HOH A . C 3 HOH 51 2051 2051 HOH HOH A . C 3 HOH 52 2052 2052 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 18 A MSE 228 ? MET SELENOMETHIONINE 2 A MSE 40 A MSE 250 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1880 ? 1 MORE -10.8 ? 1 'SSA (A^2)' 14190 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 34.2500000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2041 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-11-04 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2019-05-08 5 'Structure model' 1 4 2019-07-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Experimental preparation' 6 4 'Structure model' Other 7 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_PDB_rev 2 4 'Structure model' database_PDB_rev_record 3 4 'Structure model' exptl_crystal_grow 4 4 'Structure model' pdbx_database_proc 5 4 'Structure model' pdbx_database_status 6 4 'Structure model' struct_conn 7 5 'Structure model' diffrn_source # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.method' 2 4 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 MOSFLM 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 Auto-Rickshaw phasing . ? 4 # _pdbx_entry_details.entry_id 2V5G _pdbx_entry_details.compound_details 'ENGINEERED RESIDUE IN CHAIN A, ASN 263 TO ALA' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 266 ? ? -125.58 -53.17 2 1 ASP A 289 ? ? 57.51 -132.24 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLY _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 248 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASN _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 249 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 68.38 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ILE 211 ? A ILE 1 2 1 Y 1 A LYS 212 ? A LYS 2 3 1 Y 1 A GLU 213 ? A GLU 3 4 1 Y 1 A LEU 214 ? A LEU 4 5 1 Y 1 A LYS 215 ? A LYS 5 6 1 Y 1 A MSE 216 ? A MSE 6 7 1 Y 1 A SER 217 ? A SER 7 8 1 Y 1 A LYS 218 ? A LYS 8 9 1 Y 1 A ASP 219 ? A ASP 9 10 1 Y 1 A GLU 220 ? A GLU 10 11 1 Y 1 A ILE 221 ? A ILE 11 12 1 Y 1 A GLU 342 ? A GLU 132 13 1 Y 1 A ARG 343 ? A ARG 133 14 1 Y 1 A GLN 344 ? A GLN 134 15 1 Y 1 A ASN 345 ? A ASN 135 16 1 Y 1 A ILE 346 ? A ILE 136 17 1 Y 1 A GLU 347 ? A GLU 137 18 1 Y 1 A LYS 348 ? A LYS 138 19 1 Y 1 A GLN 349 ? A GLN 139 20 1 Y 1 A HIS 350 ? A HIS 140 21 1 Y 1 A SER 351 ? A SER 141 22 1 Y 1 A GLU 352 ? A GLU 142 23 1 Y 1 A MSE 353 ? A MSE 143 24 1 Y 1 A LEU 354 ? A LEU 144 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH #