data_2V7S # _entry.id 2V7S # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2V7S PDBE EBI-33303 WWPDB D_1290033303 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2V7S _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-08-01 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Grana, M.' 1 'Miras, I.' 2 'Haouz, A.' 3 'Winter, N.' 4 'Buschiazzo, A.' 5 'Bellinzoni, M.' 6 'Alzari, P.M.' 7 # _citation.id primary _citation.title 'Crystal Structure of Mycobacterium Tuberculosis Lppa, a Lipoprotein Confined to Pathogenic Mycobacteria.' _citation.journal_abbrev Proteins _citation.journal_volume 78 _citation.page_first 769 _citation.page_last ? _citation.year 2010 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19899167 _citation.pdbx_database_id_DOI 10.1002/PROT.22603 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Grana, M.' 1 primary 'Bellinzoni, M.' 2 primary 'Bellalou, J.' 3 primary 'Haouz, A.' 4 primary 'Miras, I.' 5 primary 'Buschiazzo, A.' 6 primary 'Winter, N.' 7 primary 'Alzari, P.M.' 8 # _cell.entry_id 2V7S _cell.length_a 105.000 _cell.length_b 49.820 _cell.length_c 42.210 _cell.angle_alpha 90.00 _cell.angle_beta 99.43 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V7S _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PROBABLE CONSERVED LIPOPROTEIN LPPA' 24337.549 1 ? ? 'RESIDUES 34-219' ? 2 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 3 water nat water 18.015 62 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'LPPA, LIPOPROTEIN, PUTATIVE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)SYYHHHHHHLESTSLYKKAGSENLYFQGT(MSE)DHNPDTSRRLTGEQKIQLIDS(MSE)RNKGSYEAARERLTA TARIIADRVSAAIPGQTWKFDDDPNIQQSDRNGALCDKLTADIARRPIANSV(MSE)FGATFSAEDFKIAANIVREEAAK YGATTESSLFNESAKRDYDVQGNGYEFRLLQIKFATLNITGDCFLLQKVLDLPAGQLPPEPPIWPTTSTPH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSYYHHHHHHLESTSLYKKAGSENLYFQGTMDHNPDTSRRLTGEQKIQLIDSMRNKGSYEAARERLTATARIIADRVSAA IPGQTWKFDDDPNIQQSDRNGALCDKLTADIARRPIANSVMFGATFSAEDFKIAANIVREEAAKYGATTESSLFNESAKR DYDVQGNGYEFRLLQIKFATLNITGDCFLLQKVLDLPAGQLPPEPPIWPTTSTPH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 SER n 1 3 TYR n 1 4 TYR n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 LEU n 1 12 GLU n 1 13 SER n 1 14 THR n 1 15 SER n 1 16 LEU n 1 17 TYR n 1 18 LYS n 1 19 LYS n 1 20 ALA n 1 21 GLY n 1 22 SER n 1 23 GLU n 1 24 ASN n 1 25 LEU n 1 26 TYR n 1 27 PHE n 1 28 GLN n 1 29 GLY n 1 30 THR n 1 31 MSE n 1 32 ASP n 1 33 HIS n 1 34 ASN n 1 35 PRO n 1 36 ASP n 1 37 THR n 1 38 SER n 1 39 ARG n 1 40 ARG n 1 41 LEU n 1 42 THR n 1 43 GLY n 1 44 GLU n 1 45 GLN n 1 46 LYS n 1 47 ILE n 1 48 GLN n 1 49 LEU n 1 50 ILE n 1 51 ASP n 1 52 SER n 1 53 MSE n 1 54 ARG n 1 55 ASN n 1 56 LYS n 1 57 GLY n 1 58 SER n 1 59 TYR n 1 60 GLU n 1 61 ALA n 1 62 ALA n 1 63 ARG n 1 64 GLU n 1 65 ARG n 1 66 LEU n 1 67 THR n 1 68 ALA n 1 69 THR n 1 70 ALA n 1 71 ARG n 1 72 ILE n 1 73 ILE n 1 74 ALA n 1 75 ASP n 1 76 ARG n 1 77 VAL n 1 78 SER n 1 79 ALA n 1 80 ALA n 1 81 ILE n 1 82 PRO n 1 83 GLY n 1 84 GLN n 1 85 THR n 1 86 TRP n 1 87 LYS n 1 88 PHE n 1 89 ASP n 1 90 ASP n 1 91 ASP n 1 92 PRO n 1 93 ASN n 1 94 ILE n 1 95 GLN n 1 96 GLN n 1 97 SER n 1 98 ASP n 1 99 ARG n 1 100 ASN n 1 101 GLY n 1 102 ALA n 1 103 LEU n 1 104 CYS n 1 105 ASP n 1 106 LYS n 1 107 LEU n 1 108 THR n 1 109 ALA n 1 110 ASP n 1 111 ILE n 1 112 ALA n 1 113 ARG n 1 114 ARG n 1 115 PRO n 1 116 ILE n 1 117 ALA n 1 118 ASN n 1 119 SER n 1 120 VAL n 1 121 MSE n 1 122 PHE n 1 123 GLY n 1 124 ALA n 1 125 THR n 1 126 PHE n 1 127 SER n 1 128 ALA n 1 129 GLU n 1 130 ASP n 1 131 PHE n 1 132 LYS n 1 133 ILE n 1 134 ALA n 1 135 ALA n 1 136 ASN n 1 137 ILE n 1 138 VAL n 1 139 ARG n 1 140 GLU n 1 141 GLU n 1 142 ALA n 1 143 ALA n 1 144 LYS n 1 145 TYR n 1 146 GLY n 1 147 ALA n 1 148 THR n 1 149 THR n 1 150 GLU n 1 151 SER n 1 152 SER n 1 153 LEU n 1 154 PHE n 1 155 ASN n 1 156 GLU n 1 157 SER n 1 158 ALA n 1 159 LYS n 1 160 ARG n 1 161 ASP n 1 162 TYR n 1 163 ASP n 1 164 VAL n 1 165 GLN n 1 166 GLY n 1 167 ASN n 1 168 GLY n 1 169 TYR n 1 170 GLU n 1 171 PHE n 1 172 ARG n 1 173 LEU n 1 174 LEU n 1 175 GLN n 1 176 ILE n 1 177 LYS n 1 178 PHE n 1 179 ALA n 1 180 THR n 1 181 LEU n 1 182 ASN n 1 183 ILE n 1 184 THR n 1 185 GLY n 1 186 ASP n 1 187 CYS n 1 188 PHE n 1 189 LEU n 1 190 LEU n 1 191 GLN n 1 192 LYS n 1 193 VAL n 1 194 LEU n 1 195 ASP n 1 196 LEU n 1 197 PRO n 1 198 ALA n 1 199 GLY n 1 200 GLN n 1 201 LEU n 1 202 PRO n 1 203 PRO n 1 204 GLU n 1 205 PRO n 1 206 PRO n 1 207 ILE n 1 208 TRP n 1 209 PRO n 1 210 THR n 1 211 THR n 1 212 SER n 1 213 THR n 1 214 PRO n 1 215 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain H37RV _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'MYCOBACTERIUM TUBERCULOSIS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83332 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector PDEST17 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2V7S 1 ? ? 2V7S ? 2 UNP P95010_MYCTU 1 ? ? P95010 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2V7S A 1 ? 29 ? 2V7S 5 ? 33 ? 5 33 2 2 2V7S A 30 ? 215 ? P95010 34 ? 219 ? 34 219 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2V7S _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.81 _exptl_crystal.density_percent_sol 56 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 9 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '20% PEG-3350, BICINE 0.1 M, PH 9, 50 MM MGCL2' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2006-03-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9790 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 0.9790 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2V7S _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 45.00 _reflns.d_resolution_high 1.96 _reflns.number_obs 15229 _reflns.number_all ? _reflns.percent_possible_obs 97.8 _reflns.pdbx_Rmerge_I_obs 0.11 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.60 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.9 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.96 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 85.6 _reflns_shell.Rmerge_I_obs 0.32 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.70 _reflns_shell.pdbx_redundancy 3.1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2V7S _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 13939 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6.00 _refine.ls_d_res_high 1.96 _refine.ls_percent_reflns_obs 97.6 _refine.ls_R_factor_obs 0.192 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.190 _refine.ls_R_factor_R_free 0.223 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 728 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.939 _refine.correlation_coeff_Fo_to_Fc_free 0.912 _refine.B_iso_mean 23.93 _refine.aniso_B[1][1] -1.06000 _refine.aniso_B[2][2] 0.64000 _refine.aniso_B[3][3] 0.12000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] -0.90000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.155 _refine.pdbx_overall_ESU_R_Free 0.141 _refine.overall_SU_ML 0.086 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.910 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1304 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 62 _refine_hist.number_atoms_total 1384 _refine_hist.d_res_high 1.96 _refine_hist.d_res_low 6.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.022 ? 1340 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.496 1.969 ? 1806 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.494 5.000 ? 168 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.700 24.219 ? 64 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.764 15.000 ? 227 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.127 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.107 0.200 ? 201 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 1010 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.205 0.200 ? 610 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.301 0.200 ? 942 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.147 0.200 ? 66 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.214 0.200 ? 40 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.122 0.200 ? 10 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.090 1.500 ? 874 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.491 2.000 ? 1345 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.982 3.000 ? 527 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 4.448 4.500 ? 461 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.96 _refine_ls_shell.d_res_low 2.00 _refine_ls_shell.number_reflns_R_work 715 _refine_ls_shell.R_factor_R_work 0.1940 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2380 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 29 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2V7S _struct.title 'Crystal structure of the putative lipoprotein LppA from Mycobacterium tuberculosis' _struct.pdbx_descriptor 'PROBABLE CONSERVED LIPOPROTEIN LPPA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2V7S _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.text 'LIPOPROTEIN, UNKNOWN FUNCTION, PUTATIVE LIPOPROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 36 ? ARG A 54 ? ASP A 40 ARG A 58 1 ? 19 HELX_P HELX_P2 2 ASN A 55 ? GLY A 57 ? ASN A 59 GLY A 61 5 ? 3 HELX_P HELX_P3 3 SER A 58 ? ILE A 81 ? SER A 62 ILE A 85 1 ? 24 HELX_P HELX_P4 4 ASP A 91 ? GLY A 101 ? ASP A 95 GLY A 105 1 ? 11 HELX_P HELX_P5 5 SER A 127 ? LYS A 144 ? SER A 131 LYS A 148 1 ? 18 HELX_P HELX_P6 6 LEU A 190 ? ASP A 195 ? LEU A 194 ASP A 199 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 104 SG ? ? ? 1_555 A CYS 187 SG ? ? A CYS 108 A CYS 191 1_555 ? ? ? ? ? ? ? 2.038 ? covale1 covale ? ? A SER 52 C ? ? ? 1_555 A MSE 53 N ? ? A SER 56 A MSE 57 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale ? ? A MSE 53 C ? ? ? 1_555 A ARG 54 N ? ? A MSE 57 A ARG 58 1_555 ? ? ? ? ? ? ? 1.334 ? covale3 covale ? ? A VAL 120 C ? ? ? 1_555 A MSE 121 N ? ? A VAL 124 A MSE 125 1_555 ? ? ? ? ? ? ? 1.343 ? covale4 covale ? ? A MSE 121 C ? ? ? 1_555 A PHE 122 N ? ? A MSE 125 A PHE 126 1_555 ? ? ? ? ? ? ? 1.338 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 6 ? AB ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 TRP A 86 ? PHE A 88 ? TRP A 90 PHE A 92 AA 2 VAL A 120 ? PHE A 122 ? VAL A 124 PHE A 126 AA 3 ALA A 179 ? THR A 184 ? ALA A 183 THR A 188 AA 4 TYR A 169 ? GLN A 175 ? TYR A 173 GLN A 179 AA 5 ARG A 160 ? GLY A 166 ? ARG A 164 GLY A 170 AA 6 THR A 149 ? SER A 151 ? THR A 153 SER A 155 AB 1 ALA A 102 ? LEU A 103 ? ALA A 106 LEU A 107 AB 2 ALA A 112 ? ARG A 114 ? ALA A 116 ARG A 118 AB 3 PHE A 188 ? LEU A 189 ? PHE A 192 LEU A 193 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LYS A 87 ? N LYS A 91 O MSE A 121 ? O MSE A 125 AA 2 3 N PHE A 122 ? N PHE A 126 O ALA A 179 ? O ALA A 183 AA 3 4 N THR A 184 ? N THR A 188 O GLU A 170 ? O GLU A 174 AA 4 5 N GLN A 175 ? N GLN A 179 O ARG A 160 ? O ARG A 164 AA 5 6 N GLN A 165 ? N GLN A 169 O THR A 149 ? O THR A 153 AB 1 2 N ALA A 102 ? N ALA A 106 O ARG A 114 ? O ARG A 118 AB 2 3 N ARG A 113 ? N ARG A 117 O PHE A 188 ? O PHE A 192 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE GOL A 1208' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE GOL A 1209' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE GOL A 1210' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 ARG A 54 ? ARG A 58 . ? 4_454 ? 2 AC1 8 GLY A 57 ? GLY A 61 . ? 4_454 ? 3 AC1 8 THR A 85 ? THR A 89 . ? 1_555 ? 4 AC1 8 LYS A 87 ? LYS A 91 . ? 1_555 ? 5 AC1 8 MSE A 121 ? MSE A 125 . ? 1_555 ? 6 AC1 8 PHE A 122 ? PHE A 126 . ? 1_555 ? 7 AC1 8 GLY A 123 ? GLY A 127 . ? 1_555 ? 8 AC1 8 HOH E . ? HOH A 2061 . ? 1_555 ? 9 AC2 4 TRP A 86 ? TRP A 90 . ? 1_555 ? 10 AC2 4 LYS A 87 ? LYS A 91 . ? 1_555 ? 11 AC2 4 PHE A 88 ? PHE A 92 . ? 1_555 ? 12 AC2 4 HOH E . ? HOH A 2062 . ? 1_555 ? 13 AC3 6 GLU A 44 ? GLU A 48 . ? 3_455 ? 14 AC3 6 SER A 127 ? SER A 131 . ? 1_555 ? 15 AC3 6 ALA A 128 ? ALA A 132 . ? 1_555 ? 16 AC3 6 GLU A 129 ? GLU A 133 . ? 1_555 ? 17 AC3 6 ARG A 160 ? ARG A 164 . ? 1_555 ? 18 AC3 6 GLY A 199 ? GLY A 203 . ? 3_455 ? # _database_PDB_matrix.entry_id 2V7S _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2V7S _atom_sites.fract_transf_matrix[1][1] 0.009524 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001582 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020072 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024016 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 5 ? ? ? A . n A 1 2 SER 2 6 ? ? ? A . n A 1 3 TYR 3 7 ? ? ? A . n A 1 4 TYR 4 8 ? ? ? A . n A 1 5 HIS 5 9 ? ? ? A . n A 1 6 HIS 6 10 ? ? ? A . n A 1 7 HIS 7 11 ? ? ? A . n A 1 8 HIS 8 12 ? ? ? A . n A 1 9 HIS 9 13 ? ? ? A . n A 1 10 HIS 10 14 ? ? ? A . n A 1 11 LEU 11 15 ? ? ? A . n A 1 12 GLU 12 16 ? ? ? A . n A 1 13 SER 13 17 ? ? ? A . n A 1 14 THR 14 18 ? ? ? A . n A 1 15 SER 15 19 ? ? ? A . n A 1 16 LEU 16 20 ? ? ? A . n A 1 17 TYR 17 21 ? ? ? A . n A 1 18 LYS 18 22 ? ? ? A . n A 1 19 LYS 19 23 ? ? ? A . n A 1 20 ALA 20 24 ? ? ? A . n A 1 21 GLY 21 25 ? ? ? A . n A 1 22 SER 22 26 ? ? ? A . n A 1 23 GLU 23 27 ? ? ? A . n A 1 24 ASN 24 28 ? ? ? A . n A 1 25 LEU 25 29 ? ? ? A . n A 1 26 TYR 26 30 ? ? ? A . n A 1 27 PHE 27 31 ? ? ? A . n A 1 28 GLN 28 32 ? ? ? A . n A 1 29 GLY 29 33 ? ? ? A . n A 1 30 THR 30 34 ? ? ? A . n A 1 31 MSE 31 35 ? ? ? A . n A 1 32 ASP 32 36 ? ? ? A . n A 1 33 HIS 33 37 ? ? ? A . n A 1 34 ASN 34 38 ? ? ? A . n A 1 35 PRO 35 39 39 PRO PRO A . n A 1 36 ASP 36 40 40 ASP ASP A . n A 1 37 THR 37 41 41 THR THR A . n A 1 38 SER 38 42 42 SER SER A . n A 1 39 ARG 39 43 43 ARG ARG A . n A 1 40 ARG 40 44 44 ARG ARG A . n A 1 41 LEU 41 45 45 LEU LEU A . n A 1 42 THR 42 46 46 THR THR A . n A 1 43 GLY 43 47 47 GLY GLY A . n A 1 44 GLU 44 48 48 GLU GLU A . n A 1 45 GLN 45 49 49 GLN GLN A . n A 1 46 LYS 46 50 50 LYS LYS A . n A 1 47 ILE 47 51 51 ILE ILE A . n A 1 48 GLN 48 52 52 GLN GLN A . n A 1 49 LEU 49 53 53 LEU LEU A . n A 1 50 ILE 50 54 54 ILE ILE A . n A 1 51 ASP 51 55 55 ASP ASP A . n A 1 52 SER 52 56 56 SER SER A . n A 1 53 MSE 53 57 57 MSE MSE A . n A 1 54 ARG 54 58 58 ARG ARG A . n A 1 55 ASN 55 59 59 ASN ASN A . n A 1 56 LYS 56 60 60 LYS LYS A . n A 1 57 GLY 57 61 61 GLY GLY A . n A 1 58 SER 58 62 62 SER SER A . n A 1 59 TYR 59 63 63 TYR TYR A . n A 1 60 GLU 60 64 64 GLU GLU A . n A 1 61 ALA 61 65 65 ALA ALA A . n A 1 62 ALA 62 66 66 ALA ALA A . n A 1 63 ARG 63 67 67 ARG ARG A . n A 1 64 GLU 64 68 68 GLU GLU A . n A 1 65 ARG 65 69 69 ARG ARG A . n A 1 66 LEU 66 70 70 LEU LEU A . n A 1 67 THR 67 71 71 THR THR A . n A 1 68 ALA 68 72 72 ALA ALA A . n A 1 69 THR 69 73 73 THR THR A . n A 1 70 ALA 70 74 74 ALA ALA A . n A 1 71 ARG 71 75 75 ARG ARG A . n A 1 72 ILE 72 76 76 ILE ILE A . n A 1 73 ILE 73 77 77 ILE ILE A . n A 1 74 ALA 74 78 78 ALA ALA A . n A 1 75 ASP 75 79 79 ASP ASP A . n A 1 76 ARG 76 80 80 ARG ARG A . n A 1 77 VAL 77 81 81 VAL VAL A . n A 1 78 SER 78 82 82 SER SER A . n A 1 79 ALA 79 83 83 ALA ALA A . n A 1 80 ALA 80 84 84 ALA ALA A . n A 1 81 ILE 81 85 85 ILE ILE A . n A 1 82 PRO 82 86 86 PRO PRO A . n A 1 83 GLY 83 87 87 GLY GLY A . n A 1 84 GLN 84 88 88 GLN GLN A . n A 1 85 THR 85 89 89 THR THR A . n A 1 86 TRP 86 90 90 TRP TRP A . n A 1 87 LYS 87 91 91 LYS LYS A . n A 1 88 PHE 88 92 92 PHE PHE A . n A 1 89 ASP 89 93 93 ASP ASP A . n A 1 90 ASP 90 94 94 ASP ASP A . n A 1 91 ASP 91 95 95 ASP ASP A . n A 1 92 PRO 92 96 96 PRO PRO A . n A 1 93 ASN 93 97 97 ASN ASN A . n A 1 94 ILE 94 98 98 ILE ILE A . n A 1 95 GLN 95 99 99 GLN GLN A . n A 1 96 GLN 96 100 100 GLN GLN A . n A 1 97 SER 97 101 101 SER SER A . n A 1 98 ASP 98 102 102 ASP ASP A . n A 1 99 ARG 99 103 103 ARG ARG A . n A 1 100 ASN 100 104 104 ASN ASN A . n A 1 101 GLY 101 105 105 GLY GLY A . n A 1 102 ALA 102 106 106 ALA ALA A . n A 1 103 LEU 103 107 107 LEU LEU A . n A 1 104 CYS 104 108 108 CYS CYS A . n A 1 105 ASP 105 109 109 ASP ASP A . n A 1 106 LYS 106 110 110 LYS LYS A . n A 1 107 LEU 107 111 111 LEU LEU A . n A 1 108 THR 108 112 112 THR THR A . n A 1 109 ALA 109 113 113 ALA ALA A . n A 1 110 ASP 110 114 114 ASP ASP A . n A 1 111 ILE 111 115 115 ILE ILE A . n A 1 112 ALA 112 116 116 ALA ALA A . n A 1 113 ARG 113 117 117 ARG ARG A . n A 1 114 ARG 114 118 118 ARG ARG A . n A 1 115 PRO 115 119 119 PRO PRO A . n A 1 116 ILE 116 120 120 ILE ILE A . n A 1 117 ALA 117 121 121 ALA ALA A . n A 1 118 ASN 118 122 122 ASN ASN A . n A 1 119 SER 119 123 123 SER SER A . n A 1 120 VAL 120 124 124 VAL VAL A . n A 1 121 MSE 121 125 125 MSE MSE A . n A 1 122 PHE 122 126 126 PHE PHE A . n A 1 123 GLY 123 127 127 GLY GLY A . n A 1 124 ALA 124 128 128 ALA ALA A . n A 1 125 THR 125 129 129 THR THR A . n A 1 126 PHE 126 130 130 PHE PHE A . n A 1 127 SER 127 131 131 SER SER A . n A 1 128 ALA 128 132 132 ALA ALA A . n A 1 129 GLU 129 133 133 GLU GLU A . n A 1 130 ASP 130 134 134 ASP ASP A . n A 1 131 PHE 131 135 135 PHE PHE A . n A 1 132 LYS 132 136 136 LYS LYS A . n A 1 133 ILE 133 137 137 ILE ILE A . n A 1 134 ALA 134 138 138 ALA ALA A . n A 1 135 ALA 135 139 139 ALA ALA A . n A 1 136 ASN 136 140 140 ASN ASN A . n A 1 137 ILE 137 141 141 ILE ILE A . n A 1 138 VAL 138 142 142 VAL VAL A . n A 1 139 ARG 139 143 143 ARG ARG A . n A 1 140 GLU 140 144 144 GLU GLU A . n A 1 141 GLU 141 145 145 GLU GLU A . n A 1 142 ALA 142 146 146 ALA ALA A . n A 1 143 ALA 143 147 147 ALA ALA A . n A 1 144 LYS 144 148 148 LYS LYS A . n A 1 145 TYR 145 149 149 TYR TYR A . n A 1 146 GLY 146 150 150 GLY GLY A . n A 1 147 ALA 147 151 151 ALA ALA A . n A 1 148 THR 148 152 152 THR THR A . n A 1 149 THR 149 153 153 THR THR A . n A 1 150 GLU 150 154 154 GLU GLU A . n A 1 151 SER 151 155 155 SER SER A . n A 1 152 SER 152 156 156 SER SER A . n A 1 153 LEU 153 157 157 LEU LEU A . n A 1 154 PHE 154 158 158 PHE PHE A . n A 1 155 ASN 155 159 159 ASN ASN A . n A 1 156 GLU 156 160 160 GLU GLU A . n A 1 157 SER 157 161 161 SER SER A . n A 1 158 ALA 158 162 162 ALA ALA A . n A 1 159 LYS 159 163 163 LYS LYS A . n A 1 160 ARG 160 164 164 ARG ARG A . n A 1 161 ASP 161 165 165 ASP ASP A . n A 1 162 TYR 162 166 166 TYR TYR A . n A 1 163 ASP 163 167 167 ASP ASP A . n A 1 164 VAL 164 168 168 VAL VAL A . n A 1 165 GLN 165 169 169 GLN GLN A . n A 1 166 GLY 166 170 170 GLY GLY A . n A 1 167 ASN 167 171 171 ASN ASN A . n A 1 168 GLY 168 172 172 GLY GLY A . n A 1 169 TYR 169 173 173 TYR TYR A . n A 1 170 GLU 170 174 174 GLU GLU A . n A 1 171 PHE 171 175 175 PHE PHE A . n A 1 172 ARG 172 176 176 ARG ARG A . n A 1 173 LEU 173 177 177 LEU LEU A . n A 1 174 LEU 174 178 178 LEU LEU A . n A 1 175 GLN 175 179 179 GLN GLN A . n A 1 176 ILE 176 180 180 ILE ILE A . n A 1 177 LYS 177 181 181 LYS LYS A . n A 1 178 PHE 178 182 182 PHE PHE A . n A 1 179 ALA 179 183 183 ALA ALA A . n A 1 180 THR 180 184 184 THR THR A . n A 1 181 LEU 181 185 185 LEU LEU A . n A 1 182 ASN 182 186 186 ASN ASN A . n A 1 183 ILE 183 187 187 ILE ILE A . n A 1 184 THR 184 188 188 THR THR A . n A 1 185 GLY 185 189 189 GLY GLY A . n A 1 186 ASP 186 190 190 ASP ASP A . n A 1 187 CYS 187 191 191 CYS CYS A . n A 1 188 PHE 188 192 192 PHE PHE A . n A 1 189 LEU 189 193 193 LEU LEU A . n A 1 190 LEU 190 194 194 LEU LEU A . n A 1 191 GLN 191 195 195 GLN GLN A . n A 1 192 LYS 192 196 196 LYS LYS A . n A 1 193 VAL 193 197 197 VAL VAL A . n A 1 194 LEU 194 198 198 LEU LEU A . n A 1 195 ASP 195 199 199 ASP ASP A . n A 1 196 LEU 196 200 200 LEU LEU A . n A 1 197 PRO 197 201 201 PRO PRO A . n A 1 198 ALA 198 202 202 ALA ALA A . n A 1 199 GLY 199 203 203 GLY GLY A . n A 1 200 GLN 200 204 204 GLN GLN A . n A 1 201 LEU 201 205 205 LEU LEU A . n A 1 202 PRO 202 206 206 PRO PRO A . n A 1 203 PRO 203 207 207 PRO PRO A . n A 1 204 GLU 204 208 ? ? ? A . n A 1 205 PRO 205 209 ? ? ? A . n A 1 206 PRO 206 210 ? ? ? A . n A 1 207 ILE 207 211 ? ? ? A . n A 1 208 TRP 208 212 ? ? ? A . n A 1 209 PRO 209 213 ? ? ? A . n A 1 210 THR 210 214 ? ? ? A . n A 1 211 THR 211 215 ? ? ? A . n A 1 212 SER 212 216 ? ? ? A . n A 1 213 THR 213 217 ? ? ? A . n A 1 214 PRO 214 218 ? ? ? A . n A 1 215 HIS 215 219 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 1208 1208 GOL GOL A . C 2 GOL 1 1209 1209 GOL GOL A . D 2 GOL 1 1210 1210 GOL GOL A . E 3 HOH 1 2001 2001 HOH HOH A . E 3 HOH 2 2002 2002 HOH HOH A . E 3 HOH 3 2003 2003 HOH HOH A . E 3 HOH 4 2004 2004 HOH HOH A . E 3 HOH 5 2005 2005 HOH HOH A . E 3 HOH 6 2006 2006 HOH HOH A . E 3 HOH 7 2007 2007 HOH HOH A . E 3 HOH 8 2008 2008 HOH HOH A . E 3 HOH 9 2009 2009 HOH HOH A . E 3 HOH 10 2010 2010 HOH HOH A . E 3 HOH 11 2011 2011 HOH HOH A . E 3 HOH 12 2012 2012 HOH HOH A . E 3 HOH 13 2013 2013 HOH HOH A . E 3 HOH 14 2014 2014 HOH HOH A . E 3 HOH 15 2015 2015 HOH HOH A . E 3 HOH 16 2016 2016 HOH HOH A . E 3 HOH 17 2017 2017 HOH HOH A . E 3 HOH 18 2018 2018 HOH HOH A . E 3 HOH 19 2019 2019 HOH HOH A . E 3 HOH 20 2020 2020 HOH HOH A . E 3 HOH 21 2021 2021 HOH HOH A . E 3 HOH 22 2022 2022 HOH HOH A . E 3 HOH 23 2023 2023 HOH HOH A . E 3 HOH 24 2024 2024 HOH HOH A . E 3 HOH 25 2025 2025 HOH HOH A . E 3 HOH 26 2026 2026 HOH HOH A . E 3 HOH 27 2027 2027 HOH HOH A . E 3 HOH 28 2028 2028 HOH HOH A . E 3 HOH 29 2029 2029 HOH HOH A . E 3 HOH 30 2030 2030 HOH HOH A . E 3 HOH 31 2031 2031 HOH HOH A . E 3 HOH 32 2032 2032 HOH HOH A . E 3 HOH 33 2033 2033 HOH HOH A . E 3 HOH 34 2034 2034 HOH HOH A . E 3 HOH 35 2035 2035 HOH HOH A . E 3 HOH 36 2036 2036 HOH HOH A . E 3 HOH 37 2037 2037 HOH HOH A . E 3 HOH 38 2038 2038 HOH HOH A . E 3 HOH 39 2039 2039 HOH HOH A . E 3 HOH 40 2040 2040 HOH HOH A . E 3 HOH 41 2041 2041 HOH HOH A . E 3 HOH 42 2042 2042 HOH HOH A . E 3 HOH 43 2043 2043 HOH HOH A . E 3 HOH 44 2044 2044 HOH HOH A . E 3 HOH 45 2045 2045 HOH HOH A . E 3 HOH 46 2046 2046 HOH HOH A . E 3 HOH 47 2047 2047 HOH HOH A . E 3 HOH 48 2048 2048 HOH HOH A . E 3 HOH 49 2049 2049 HOH HOH A . E 3 HOH 50 2050 2050 HOH HOH A . E 3 HOH 51 2051 2051 HOH HOH A . E 3 HOH 52 2052 2052 HOH HOH A . E 3 HOH 53 2053 2053 HOH HOH A . E 3 HOH 54 2054 2054 HOH HOH A . E 3 HOH 55 2055 2055 HOH HOH A . E 3 HOH 56 2056 2056 HOH HOH A . E 3 HOH 57 2057 2057 HOH HOH A . E 3 HOH 58 2058 2058 HOH HOH A . E 3 HOH 59 2059 2059 HOH HOH A . E 3 HOH 60 2060 2060 HOH HOH A . E 3 HOH 61 2061 2061 HOH HOH A . E 3 HOH 62 2062 2062 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 53 A MSE 57 ? MET SELENOMETHIONINE 2 A MSE 121 A MSE 125 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2900 ? 1 MORE -9.87 ? 1 'SSA (A^2)' 17100 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-09-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Non-polymer description' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -20.6971 _pdbx_refine_tls.origin_y -38.7189 _pdbx_refine_tls.origin_z -12.7807 _pdbx_refine_tls.T[1][1] -0.0831 _pdbx_refine_tls.T[2][2] -0.1474 _pdbx_refine_tls.T[3][3] -0.0931 _pdbx_refine_tls.T[1][2] -0.0074 _pdbx_refine_tls.T[1][3] -0.0008 _pdbx_refine_tls.T[2][3] -0.0188 _pdbx_refine_tls.L[1][1] 3.0697 _pdbx_refine_tls.L[2][2] 0.7702 _pdbx_refine_tls.L[3][3] 1.2827 _pdbx_refine_tls.L[1][2] -0.6875 _pdbx_refine_tls.L[1][3] 0.5788 _pdbx_refine_tls.L[2][3] -0.4196 _pdbx_refine_tls.S[1][1] -0.0807 _pdbx_refine_tls.S[1][2] -0.1250 _pdbx_refine_tls.S[1][3] 0.0775 _pdbx_refine_tls.S[2][1] 0.0312 _pdbx_refine_tls.S[2][2] 0.0780 _pdbx_refine_tls.S[2][3] -0.0267 _pdbx_refine_tls.S[3][1] -0.1297 _pdbx_refine_tls.S[3][2] 0.0035 _pdbx_refine_tls.S[3][3] 0.0027 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 39 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 207 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 SHARP phasing . ? 4 # _pdbx_entry_details.entry_id 2V7S _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE RECOMBINANT PROTEIN INCLUDES A N-TERMINAL TAG ( SEQUENCE MSYYHHHHHHLESTSLYKKAGSENLYFQG) FUSED TO RESIDUES 34-219 OF THE NP-217059 GENE) ; # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 67 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 67 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 67 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 117.11 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.19 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 159 ? ? -157.54 88.69 2 1 ILE A 180 ? ? -112.43 -82.24 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 43 ? CZ ? A ARG 39 CZ 2 1 Y 1 A ARG 43 ? NH1 ? A ARG 39 NH1 3 1 Y 1 A ARG 43 ? NH2 ? A ARG 39 NH2 4 1 Y 1 A GLU 133 ? CD ? A GLU 129 CD 5 1 Y 1 A GLU 133 ? OE1 ? A GLU 129 OE1 6 1 Y 1 A GLU 133 ? OE2 ? A GLU 129 OE2 7 1 Y 1 A LYS 163 ? CG ? A LYS 159 CG 8 1 Y 1 A LYS 163 ? CD ? A LYS 159 CD 9 1 Y 1 A LYS 163 ? CE ? A LYS 159 CE 10 1 Y 1 A LYS 163 ? NZ ? A LYS 159 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 5 ? A MSE 1 2 1 Y 1 A SER 6 ? A SER 2 3 1 Y 1 A TYR 7 ? A TYR 3 4 1 Y 1 A TYR 8 ? A TYR 4 5 1 Y 1 A HIS 9 ? A HIS 5 6 1 Y 1 A HIS 10 ? A HIS 6 7 1 Y 1 A HIS 11 ? A HIS 7 8 1 Y 1 A HIS 12 ? A HIS 8 9 1 Y 1 A HIS 13 ? A HIS 9 10 1 Y 1 A HIS 14 ? A HIS 10 11 1 Y 1 A LEU 15 ? A LEU 11 12 1 Y 1 A GLU 16 ? A GLU 12 13 1 Y 1 A SER 17 ? A SER 13 14 1 Y 1 A THR 18 ? A THR 14 15 1 Y 1 A SER 19 ? A SER 15 16 1 Y 1 A LEU 20 ? A LEU 16 17 1 Y 1 A TYR 21 ? A TYR 17 18 1 Y 1 A LYS 22 ? A LYS 18 19 1 Y 1 A LYS 23 ? A LYS 19 20 1 Y 1 A ALA 24 ? A ALA 20 21 1 Y 1 A GLY 25 ? A GLY 21 22 1 Y 1 A SER 26 ? A SER 22 23 1 Y 1 A GLU 27 ? A GLU 23 24 1 Y 1 A ASN 28 ? A ASN 24 25 1 Y 1 A LEU 29 ? A LEU 25 26 1 Y 1 A TYR 30 ? A TYR 26 27 1 Y 1 A PHE 31 ? A PHE 27 28 1 Y 1 A GLN 32 ? A GLN 28 29 1 Y 1 A GLY 33 ? A GLY 29 30 1 Y 1 A THR 34 ? A THR 30 31 1 Y 1 A MSE 35 ? A MSE 31 32 1 Y 1 A ASP 36 ? A ASP 32 33 1 Y 1 A HIS 37 ? A HIS 33 34 1 Y 1 A ASN 38 ? A ASN 34 35 1 Y 1 A GLU 208 ? A GLU 204 36 1 Y 1 A PRO 209 ? A PRO 205 37 1 Y 1 A PRO 210 ? A PRO 206 38 1 Y 1 A ILE 211 ? A ILE 207 39 1 Y 1 A TRP 212 ? A TRP 208 40 1 Y 1 A PRO 213 ? A PRO 209 41 1 Y 1 A THR 214 ? A THR 210 42 1 Y 1 A THR 215 ? A THR 211 43 1 Y 1 A SER 216 ? A SER 212 44 1 Y 1 A THR 217 ? A THR 213 45 1 Y 1 A PRO 218 ? A PRO 214 46 1 Y 1 A HIS 219 ? A HIS 215 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH #