data_2V72 # _entry.id 2V72 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2V72 PDBE EBI-33278 WWPDB D_1290033278 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2V73 _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'THE STRUCTURE OF THE FAMILY 40 CBM FROM C. PERFRINGENS NANJ IN COMPLEX WITH A SIALIC ACID CONTAINING MOLECULE' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2V72 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-07-25 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Boraston, A.B.' 1 'Ficko-Blean, E.' 2 'Healey, M.' 3 # _citation.id primary _citation.title 'Carbohydrate Recognition by a Large Sialidase Toxin from Clostridium Perfringens.' _citation.journal_abbrev Biochemistry _citation.journal_volume 46 _citation.page_first 11352 _citation.page_last ? _citation.year 2007 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17850114 _citation.pdbx_database_id_DOI 10.1021/BI701317G # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Boraston, A.B.' 1 ? primary 'Ficko-Blean, E.' 2 ? primary 'Healey, M.' 3 ? # _cell.entry_id 2V72 _cell.length_a 42.265 _cell.length_b 45.860 _cell.length_c 69.003 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V72 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man EXO-ALPHA-SIALIDASE 15135.670 1 ? ? 'CARBOHYDRATE-BINDING MODULE, RESIDUES 42-180' ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 non-polymer man beta-D-galactopyranose 180.156 1 ? ? ? ? 4 water nat water 18.015 42 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name CBM32 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GMASAIIETAIPQSEMTASATSEEGQDPASSAIDGNINTMWHTKWNGSDALPQSLSVNLGKARKVSSIAITPRTSGNNGF ITKYEIHAINNGVETLVAEGTWEENNLVKTVTFDSPIDAEEIKITAIQGVGGFASIAELNVYE ; _entity_poly.pdbx_seq_one_letter_code_can ;GMASAIIETAIPQSEMTASATSEEGQDPASSAIDGNINTMWHTKWNGSDALPQSLSVNLGKARKVSSIAITPRTSGNNGF ITKYEIHAINNGVETLVAEGTWEENNLVKTVTFDSPIDAEEIKITAIQGVGGFASIAELNVYE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MET n 1 3 ALA n 1 4 SER n 1 5 ALA n 1 6 ILE n 1 7 ILE n 1 8 GLU n 1 9 THR n 1 10 ALA n 1 11 ILE n 1 12 PRO n 1 13 GLN n 1 14 SER n 1 15 GLU n 1 16 MET n 1 17 THR n 1 18 ALA n 1 19 SER n 1 20 ALA n 1 21 THR n 1 22 SER n 1 23 GLU n 1 24 GLU n 1 25 GLY n 1 26 GLN n 1 27 ASP n 1 28 PRO n 1 29 ALA n 1 30 SER n 1 31 SER n 1 32 ALA n 1 33 ILE n 1 34 ASP n 1 35 GLY n 1 36 ASN n 1 37 ILE n 1 38 ASN n 1 39 THR n 1 40 MET n 1 41 TRP n 1 42 HIS n 1 43 THR n 1 44 LYS n 1 45 TRP n 1 46 ASN n 1 47 GLY n 1 48 SER n 1 49 ASP n 1 50 ALA n 1 51 LEU n 1 52 PRO n 1 53 GLN n 1 54 SER n 1 55 LEU n 1 56 SER n 1 57 VAL n 1 58 ASN n 1 59 LEU n 1 60 GLY n 1 61 LYS n 1 62 ALA n 1 63 ARG n 1 64 LYS n 1 65 VAL n 1 66 SER n 1 67 SER n 1 68 ILE n 1 69 ALA n 1 70 ILE n 1 71 THR n 1 72 PRO n 1 73 ARG n 1 74 THR n 1 75 SER n 1 76 GLY n 1 77 ASN n 1 78 ASN n 1 79 GLY n 1 80 PHE n 1 81 ILE n 1 82 THR n 1 83 LYS n 1 84 TYR n 1 85 GLU n 1 86 ILE n 1 87 HIS n 1 88 ALA n 1 89 ILE n 1 90 ASN n 1 91 ASN n 1 92 GLY n 1 93 VAL n 1 94 GLU n 1 95 THR n 1 96 LEU n 1 97 VAL n 1 98 ALA n 1 99 GLU n 1 100 GLY n 1 101 THR n 1 102 TRP n 1 103 GLU n 1 104 GLU n 1 105 ASN n 1 106 ASN n 1 107 LEU n 1 108 VAL n 1 109 LYS n 1 110 THR n 1 111 VAL n 1 112 THR n 1 113 PHE n 1 114 ASP n 1 115 SER n 1 116 PRO n 1 117 ILE n 1 118 ASP n 1 119 ALA n 1 120 GLU n 1 121 GLU n 1 122 ILE n 1 123 LYS n 1 124 ILE n 1 125 THR n 1 126 ALA n 1 127 ILE n 1 128 GLN n 1 129 GLY n 1 130 VAL n 1 131 GLY n 1 132 GLY n 1 133 PHE n 1 134 ALA n 1 135 SER n 1 136 ILE n 1 137 ALA n 1 138 GLU n 1 139 LEU n 1 140 ASN n 1 141 VAL n 1 142 TYR n 1 143 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'CLOSTRIDIUM PERFRINGENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1502 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 13124 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PET 28A' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2V72 1 ? ? 2V72 ? 2 UNP Q8XMY5_CLOPE 1 ? ? Q8XMY5 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2V72 A 1 ? 4 ? 2V72 -4 ? -1 ? -4 -1 2 2 2V72 A 5 ? 143 ? Q8XMY5 42 ? 180 ? 0 138 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2V72 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.22 _exptl_crystal.density_percent_sol 44.10 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 113 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2V72 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.00 _reflns.d_resolution_high 2.25 _reflns.number_obs 6309 _reflns.number_all ? _reflns.percent_possible_obs 93.6 _reflns.pdbx_Rmerge_I_obs 0.09 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.20 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.34 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.25 _reflns_shell.d_res_low 2.31 _reflns_shell.percent_possible_all 98.6 _reflns_shell.Rmerge_I_obs 0.26 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.10 _reflns_shell.pdbx_redundancy 4.21 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2V72 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 5668 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.25 _refine.ls_percent_reflns_obs 93.6 _refine.ls_R_factor_obs 0.258 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.251 _refine.ls_R_factor_R_free 0.325 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.100 _refine.ls_number_reflns_R_free 636 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.923 _refine.correlation_coeff_Fo_to_Fc_free 0.869 _refine.B_iso_mean 49.76 _refine.aniso_B[1][1] 2.62000 _refine.aniso_B[2][2] -2.29000 _refine.aniso_B[3][3] -0.34000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.532 _refine.pdbx_overall_ESU_R_Free 0.338 _refine.overall_SU_ML 0.243 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 9.813 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1022 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 42 _refine_hist.number_atoms_total 1077 _refine_hist.d_res_high 2.25 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.022 ? 1051 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.253 1.946 ? 1432 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.947 5.000 ? 136 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 47.857 26.889 ? 45 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.242 15.000 ? 168 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.018 15.000 ? 2 'X-RAY DIFFRACTION' ? r_chiral_restr 0.091 0.200 ? 170 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 785 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.192 0.200 ? 479 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.297 0.200 ? 710 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.139 0.200 ? 61 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.153 0.200 ? 27 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.229 0.200 ? 3 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.408 1.500 ? 700 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.698 2.000 ? 1092 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 0.904 3.000 ? 404 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 1.400 4.500 ? 340 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.25 _refine_ls_shell.d_res_low 2.31 _refine_ls_shell.number_reflns_R_work 422 _refine_ls_shell.R_factor_R_work 0.3110 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3800 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 57 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2V72 _struct.title 'The structure of the family 32 CBM from C. perfringens NanJ in complex with galactose' _struct.pdbx_descriptor EXO-ALPHA-SIALIDASE _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2V72 _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'GALACTOSE, BACTERIAL PATHOGEN, CARBOHYDRATE-BINDING MODULE, SUGAR-BINDING PROTEIN, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 12 ? MET A 16 ? PRO A 7 MET A 11 5 ? 5 HELX_P HELX_P2 2 PRO A 28 ? ILE A 33 ? PRO A 23 ILE A 28 5 ? 6 HELX_P HELX_P3 3 GLY A 131 ? PHE A 133 ? GLY A 126 PHE A 128 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A SER 31 O ? ? ? 1_555 B CA . CA ? ? A SER 26 A CA 1139 1_555 ? ? ? ? ? ? ? 2.308 ? ? metalc2 metalc ? ? A ASP 34 OD1 ? ? ? 1_555 B CA . CA ? ? A ASP 29 A CA 1139 1_555 ? ? ? ? ? ? ? 2.311 ? ? metalc3 metalc ? ? A ASN 36 O ? ? ? 1_555 B CA . CA ? ? A ASN 31 A CA 1139 1_555 ? ? ? ? ? ? ? 2.293 ? ? metalc4 metalc ? ? A THR 39 O ? ? ? 1_555 B CA . CA ? ? A THR 34 A CA 1139 1_555 ? ? ? ? ? ? ? 2.353 ? ? metalc5 metalc ? ? A THR 39 OG1 ? ? ? 1_555 B CA . CA ? ? A THR 34 A CA 1139 1_555 ? ? ? ? ? ? ? 2.566 ? ? metalc6 metalc ? ? A ALA 137 O ? ? ? 1_555 B CA . CA ? ? A ALA 132 A CA 1139 1_555 ? ? ? ? ? ? ? 2.320 ? ? metalc7 metalc ? ? A GLU 138 OE2 ? ? ? 1_555 B CA . CA ? ? A GLU 133 A CA 1139 1_555 ? ? ? ? ? ? ? 2.409 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LEU 51 A . ? LEU 46 A PRO 52 A ? PRO 47 A 1 -1.08 2 ASN 91 A . ? ASN 86 A GLY 92 A ? GLY 87 A 1 -22.10 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? AB ? 3 ? AC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 THR A 17 ? ALA A 20 ? THR A 12 ALA A 15 AA 2 GLN A 53 ? THR A 71 ? GLN A 48 THR A 66 AA 3 LYS A 109 ? GLY A 129 ? LYS A 104 GLY A 124 AA 4 ILE A 81 ? ASN A 90 ? ILE A 76 ASN A 85 AA 5 VAL A 93 ? THR A 101 ? VAL A 88 THR A 96 AB 1 THR A 17 ? ALA A 20 ? THR A 12 ALA A 15 AB 2 GLN A 53 ? THR A 71 ? GLN A 48 THR A 66 AB 3 GLU A 138 ? TYR A 142 ? GLU A 133 TYR A 137 AC 1 TRP A 41 ? HIS A 42 ? TRP A 36 HIS A 37 AC 2 SER A 135 ? ILE A 136 ? SER A 130 ILE A 131 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N SER A 19 ? N SER A 14 O SER A 56 ? O SER A 51 AA 2 3 N ILE A 70 ? N ILE A 65 O LYS A 109 ? O LYS A 104 AA 3 4 O GLN A 128 ? O GLN A 123 N THR A 82 ? N THR A 77 AA 4 5 N ASN A 90 ? N ASN A 85 O VAL A 93 ? O VAL A 88 AB 1 2 N SER A 19 ? N SER A 14 O SER A 56 ? O SER A 51 AB 2 3 N THR A 71 ? N THR A 66 O GLU A 138 ? O GLU A 133 AC 1 2 N TRP A 41 ? N TRP A 36 O ILE A 136 ? O ILE A 131 # _database_PDB_matrix.entry_id 2V72 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2V72 _atom_sites.fract_transf_matrix[1][1] 0.023660 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021805 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014492 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -4 ? ? ? A . n A 1 2 MET 2 -3 ? ? ? A . n A 1 3 ALA 3 -2 ? ? ? A . n A 1 4 SER 4 -1 ? ? ? A . n A 1 5 ALA 5 0 ? ? ? A . n A 1 6 ILE 6 1 ? ? ? A . n A 1 7 ILE 7 2 2 ILE ILE A . n A 1 8 GLU 8 3 3 GLU GLU A . n A 1 9 THR 9 4 4 THR THR A . n A 1 10 ALA 10 5 5 ALA ALA A . n A 1 11 ILE 11 6 6 ILE ILE A . n A 1 12 PRO 12 7 7 PRO PRO A . n A 1 13 GLN 13 8 8 GLN GLN A . n A 1 14 SER 14 9 9 SER SER A . n A 1 15 GLU 15 10 10 GLU GLU A . n A 1 16 MET 16 11 11 MET MET A . n A 1 17 THR 17 12 12 THR THR A . n A 1 18 ALA 18 13 13 ALA ALA A . n A 1 19 SER 19 14 14 SER SER A . n A 1 20 ALA 20 15 15 ALA ALA A . n A 1 21 THR 21 16 16 THR THR A . n A 1 22 SER 22 17 17 SER SER A . n A 1 23 GLU 23 18 18 GLU GLU A . n A 1 24 GLU 24 19 19 GLU GLU A . n A 1 25 GLY 25 20 20 GLY GLY A . n A 1 26 GLN 26 21 21 GLN GLN A . n A 1 27 ASP 27 22 22 ASP ASP A . n A 1 28 PRO 28 23 23 PRO PRO A . n A 1 29 ALA 29 24 24 ALA ALA A . n A 1 30 SER 30 25 25 SER SER A . n A 1 31 SER 31 26 26 SER SER A . n A 1 32 ALA 32 27 27 ALA ALA A . n A 1 33 ILE 33 28 28 ILE ILE A . n A 1 34 ASP 34 29 29 ASP ASP A . n A 1 35 GLY 35 30 30 GLY GLY A . n A 1 36 ASN 36 31 31 ASN ASN A . n A 1 37 ILE 37 32 32 ILE ILE A . n A 1 38 ASN 38 33 33 ASN ASN A . n A 1 39 THR 39 34 34 THR THR A . n A 1 40 MET 40 35 35 MET MET A . n A 1 41 TRP 41 36 36 TRP TRP A . n A 1 42 HIS 42 37 37 HIS HIS A . n A 1 43 THR 43 38 38 THR THR A . n A 1 44 LYS 44 39 39 LYS LYS A . n A 1 45 TRP 45 40 40 TRP TRP A . n A 1 46 ASN 46 41 41 ASN ASN A . n A 1 47 GLY 47 42 42 GLY GLY A . n A 1 48 SER 48 43 43 SER SER A . n A 1 49 ASP 49 44 44 ASP ASP A . n A 1 50 ALA 50 45 45 ALA ALA A . n A 1 51 LEU 51 46 46 LEU LEU A . n A 1 52 PRO 52 47 47 PRO PRO A . n A 1 53 GLN 53 48 48 GLN GLN A . n A 1 54 SER 54 49 49 SER SER A . n A 1 55 LEU 55 50 50 LEU LEU A . n A 1 56 SER 56 51 51 SER SER A . n A 1 57 VAL 57 52 52 VAL VAL A . n A 1 58 ASN 58 53 53 ASN ASN A . n A 1 59 LEU 59 54 54 LEU LEU A . n A 1 60 GLY 60 55 55 GLY GLY A . n A 1 61 LYS 61 56 56 LYS LYS A . n A 1 62 ALA 62 57 57 ALA ALA A . n A 1 63 ARG 63 58 58 ARG ARG A . n A 1 64 LYS 64 59 59 LYS LYS A . n A 1 65 VAL 65 60 60 VAL VAL A . n A 1 66 SER 66 61 61 SER SER A . n A 1 67 SER 67 62 62 SER SER A . n A 1 68 ILE 68 63 63 ILE ILE A . n A 1 69 ALA 69 64 64 ALA ALA A . n A 1 70 ILE 70 65 65 ILE ILE A . n A 1 71 THR 71 66 66 THR THR A . n A 1 72 PRO 72 67 67 PRO PRO A . n A 1 73 ARG 73 68 68 ARG ARG A . n A 1 74 THR 74 69 69 THR THR A . n A 1 75 SER 75 70 70 SER SER A . n A 1 76 GLY 76 71 71 GLY GLY A . n A 1 77 ASN 77 72 72 ASN ASN A . n A 1 78 ASN 78 73 73 ASN ASN A . n A 1 79 GLY 79 74 74 GLY GLY A . n A 1 80 PHE 80 75 75 PHE PHE A . n A 1 81 ILE 81 76 76 ILE ILE A . n A 1 82 THR 82 77 77 THR THR A . n A 1 83 LYS 83 78 78 LYS LYS A . n A 1 84 TYR 84 79 79 TYR TYR A . n A 1 85 GLU 85 80 80 GLU GLU A . n A 1 86 ILE 86 81 81 ILE ILE A . n A 1 87 HIS 87 82 82 HIS HIS A . n A 1 88 ALA 88 83 83 ALA ALA A . n A 1 89 ILE 89 84 84 ILE ILE A . n A 1 90 ASN 90 85 85 ASN ASN A . n A 1 91 ASN 91 86 86 ASN ASN A . n A 1 92 GLY 92 87 87 GLY GLY A . n A 1 93 VAL 93 88 88 VAL VAL A . n A 1 94 GLU 94 89 89 GLU GLU A . n A 1 95 THR 95 90 90 THR THR A . n A 1 96 LEU 96 91 91 LEU LEU A . n A 1 97 VAL 97 92 92 VAL VAL A . n A 1 98 ALA 98 93 93 ALA ALA A . n A 1 99 GLU 99 94 94 GLU GLU A . n A 1 100 GLY 100 95 95 GLY GLY A . n A 1 101 THR 101 96 96 THR THR A . n A 1 102 TRP 102 97 97 TRP TRP A . n A 1 103 GLU 103 98 98 GLU GLU A . n A 1 104 GLU 104 99 99 GLU GLU A . n A 1 105 ASN 105 100 100 ASN ASN A . n A 1 106 ASN 106 101 101 ASN ASN A . n A 1 107 LEU 107 102 102 LEU LEU A . n A 1 108 VAL 108 103 103 VAL VAL A . n A 1 109 LYS 109 104 104 LYS LYS A . n A 1 110 THR 110 105 105 THR THR A . n A 1 111 VAL 111 106 106 VAL VAL A . n A 1 112 THR 112 107 107 THR THR A . n A 1 113 PHE 113 108 108 PHE PHE A . n A 1 114 ASP 114 109 109 ASP ASP A . n A 1 115 SER 115 110 110 SER SER A . n A 1 116 PRO 116 111 111 PRO PRO A . n A 1 117 ILE 117 112 112 ILE ILE A . n A 1 118 ASP 118 113 113 ASP ASP A . n A 1 119 ALA 119 114 114 ALA ALA A . n A 1 120 GLU 120 115 115 GLU GLU A . n A 1 121 GLU 121 116 116 GLU GLU A . n A 1 122 ILE 122 117 117 ILE ILE A . n A 1 123 LYS 123 118 118 LYS LYS A . n A 1 124 ILE 124 119 119 ILE ILE A . n A 1 125 THR 125 120 120 THR THR A . n A 1 126 ALA 126 121 121 ALA ALA A . n A 1 127 ILE 127 122 122 ILE ILE A . n A 1 128 GLN 128 123 123 GLN GLN A . n A 1 129 GLY 129 124 124 GLY GLY A . n A 1 130 VAL 130 125 125 VAL VAL A . n A 1 131 GLY 131 126 126 GLY GLY A . n A 1 132 GLY 132 127 127 GLY GLY A . n A 1 133 PHE 133 128 128 PHE PHE A . n A 1 134 ALA 134 129 129 ALA ALA A . n A 1 135 SER 135 130 130 SER SER A . n A 1 136 ILE 136 131 131 ILE ILE A . n A 1 137 ALA 137 132 132 ALA ALA A . n A 1 138 GLU 138 133 133 GLU GLU A . n A 1 139 LEU 139 134 134 LEU LEU A . n A 1 140 ASN 140 135 135 ASN ASN A . n A 1 141 VAL 141 136 136 VAL VAL A . n A 1 142 TYR 142 137 137 TYR TYR A . n A 1 143 GLU 143 138 138 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 1139 1139 CA CA A . C 3 GAL 1 1140 1140 GAL GAL A . D 4 HOH 1 2001 2001 HOH HOH A . D 4 HOH 2 2002 2002 HOH HOH A . D 4 HOH 3 2003 2003 HOH HOH A . D 4 HOH 4 2004 2004 HOH HOH A . D 4 HOH 5 2005 2005 HOH HOH A . D 4 HOH 6 2006 2006 HOH HOH A . D 4 HOH 7 2007 2007 HOH HOH A . D 4 HOH 8 2008 2008 HOH HOH A . D 4 HOH 9 2009 2009 HOH HOH A . D 4 HOH 10 2010 2010 HOH HOH A . D 4 HOH 11 2011 2011 HOH HOH A . D 4 HOH 12 2012 2012 HOH HOH A . D 4 HOH 13 2013 2013 HOH HOH A . D 4 HOH 14 2014 2014 HOH HOH A . D 4 HOH 15 2015 2015 HOH HOH A . D 4 HOH 16 2016 2016 HOH HOH A . D 4 HOH 17 2017 2017 HOH HOH A . D 4 HOH 18 2018 2018 HOH HOH A . D 4 HOH 19 2019 2019 HOH HOH A . D 4 HOH 20 2020 2020 HOH HOH A . D 4 HOH 21 2021 2021 HOH HOH A . D 4 HOH 22 2022 2022 HOH HOH A . D 4 HOH 23 2023 2023 HOH HOH A . D 4 HOH 24 2024 2024 HOH HOH A . D 4 HOH 25 2025 2025 HOH HOH A . D 4 HOH 26 2026 2026 HOH HOH A . D 4 HOH 27 2027 2027 HOH HOH A . D 4 HOH 28 2028 2028 HOH HOH A . D 4 HOH 29 2029 2029 HOH HOH A . D 4 HOH 30 2030 2030 HOH HOH A . D 4 HOH 31 2031 2031 HOH HOH A . D 4 HOH 32 2032 2032 HOH HOH A . D 4 HOH 33 2033 2033 HOH HOH A . D 4 HOH 34 2034 2034 HOH HOH A . D 4 HOH 35 2035 2035 HOH HOH A . D 4 HOH 36 2036 2036 HOH HOH A . D 4 HOH 37 2037 2037 HOH HOH A . D 4 HOH 38 2038 2038 HOH HOH A . D 4 HOH 39 2039 2039 HOH HOH A . D 4 HOH 40 2040 2040 HOH HOH A . D 4 HOH 41 2041 2041 HOH HOH A . D 4 HOH 42 2042 2042 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A SER 31 ? A SER 26 ? 1_555 CA ? B CA . ? A CA 1139 ? 1_555 OD1 ? A ASP 34 ? A ASP 29 ? 1_555 80.0 ? 2 O ? A SER 31 ? A SER 26 ? 1_555 CA ? B CA . ? A CA 1139 ? 1_555 O ? A ASN 36 ? A ASN 31 ? 1_555 166.4 ? 3 OD1 ? A ASP 34 ? A ASP 29 ? 1_555 CA ? B CA . ? A CA 1139 ? 1_555 O ? A ASN 36 ? A ASN 31 ? 1_555 97.2 ? 4 O ? A SER 31 ? A SER 26 ? 1_555 CA ? B CA . ? A CA 1139 ? 1_555 O ? A THR 39 ? A THR 34 ? 1_555 86.0 ? 5 OD1 ? A ASP 34 ? A ASP 29 ? 1_555 CA ? B CA . ? A CA 1139 ? 1_555 O ? A THR 39 ? A THR 34 ? 1_555 138.7 ? 6 O ? A ASN 36 ? A ASN 31 ? 1_555 CA ? B CA . ? A CA 1139 ? 1_555 O ? A THR 39 ? A THR 34 ? 1_555 87.4 ? 7 O ? A SER 31 ? A SER 26 ? 1_555 CA ? B CA . ? A CA 1139 ? 1_555 OG1 ? A THR 39 ? A THR 34 ? 1_555 86.1 ? 8 OD1 ? A ASP 34 ? A ASP 29 ? 1_555 CA ? B CA . ? A CA 1139 ? 1_555 OG1 ? A THR 39 ? A THR 34 ? 1_555 71.5 ? 9 O ? A ASN 36 ? A ASN 31 ? 1_555 CA ? B CA . ? A CA 1139 ? 1_555 OG1 ? A THR 39 ? A THR 34 ? 1_555 80.4 ? 10 O ? A THR 39 ? A THR 34 ? 1_555 CA ? B CA . ? A CA 1139 ? 1_555 OG1 ? A THR 39 ? A THR 34 ? 1_555 68.9 ? 11 O ? A SER 31 ? A SER 26 ? 1_555 CA ? B CA . ? A CA 1139 ? 1_555 O ? A ALA 137 ? A ALA 132 ? 1_555 85.8 ? 12 OD1 ? A ASP 34 ? A ASP 29 ? 1_555 CA ? B CA . ? A CA 1139 ? 1_555 O ? A ALA 137 ? A ALA 132 ? 1_555 141.4 ? 13 O ? A ASN 36 ? A ASN 31 ? 1_555 CA ? B CA . ? A CA 1139 ? 1_555 O ? A ALA 137 ? A ALA 132 ? 1_555 104.0 ? 14 O ? A THR 39 ? A THR 34 ? 1_555 CA ? B CA . ? A CA 1139 ? 1_555 O ? A ALA 137 ? A ALA 132 ? 1_555 74.8 ? 15 OG1 ? A THR 39 ? A THR 34 ? 1_555 CA ? B CA . ? A CA 1139 ? 1_555 O ? A ALA 137 ? A ALA 132 ? 1_555 143.2 ? 16 O ? A SER 31 ? A SER 26 ? 1_555 CA ? B CA . ? A CA 1139 ? 1_555 OE2 ? A GLU 138 ? A GLU 133 ? 1_555 104.2 ? 17 OD1 ? A ASP 34 ? A ASP 29 ? 1_555 CA ? B CA . ? A CA 1139 ? 1_555 OE2 ? A GLU 138 ? A GLU 133 ? 1_555 71.7 ? 18 O ? A ASN 36 ? A ASN 31 ? 1_555 CA ? B CA . ? A CA 1139 ? 1_555 OE2 ? A GLU 138 ? A GLU 133 ? 1_555 87.3 ? 19 O ? A THR 39 ? A THR 34 ? 1_555 CA ? B CA . ? A CA 1139 ? 1_555 OE2 ? A GLU 138 ? A GLU 133 ? 1_555 149.6 ? 20 OG1 ? A THR 39 ? A THR 34 ? 1_555 CA ? B CA . ? A CA 1139 ? 1_555 OE2 ? A GLU 138 ? A GLU 133 ? 1_555 139.2 ? 21 O ? A ALA 137 ? A ALA 132 ? 1_555 CA ? B CA . ? A CA 1139 ? 1_555 OE2 ? A GLU 138 ? A GLU 133 ? 1_555 77.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-21 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' entity 3 4 'Structure model' pdbx_chem_comp_identifier 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_entity_nonpoly 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site 9 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_entity.pdbx_description' 4 4 'Structure model' '_pdbx_database_status.status_code_sf' 5 4 'Structure model' '_pdbx_entity_nonpoly.name' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.value' 17 4 'Structure model' '_struct_conn.pdbx_dist_value' 18 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 d*TREK 'data reduction' . ? 2 d*TREK 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. ; # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 22 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -118.67 _pdbx_validate_torsion.psi 69.60 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ILE 2 ? CB ? A ILE 7 CB 2 1 Y 1 A ILE 2 ? CG1 ? A ILE 7 CG1 3 1 Y 1 A ILE 2 ? CG2 ? A ILE 7 CG2 4 1 Y 1 A ILE 2 ? CD1 ? A ILE 7 CD1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -4 ? A GLY 1 2 1 Y 1 A MET -3 ? A MET 2 3 1 Y 1 A ALA -2 ? A ALA 3 4 1 Y 1 A SER -1 ? A SER 4 5 1 Y 1 A ALA 0 ? A ALA 5 6 1 Y 1 A ILE 1 ? A ILE 6 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 beta-D-galactopyranose GAL 4 water HOH #