data_2V85 # _entry.id 2V85 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2V85 pdb_00002v85 10.2210/pdb2v85/pdb PDBE EBI-33366 ? ? WWPDB D_1290033366 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2A23 unspecified 'A PHD FINGER MOTIF IN THE C-TERMINUS OF RAG2 MODULATESRECOMBINATION ACTIVITY' PDB 2V83 unspecified 'CRYSTAL STRUCTURE OF RAG2-PHD FINGER IN COMPLEX WITH H3K4ME3 PEPTIDE' PDB 2V86 unspecified 'CRYSTAL STRUCTURE OF RAG2-PHD FINGER IN COMPLEX WITH H3R2ME2AK4ME3 PEPTIDE' PDB 2V87 unspecified 'CRYSTAL STRUCTURE OF RAG2-PHD FINGER IN COMPLEX WITH H3R2ME2SK4ME3 PEPTIDE' PDB 2V88 unspecified 'CRYSTAL STRUCTURE OF RAG2-PHD FINGER IN COMPLEX WITH H3R2ME2SK4ME2 PEPTIDE' PDB 2V89 unspecified 'CRYSTAL STRUCTURE OF RAG2-PHD FINGER IN COMPLEX WITH H3K4ME3 PEPTIDE AT 1.1A RESOLUTION' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2V85 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-08-02 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ramon-Maiques, S.' 1 'Yang, W.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The Plant Homeodomain Finger of Rag2 Recognizes Histone H3 Methylated at Both Lysine-4 and Arginine-2.' Proc.Natl.Acad.Sci.USA 104 18993 ? 2007 PNASA6 US 0027-8424 0040 ? 18025461 10.1073/PNAS.0709170104 1 'Rag2 Phd Finger Couples Histone H3 Lysine 4 Trimethylation with V(D)J Recombination.' Nature 450 1106 ? 2007 NATUAS UK 0028-0836 0006 ? 18033247 10.1038/NATURE06431 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ramon-Maiques, S.' 1 ? primary 'Kuo, A.J.' 2 ? primary 'Carney, D.' 3 ? primary 'Matthews, A.G.W.' 4 ? primary 'Oettinger, M.A.' 5 ? primary 'Gozani, O.' 6 ? primary 'Yang, W.' 7 ? 1 'Matthews, A.G.W.' 8 ? 1 'Kuo, A.J.' 9 ? 1 'Ramon-Maiques, S.' 10 ? 1 'Han, S.' 11 ? 1 'Champagne, K.S.' 12 ? 1 'Ivanov, D.' 13 ? 1 'Gallardo, M.' 14 ? 1 'Carney, D.' 15 ? 1 'Cheung, P.' 16 ? 1 'Ciccone, D.N.' 17 ? 1 'Walter, K.L.' 18 ? 1 'Utz, P.J.' 19 ? 1 'Shi, Y.' 20 ? 1 'Kutateladze, T.G.' 21 ? 1 'Yang, W.' 22 ? 1 'Gozani, O.' 23 ? 1 'Oettinger, M.A.' 24 ? # _cell.entry_id 2V85 _cell.length_a 76.711 _cell.length_b 46.936 _cell.length_c 56.955 _cell.angle_alpha 90.00 _cell.angle_beta 103.65 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2V85 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'VDJ RECOMBINATION-ACTIVATING PROTEIN 2' 9360.498 2 ? ? 'RESIDUES 414-487' ? 2 polymer syn 'H3R2ME1K4ME3 PEPTIDE' 1317.561 2 ? ? 'H3 (1-21), BIOTINILATED AT C-TERMINUS' 'R2 MONOMETHYLATED AND K4 TRIMETHYLATED' 3 non-polymer syn 'ZINC ION' 65.409 4 ? ? ? ? 4 water nat water 18.015 173 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RAG2, RAG2-PHD FINGER' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPLGSPEFGYWITCCPTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLEERTLIHLSEGSNKYYCNEHVQIA RA ; ;GPLGSPEFGYWITCCPTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLEERTLIHLSEGSNKYYCNEHVQIA RA ; A,B ? 2 'polypeptide(L)' no yes 'A(NMM)T(M3L)QTARKAAG' ARTKQTARKAAG D,E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 PRO n 1 7 GLU n 1 8 PHE n 1 9 GLY n 1 10 TYR n 1 11 TRP n 1 12 ILE n 1 13 THR n 1 14 CYS n 1 15 CYS n 1 16 PRO n 1 17 THR n 1 18 CYS n 1 19 ASP n 1 20 VAL n 1 21 ASP n 1 22 ILE n 1 23 ASN n 1 24 THR n 1 25 TRP n 1 26 VAL n 1 27 PRO n 1 28 PHE n 1 29 TYR n 1 30 SER n 1 31 THR n 1 32 GLU n 1 33 LEU n 1 34 ASN n 1 35 LYS n 1 36 PRO n 1 37 ALA n 1 38 MET n 1 39 ILE n 1 40 TYR n 1 41 CYS n 1 42 SER n 1 43 HIS n 1 44 GLY n 1 45 ASP n 1 46 GLY n 1 47 HIS n 1 48 TRP n 1 49 VAL n 1 50 HIS n 1 51 ALA n 1 52 GLN n 1 53 CYS n 1 54 MET n 1 55 ASP n 1 56 LEU n 1 57 GLU n 1 58 GLU n 1 59 ARG n 1 60 THR n 1 61 LEU n 1 62 ILE n 1 63 HIS n 1 64 LEU n 1 65 SER n 1 66 GLU n 1 67 GLY n 1 68 SER n 1 69 ASN n 1 70 LYS n 1 71 TYR n 1 72 TYR n 1 73 CYS n 1 74 ASN n 1 75 GLU n 1 76 HIS n 1 77 VAL n 1 78 GLN n 1 79 ILE n 1 80 ALA n 1 81 ARG n 1 82 ALA n 2 1 ALA n 2 2 NMM n 2 3 THR n 2 4 M3L n 2 5 GLN n 2 6 THR n 2 7 ALA n 2 8 ARG n 2 9 LYS n 2 10 ALA n 2 11 ALA n 2 12 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'HOUSE MOUSE' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'MUS MUSCULUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PGEX-6P-1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'HOMO SAPIENS' _pdbx_entity_src_syn.organism_common_name HUMAN _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2V85 1 ? ? 2V85 ? 2 UNP RAG2_MOUSE 1 ? ? P21784 ? 3 UNP Q5TEC6_HUMAN 2 ? ? Q5TEC6 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2V85 A 1 ? 8 ? 2V85 406 ? 413 ? 406 413 2 2 2V85 A 9 ? 82 ? P21784 414 ? 487 ? 414 487 3 1 2V85 B 1 ? 8 ? 2V85 406 ? 413 ? 406 413 4 2 2V85 B 9 ? 82 ? P21784 414 ? 487 ? 414 487 5 3 2V85 D 1 ? 12 ? Q5TEC6 2 ? 13 ? 1 12 6 3 2V85 E 1 ? 12 ? Q5TEC6 2 ? 13 ? 1 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 5 2V85 ALA D 10 ? UNP Q5TEC6 SER 11 conflict 10 1 5 2V85 ALA D 11 ? UNP Q5TEC6 THR 11 conflict 11 2 6 2V85 ALA E 10 ? UNP Q5TEC6 SER 11 conflict 10 3 6 2V85 ALA E 11 ? UNP Q5TEC6 THR 11 conflict 11 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 M3L 'L-peptide linking' n N-TRIMETHYLLYSINE ? 'C9 H21 N2 O2 1' 189.275 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NMM 'L-peptide linking' n '(2S)-2-amino-5-[(N-methylcarbamimidoyl)amino]pentanoic acid' L-NMMA 'C7 H16 N4 O2' 188.228 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2V85 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.53 _exptl_crystal.density_percent_sol 50.92 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION. HANGING DROP. 20% PEG 3350, 0.2 M POTASSIUM THIOCYANATE' # _diffrn.id 1 _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2006-03-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97182 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength 0.97182 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2V85 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.00 _reflns.number_obs 13424 _reflns.number_all ? _reflns.percent_possible_obs 98.5 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.90 _reflns.B_iso_Wilson_estimate 19.9 _reflns.pdbx_redundancy 3.4 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 89.6 _reflns_shell.Rmerge_I_obs 0.18 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.00 _reflns_shell.pdbx_redundancy 3.0 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2V85 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13116 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 10000 _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50 _refine.ls_d_res_high 2.0 _refine.ls_percent_reflns_obs 97.4 _refine.ls_R_factor_obs 0.1866 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1866 _refine.ls_R_factor_R_free 0.1974 _refine.ls_R_factor_R_free_error 0.0077 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 664 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 19.85 _refine.aniso_B[1][1] -5.846 _refine.aniso_B[2][2] 3.462 _refine.aniso_B[3][3] 2.384 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -2.827 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.392243 _refine.solvent_model_param_bsol 36.575 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 2V83' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 2V85 _refine_analyze.Luzzati_coordinate_error_obs 0.202 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1405 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 173 _refine_hist.number_atoms_total 1582 _refine_hist.d_res_high 2.0 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.012047 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.82096 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 13 _refine_ls_shell.d_res_high 2 _refine_ls_shell.d_res_low 2.05 _refine_ls_shell.number_reflns_R_work 912 _refine_ls_shell.R_factor_R_work 0.1981 _refine_ls_shell.percent_reflns_obs 89.6 _refine_ls_shell.R_factor_R_free 0.2089 _refine_ls_shell.R_factor_R_free_error 0.031 _refine_ls_shell.percent_reflns_R_free 4.6 _refine_ls_shell.number_reflns_R_free 44 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2V85 _struct.title 'Crystal structure of RAG2-PHD finger in complex with H3R2me1K4me3 peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2V85 _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text ;V(D)J RECOMBINATION, COVALENT MODIFICATIONS, RAG2, HISTONE, NUCLEUS, NUCLEASE, HYDROLASE, PHD FINGER, DNA-BINDING, RECOMBINASE, ENDONUCLEASE, TRIMETHYL LYSINE, DNA RECOMBINATION, PROTEIN BINDING ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 52 ? ASP A 55 ? GLN A 457 ASP A 460 5 ? 4 HELX_P HELX_P2 2 GLU A 57 ? GLU A 66 ? GLU A 462 GLU A 471 1 ? 10 HELX_P HELX_P3 3 SER B 5 ? TYR B 10 ? SER B 410 TYR B 415 5 ? 6 HELX_P HELX_P4 4 GLN B 52 ? ASP B 55 ? GLN B 457 ASP B 460 5 ? 4 HELX_P HELX_P5 5 GLU B 57 ? GLY B 67 ? GLU B 462 GLY B 472 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C ALA 1 C ? ? ? 1_555 C NMM 2 N ? ? D ALA 1 D NMM 2 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? C NMM 2 C ? ? ? 1_555 C THR 3 N ? ? D NMM 2 D THR 3 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale3 covale both ? C THR 3 C ? ? ? 1_555 C M3L 4 N ? ? D THR 3 D M3L 4 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? C M3L 4 C ? ? ? 1_555 C GLN 5 N ? ? D M3L 4 D GLN 5 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? D ALA 1 C ? ? ? 1_555 D NMM 2 N ? ? E ALA 1 E NMM 2 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale6 covale both ? D NMM 2 C ? ? ? 1_555 D THR 3 N ? ? E NMM 2 E THR 3 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale7 covale both ? D THR 3 C ? ? ? 1_555 D M3L 4 N ? ? E THR 3 E M3L 4 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale8 covale both ? D M3L 4 C ? ? ? 1_555 D GLN 5 N ? ? E M3L 4 E GLN 5 1_555 ? ? ? ? ? ? ? 1.330 ? ? metalc1 metalc ? ? A CYS 14 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 419 A ZN 1488 1_555 ? ? ? ? ? ? ? 2.311 ? ? metalc2 metalc ? ? A CYS 18 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 423 A ZN 1488 1_555 ? ? ? ? ? ? ? 2.375 ? ? metalc3 metalc ? ? A CYS 41 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 446 A ZN 1489 1_555 ? ? ? ? ? ? ? 2.255 ? ? metalc4 metalc ? ? A HIS 47 NE2 ? ? ? 1_555 F ZN . ZN ? ? A HIS 452 A ZN 1489 1_555 ? ? ? ? ? ? ? 2.089 ? ? metalc5 metalc ? ? A HIS 50 ND1 ? ? ? 1_555 E ZN . ZN ? ? A HIS 455 A ZN 1488 1_555 ? ? ? ? ? ? ? 2.132 ? ? metalc6 metalc ? ? A CYS 53 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 458 A ZN 1488 1_555 ? ? ? ? ? ? ? 2.350 ? ? metalc7 metalc ? ? A CYS 73 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 478 A ZN 1489 1_555 ? ? ? ? ? ? ? 2.324 ? ? metalc8 metalc ? ? A HIS 76 ND1 ? ? ? 1_555 F ZN . ZN ? ? A HIS 481 A ZN 1489 1_555 ? ? ? ? ? ? ? 2.231 ? ? metalc9 metalc ? ? B CYS 14 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 419 B ZN 1487 1_555 ? ? ? ? ? ? ? 2.348 ? ? metalc10 metalc ? ? B CYS 18 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 423 B ZN 1487 1_555 ? ? ? ? ? ? ? 2.425 ? ? metalc11 metalc ? ? B CYS 41 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 446 B ZN 1488 1_555 ? ? ? ? ? ? ? 2.287 ? ? metalc12 metalc ? ? B HIS 47 NE2 ? ? ? 1_555 H ZN . ZN ? ? B HIS 452 B ZN 1488 1_555 ? ? ? ? ? ? ? 2.100 ? ? metalc13 metalc ? ? B HIS 50 ND1 ? ? ? 1_555 G ZN . ZN ? ? B HIS 455 B ZN 1487 1_555 ? ? ? ? ? ? ? 2.044 ? ? metalc14 metalc ? ? B CYS 53 SG ? ? ? 1_555 G ZN . ZN ? ? B CYS 458 B ZN 1487 1_555 ? ? ? ? ? ? ? 2.307 ? ? metalc15 metalc ? ? B CYS 73 SG ? ? ? 1_555 H ZN . ZN ? ? B CYS 478 B ZN 1488 1_555 ? ? ? ? ? ? ? 2.345 ? ? metalc16 metalc ? ? B HIS 76 ND1 ? ? ? 1_555 H ZN . ZN ? ? B HIS 481 B ZN 1488 1_555 ? ? ? ? ? ? ? 2.171 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? BA ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel BA 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 MET A 38 ? CYS A 41 ? MET A 443 CYS A 446 AA 2 HIS A 47 ? HIS A 50 ? HIS A 452 HIS A 455 BA 1 MET B 38 ? CYS B 41 ? MET B 443 CYS B 446 BA 2 HIS B 47 ? HIS B 50 ? HIS B 452 HIS B 455 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N CYS A 41 ? N CYS A 446 O HIS A 47 ? O HIS A 452 BA 1 2 N CYS B 41 ? N CYS B 446 O HIS B 47 ? O HIS B 452 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 1488 ? 4 'BINDING SITE FOR RESIDUE ZN A 1488' AC2 Software A ZN 1489 ? 4 'BINDING SITE FOR RESIDUE ZN A 1489' AC3 Software B ZN 1487 ? 4 'BINDING SITE FOR RESIDUE ZN B 1487' AC4 Software B ZN 1488 ? 4 'BINDING SITE FOR RESIDUE ZN B 1488' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 14 ? CYS A 419 . ? 1_555 ? 2 AC1 4 CYS A 18 ? CYS A 423 . ? 1_555 ? 3 AC1 4 HIS A 50 ? HIS A 455 . ? 1_555 ? 4 AC1 4 CYS A 53 ? CYS A 458 . ? 1_555 ? 5 AC2 4 CYS A 41 ? CYS A 446 . ? 1_555 ? 6 AC2 4 HIS A 47 ? HIS A 452 . ? 1_555 ? 7 AC2 4 CYS A 73 ? CYS A 478 . ? 1_555 ? 8 AC2 4 HIS A 76 ? HIS A 481 . ? 1_555 ? 9 AC3 4 CYS B 14 ? CYS B 419 . ? 1_555 ? 10 AC3 4 CYS B 18 ? CYS B 423 . ? 1_555 ? 11 AC3 4 HIS B 50 ? HIS B 455 . ? 1_555 ? 12 AC3 4 CYS B 53 ? CYS B 458 . ? 1_555 ? 13 AC4 4 CYS B 41 ? CYS B 446 . ? 1_555 ? 14 AC4 4 HIS B 47 ? HIS B 452 . ? 1_555 ? 15 AC4 4 CYS B 73 ? CYS B 478 . ? 1_555 ? 16 AC4 4 HIS B 76 ? HIS B 481 . ? 1_555 ? # _database_PDB_matrix.entry_id 2V85 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2V85 _atom_sites.fract_transf_matrix[1][1] 0.013036 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003166 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021306 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018068 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 406 ? ? ? A . n A 1 2 PRO 2 407 ? ? ? A . n A 1 3 LEU 3 408 ? ? ? A . n A 1 4 GLY 4 409 ? ? ? A . n A 1 5 SER 5 410 ? ? ? A . n A 1 6 PRO 6 411 ? ? ? A . n A 1 7 GLU 7 412 ? ? ? A . n A 1 8 PHE 8 413 ? ? ? A . n A 1 9 GLY 9 414 414 GLY GLY A . n A 1 10 TYR 10 415 415 TYR TYR A . n A 1 11 TRP 11 416 416 TRP TRP A . n A 1 12 ILE 12 417 417 ILE ILE A . n A 1 13 THR 13 418 418 THR THR A . n A 1 14 CYS 14 419 419 CYS CYS A . n A 1 15 CYS 15 420 420 CYS CYS A . n A 1 16 PRO 16 421 421 PRO PRO A . n A 1 17 THR 17 422 422 THR THR A . n A 1 18 CYS 18 423 423 CYS CYS A . n A 1 19 ASP 19 424 424 ASP ASP A . n A 1 20 VAL 20 425 425 VAL VAL A . n A 1 21 ASP 21 426 426 ASP ASP A . n A 1 22 ILE 22 427 427 ILE ILE A . n A 1 23 ASN 23 428 428 ASN ASN A . n A 1 24 THR 24 429 429 THR THR A . n A 1 25 TRP 25 430 430 TRP TRP A . n A 1 26 VAL 26 431 431 VAL VAL A . n A 1 27 PRO 27 432 432 PRO PRO A . n A 1 28 PHE 28 433 433 PHE PHE A . n A 1 29 TYR 29 434 434 TYR TYR A . n A 1 30 SER 30 435 435 SER SER A . n A 1 31 THR 31 436 436 THR THR A . n A 1 32 GLU 32 437 437 GLU GLU A . n A 1 33 LEU 33 438 438 LEU LEU A . n A 1 34 ASN 34 439 439 ASN ASN A . n A 1 35 LYS 35 440 440 LYS LYS A . n A 1 36 PRO 36 441 441 PRO PRO A . n A 1 37 ALA 37 442 442 ALA ALA A . n A 1 38 MET 38 443 443 MET MET A . n A 1 39 ILE 39 444 444 ILE ILE A . n A 1 40 TYR 40 445 445 TYR TYR A . n A 1 41 CYS 41 446 446 CYS CYS A . n A 1 42 SER 42 447 447 SER SER A . n A 1 43 HIS 43 448 448 HIS HIS A . n A 1 44 GLY 44 449 449 GLY GLY A . n A 1 45 ASP 45 450 450 ASP ASP A . n A 1 46 GLY 46 451 451 GLY GLY A . n A 1 47 HIS 47 452 452 HIS HIS A . n A 1 48 TRP 48 453 453 TRP TRP A . n A 1 49 VAL 49 454 454 VAL VAL A . n A 1 50 HIS 50 455 455 HIS HIS A . n A 1 51 ALA 51 456 456 ALA ALA A . n A 1 52 GLN 52 457 457 GLN GLN A . n A 1 53 CYS 53 458 458 CYS CYS A . n A 1 54 MET 54 459 459 MET MET A . n A 1 55 ASP 55 460 460 ASP ASP A . n A 1 56 LEU 56 461 461 LEU LEU A . n A 1 57 GLU 57 462 462 GLU GLU A . n A 1 58 GLU 58 463 463 GLU GLU A . n A 1 59 ARG 59 464 464 ARG ARG A . n A 1 60 THR 60 465 465 THR THR A . n A 1 61 LEU 61 466 466 LEU LEU A . n A 1 62 ILE 62 467 467 ILE ILE A . n A 1 63 HIS 63 468 468 HIS HIS A . n A 1 64 LEU 64 469 469 LEU LEU A . n A 1 65 SER 65 470 470 SER SER A . n A 1 66 GLU 66 471 471 GLU GLU A . n A 1 67 GLY 67 472 472 GLY GLY A . n A 1 68 SER 68 473 473 SER SER A . n A 1 69 ASN 69 474 474 ASN ASN A . n A 1 70 LYS 70 475 475 LYS LYS A . n A 1 71 TYR 71 476 476 TYR TYR A . n A 1 72 TYR 72 477 477 TYR TYR A . n A 1 73 CYS 73 478 478 CYS CYS A . n A 1 74 ASN 74 479 479 ASN ASN A . n A 1 75 GLU 75 480 480 GLU GLU A . n A 1 76 HIS 76 481 481 HIS HIS A . n A 1 77 VAL 77 482 482 VAL VAL A . n A 1 78 GLN 78 483 483 GLN GLN A . n A 1 79 ILE 79 484 484 ILE ILE A . n A 1 80 ALA 80 485 485 ALA ALA A . n A 1 81 ARG 81 486 486 ARG ARG A . n A 1 82 ALA 82 487 487 ALA ALA A . n B 1 1 GLY 1 406 406 GLY GLY B . n B 1 2 PRO 2 407 407 PRO PRO B . n B 1 3 LEU 3 408 408 LEU LEU B . n B 1 4 GLY 4 409 409 GLY GLY B . n B 1 5 SER 5 410 410 SER SER B . n B 1 6 PRO 6 411 411 PRO PRO B . n B 1 7 GLU 7 412 412 GLU GLU B . n B 1 8 PHE 8 413 413 PHE PHE B . n B 1 9 GLY 9 414 414 GLY GLY B . n B 1 10 TYR 10 415 415 TYR TYR B . n B 1 11 TRP 11 416 416 TRP TRP B . n B 1 12 ILE 12 417 417 ILE ILE B . n B 1 13 THR 13 418 418 THR THR B . n B 1 14 CYS 14 419 419 CYS CYS B . n B 1 15 CYS 15 420 420 CYS CYS B . n B 1 16 PRO 16 421 421 PRO PRO B . n B 1 17 THR 17 422 422 THR THR B . n B 1 18 CYS 18 423 423 CYS CYS B . n B 1 19 ASP 19 424 424 ASP ASP B . n B 1 20 VAL 20 425 425 VAL VAL B . n B 1 21 ASP 21 426 426 ASP ASP B . n B 1 22 ILE 22 427 427 ILE ILE B . n B 1 23 ASN 23 428 428 ASN ASN B . n B 1 24 THR 24 429 429 THR THR B . n B 1 25 TRP 25 430 430 TRP TRP B . n B 1 26 VAL 26 431 431 VAL VAL B . n B 1 27 PRO 27 432 432 PRO PRO B . n B 1 28 PHE 28 433 433 PHE PHE B . n B 1 29 TYR 29 434 434 TYR TYR B . n B 1 30 SER 30 435 435 SER SER B . n B 1 31 THR 31 436 436 THR THR B . n B 1 32 GLU 32 437 437 GLU GLU B . n B 1 33 LEU 33 438 438 LEU LEU B . n B 1 34 ASN 34 439 439 ASN ASN B . n B 1 35 LYS 35 440 440 LYS LYS B . n B 1 36 PRO 36 441 441 PRO PRO B . n B 1 37 ALA 37 442 442 ALA ALA B . n B 1 38 MET 38 443 443 MET MET B . n B 1 39 ILE 39 444 444 ILE ILE B . n B 1 40 TYR 40 445 445 TYR TYR B . n B 1 41 CYS 41 446 446 CYS CYS B . n B 1 42 SER 42 447 447 SER SER B . n B 1 43 HIS 43 448 448 HIS HIS B . n B 1 44 GLY 44 449 449 GLY GLY B . n B 1 45 ASP 45 450 450 ASP ASP B . n B 1 46 GLY 46 451 451 GLY GLY B . n B 1 47 HIS 47 452 452 HIS HIS B . n B 1 48 TRP 48 453 453 TRP TRP B . n B 1 49 VAL 49 454 454 VAL VAL B . n B 1 50 HIS 50 455 455 HIS HIS B . n B 1 51 ALA 51 456 456 ALA ALA B . n B 1 52 GLN 52 457 457 GLN GLN B . n B 1 53 CYS 53 458 458 CYS CYS B . n B 1 54 MET 54 459 459 MET MET B . n B 1 55 ASP 55 460 460 ASP ASP B . n B 1 56 LEU 56 461 461 LEU LEU B . n B 1 57 GLU 57 462 462 GLU GLU B . n B 1 58 GLU 58 463 463 GLU GLU B . n B 1 59 ARG 59 464 464 ARG ARG B . n B 1 60 THR 60 465 465 THR THR B . n B 1 61 LEU 61 466 466 LEU LEU B . n B 1 62 ILE 62 467 467 ILE ILE B . n B 1 63 HIS 63 468 468 HIS HIS B . n B 1 64 LEU 64 469 469 LEU LEU B . n B 1 65 SER 65 470 470 SER SER B . n B 1 66 GLU 66 471 471 GLU GLU B . n B 1 67 GLY 67 472 472 GLY GLY B . n B 1 68 SER 68 473 473 SER SER B . n B 1 69 ASN 69 474 474 ASN ASN B . n B 1 70 LYS 70 475 475 LYS LYS B . n B 1 71 TYR 71 476 476 TYR TYR B . n B 1 72 TYR 72 477 477 TYR TYR B . n B 1 73 CYS 73 478 478 CYS CYS B . n B 1 74 ASN 74 479 479 ASN ASN B . n B 1 75 GLU 75 480 480 GLU GLU B . n B 1 76 HIS 76 481 481 HIS HIS B . n B 1 77 VAL 77 482 482 VAL VAL B . n B 1 78 GLN 78 483 483 GLN GLN B . n B 1 79 ILE 79 484 484 ILE ILE B . n B 1 80 ALA 80 485 485 ALA ALA B . n B 1 81 ARG 81 486 486 ARG ARG B . n B 1 82 ALA 82 487 487 ALA ALA B . n C 2 1 ALA 1 1 1 ALA ALA D . n C 2 2 NMM 2 2 2 NMM NMM D . n C 2 3 THR 3 3 3 THR THR D . n C 2 4 M3L 4 4 4 M3L M3L D . n C 2 5 GLN 5 5 5 GLN GLN D . n C 2 6 THR 6 6 6 THR THR D . n C 2 7 ALA 7 7 7 ALA ALA D . n C 2 8 ARG 8 8 8 ARG ARG D . n C 2 9 LYS 9 9 9 LYS LYS D . n C 2 10 ALA 10 10 10 ALA ALA D . n C 2 11 ALA 11 11 11 ALA ALA D . n C 2 12 GLY 12 12 12 GLY GLY D . n D 2 1 ALA 1 1 1 ALA ALA E . n D 2 2 NMM 2 2 2 NMM NMM E . n D 2 3 THR 3 3 3 THR THR E . n D 2 4 M3L 4 4 4 M3L M3L E . n D 2 5 GLN 5 5 5 GLN GLN E . n D 2 6 THR 6 6 6 THR THR E . n D 2 7 ALA 7 7 7 ALA ALA E . n D 2 8 ARG 8 8 8 ARG ARG E . n D 2 9 LYS 9 9 9 LYS LYS E . n D 2 10 ALA 10 10 10 ALA ALA E . n D 2 11 ALA 11 11 ? ? ? E . n D 2 12 GLY 12 12 ? ? ? E . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN 1 1488 1488 ZN ZN A . F 3 ZN 1 1489 1489 ZN ZN A . G 3 ZN 1 1487 1487 ZN ZN B . H 3 ZN 1 1488 1488 ZN ZN B . I 4 HOH 1 2001 2001 HOH HOH A . I 4 HOH 2 2002 2002 HOH HOH A . I 4 HOH 3 2003 2003 HOH HOH A . I 4 HOH 4 2004 2004 HOH HOH A . I 4 HOH 5 2005 2005 HOH HOH A . I 4 HOH 6 2006 2006 HOH HOH A . I 4 HOH 7 2007 2007 HOH HOH A . I 4 HOH 8 2008 2008 HOH HOH A . I 4 HOH 9 2009 2009 HOH HOH A . I 4 HOH 10 2010 2010 HOH HOH A . I 4 HOH 11 2011 2011 HOH HOH A . I 4 HOH 12 2012 2012 HOH HOH A . I 4 HOH 13 2013 2013 HOH HOH A . I 4 HOH 14 2014 2014 HOH HOH A . I 4 HOH 15 2015 2015 HOH HOH A . I 4 HOH 16 2016 2016 HOH HOH A . I 4 HOH 17 2017 2017 HOH HOH A . I 4 HOH 18 2018 2018 HOH HOH A . I 4 HOH 19 2019 2019 HOH HOH A . I 4 HOH 20 2020 2020 HOH HOH A . I 4 HOH 21 2021 2021 HOH HOH A . I 4 HOH 22 2022 2022 HOH HOH A . I 4 HOH 23 2023 2023 HOH HOH A . I 4 HOH 24 2024 2024 HOH HOH A . I 4 HOH 25 2025 2025 HOH HOH A . I 4 HOH 26 2026 2026 HOH HOH A . I 4 HOH 27 2027 2027 HOH HOH A . I 4 HOH 28 2028 2028 HOH HOH A . I 4 HOH 29 2029 2029 HOH HOH A . I 4 HOH 30 2030 2030 HOH HOH A . I 4 HOH 31 2031 2031 HOH HOH A . I 4 HOH 32 2032 2032 HOH HOH A . I 4 HOH 33 2033 2033 HOH HOH A . I 4 HOH 34 2034 2034 HOH HOH A . I 4 HOH 35 2035 2035 HOH HOH A . I 4 HOH 36 2036 2036 HOH HOH A . I 4 HOH 37 2037 2037 HOH HOH A . I 4 HOH 38 2038 2038 HOH HOH A . I 4 HOH 39 2039 2039 HOH HOH A . I 4 HOH 40 2040 2040 HOH HOH A . I 4 HOH 41 2041 2041 HOH HOH A . I 4 HOH 42 2042 2042 HOH HOH A . I 4 HOH 43 2043 2043 HOH HOH A . I 4 HOH 44 2044 2044 HOH HOH A . I 4 HOH 45 2045 2045 HOH HOH A . I 4 HOH 46 2046 2046 HOH HOH A . I 4 HOH 47 2047 2047 HOH HOH A . I 4 HOH 48 2048 2048 HOH HOH A . I 4 HOH 49 2049 2049 HOH HOH A . I 4 HOH 50 2050 2050 HOH HOH A . I 4 HOH 51 2051 2051 HOH HOH A . I 4 HOH 52 2052 2052 HOH HOH A . I 4 HOH 53 2053 2053 HOH HOH A . I 4 HOH 54 2054 2054 HOH HOH A . I 4 HOH 55 2055 2055 HOH HOH A . I 4 HOH 56 2056 2056 HOH HOH A . I 4 HOH 57 2057 2057 HOH HOH A . I 4 HOH 58 2058 2058 HOH HOH A . I 4 HOH 59 2059 2059 HOH HOH A . I 4 HOH 60 2060 2060 HOH HOH A . I 4 HOH 61 2061 2061 HOH HOH A . I 4 HOH 62 2062 2062 HOH HOH A . I 4 HOH 63 2063 2063 HOH HOH A . I 4 HOH 64 2064 2064 HOH HOH A . I 4 HOH 65 2065 2065 HOH HOH A . I 4 HOH 66 2066 2066 HOH HOH A . I 4 HOH 67 2067 2067 HOH HOH A . I 4 HOH 68 2068 2068 HOH HOH A . I 4 HOH 69 2069 2069 HOH HOH A . I 4 HOH 70 2070 2070 HOH HOH A . I 4 HOH 71 2071 2071 HOH HOH A . I 4 HOH 72 2072 2072 HOH HOH A . I 4 HOH 73 2073 2073 HOH HOH A . I 4 HOH 74 2074 2074 HOH HOH A . I 4 HOH 75 2075 2075 HOH HOH A . I 4 HOH 76 2076 2076 HOH HOH A . I 4 HOH 77 2077 2077 HOH HOH A . I 4 HOH 78 2078 2078 HOH HOH A . I 4 HOH 79 2079 2079 HOH HOH A . I 4 HOH 80 2080 2080 HOH HOH A . I 4 HOH 81 2081 2081 HOH HOH A . J 4 HOH 1 2001 2001 HOH HOH B . J 4 HOH 2 2002 2002 HOH HOH B . J 4 HOH 3 2003 2003 HOH HOH B . J 4 HOH 4 2004 2004 HOH HOH B . J 4 HOH 5 2005 2005 HOH HOH B . J 4 HOH 6 2006 2006 HOH HOH B . J 4 HOH 7 2007 2007 HOH HOH B . J 4 HOH 8 2008 2008 HOH HOH B . J 4 HOH 9 2009 2009 HOH HOH B . J 4 HOH 10 2010 2010 HOH HOH B . J 4 HOH 11 2011 2011 HOH HOH B . J 4 HOH 12 2012 2012 HOH HOH B . J 4 HOH 13 2013 2013 HOH HOH B . J 4 HOH 14 2014 2014 HOH HOH B . J 4 HOH 15 2015 2015 HOH HOH B . J 4 HOH 16 2016 2016 HOH HOH B . J 4 HOH 17 2017 2017 HOH HOH B . J 4 HOH 18 2018 2018 HOH HOH B . J 4 HOH 19 2019 2019 HOH HOH B . J 4 HOH 20 2020 2020 HOH HOH B . J 4 HOH 21 2021 2021 HOH HOH B . J 4 HOH 22 2022 2022 HOH HOH B . J 4 HOH 23 2023 2023 HOH HOH B . J 4 HOH 24 2024 2024 HOH HOH B . J 4 HOH 25 2025 2025 HOH HOH B . J 4 HOH 26 2026 2026 HOH HOH B . J 4 HOH 27 2027 2027 HOH HOH B . J 4 HOH 28 2028 2028 HOH HOH B . J 4 HOH 29 2029 2029 HOH HOH B . J 4 HOH 30 2030 2030 HOH HOH B . J 4 HOH 31 2031 2031 HOH HOH B . J 4 HOH 32 2032 2032 HOH HOH B . J 4 HOH 33 2033 2033 HOH HOH B . J 4 HOH 34 2034 2034 HOH HOH B . J 4 HOH 35 2035 2035 HOH HOH B . J 4 HOH 36 2036 2036 HOH HOH B . J 4 HOH 37 2037 2037 HOH HOH B . J 4 HOH 38 2038 2038 HOH HOH B . J 4 HOH 39 2039 2039 HOH HOH B . J 4 HOH 40 2040 2040 HOH HOH B . J 4 HOH 41 2041 2041 HOH HOH B . J 4 HOH 42 2042 2042 HOH HOH B . J 4 HOH 43 2043 2043 HOH HOH B . J 4 HOH 44 2044 2044 HOH HOH B . J 4 HOH 45 2045 2045 HOH HOH B . J 4 HOH 46 2046 2046 HOH HOH B . J 4 HOH 47 2047 2047 HOH HOH B . J 4 HOH 48 2048 2048 HOH HOH B . J 4 HOH 49 2049 2049 HOH HOH B . J 4 HOH 50 2050 2050 HOH HOH B . J 4 HOH 51 2051 2051 HOH HOH B . J 4 HOH 52 2052 2052 HOH HOH B . J 4 HOH 53 2053 2053 HOH HOH B . J 4 HOH 54 2054 2054 HOH HOH B . J 4 HOH 55 2055 2055 HOH HOH B . J 4 HOH 56 2056 2056 HOH HOH B . J 4 HOH 57 2057 2057 HOH HOH B . J 4 HOH 58 2058 2058 HOH HOH B . J 4 HOH 59 2059 2059 HOH HOH B . J 4 HOH 60 2060 2060 HOH HOH B . J 4 HOH 61 2061 2061 HOH HOH B . J 4 HOH 62 2062 2062 HOH HOH B . J 4 HOH 63 2063 2063 HOH HOH B . J 4 HOH 64 2064 2064 HOH HOH B . J 4 HOH 65 2065 2065 HOH HOH B . J 4 HOH 66 2066 2066 HOH HOH B . J 4 HOH 67 2067 2067 HOH HOH B . J 4 HOH 68 2068 2068 HOH HOH B . J 4 HOH 69 2069 2069 HOH HOH B . J 4 HOH 70 2070 2070 HOH HOH B . J 4 HOH 71 2071 2071 HOH HOH B . J 4 HOH 72 2072 2072 HOH HOH B . J 4 HOH 73 2073 2073 HOH HOH B . J 4 HOH 74 2074 2074 HOH HOH B . K 4 HOH 1 2001 2001 HOH HOH D . K 4 HOH 2 2002 2002 HOH HOH D . K 4 HOH 3 2003 2003 HOH HOH D . K 4 HOH 4 2004 2004 HOH HOH D . K 4 HOH 5 2005 2005 HOH HOH D . K 4 HOH 6 2006 2006 HOH HOH D . K 4 HOH 7 2007 2007 HOH HOH D . K 4 HOH 8 2008 2008 HOH HOH D . K 4 HOH 9 2009 2009 HOH HOH D . K 4 HOH 10 2010 2010 HOH HOH D . K 4 HOH 11 2011 2011 HOH HOH D . K 4 HOH 12 2012 2012 HOH HOH D . L 4 HOH 1 2001 2001 HOH HOH E . L 4 HOH 2 2002 2002 HOH HOH E . L 4 HOH 3 2003 2003 HOH HOH E . L 4 HOH 4 2004 2004 HOH HOH E . L 4 HOH 5 2005 2005 HOH HOH E . L 4 HOH 6 2006 2006 HOH HOH E . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 C NMM 2 D NMM 2 ? ARG ? 2 C M3L 4 D M3L 4 ? LYS N-TRIMETHYLLYSINE 3 D NMM 2 E NMM 2 ? ARG ? 4 D M3L 4 E M3L 4 ? LYS N-TRIMETHYLLYSINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E,F,I,K 2 1 B,D,G,H,J,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1340 ? 1 MORE -7.43 ? 1 'SSA (A^2)' 5860 ? 2 'ABSA (A^2)' 1140 ? 2 MORE -8.28 ? 2 'SSA (A^2)' 6300 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 14 ? A CYS 419 ? 1_555 ZN ? E ZN . ? A ZN 1488 ? 1_555 SG ? A CYS 18 ? A CYS 423 ? 1_555 114.3 ? 2 SG ? A CYS 14 ? A CYS 419 ? 1_555 ZN ? E ZN . ? A ZN 1488 ? 1_555 ND1 ? A HIS 50 ? A HIS 455 ? 1_555 106.5 ? 3 SG ? A CYS 18 ? A CYS 423 ? 1_555 ZN ? E ZN . ? A ZN 1488 ? 1_555 ND1 ? A HIS 50 ? A HIS 455 ? 1_555 102.1 ? 4 SG ? A CYS 14 ? A CYS 419 ? 1_555 ZN ? E ZN . ? A ZN 1488 ? 1_555 SG ? A CYS 53 ? A CYS 458 ? 1_555 110.6 ? 5 SG ? A CYS 18 ? A CYS 423 ? 1_555 ZN ? E ZN . ? A ZN 1488 ? 1_555 SG ? A CYS 53 ? A CYS 458 ? 1_555 107.0 ? 6 ND1 ? A HIS 50 ? A HIS 455 ? 1_555 ZN ? E ZN . ? A ZN 1488 ? 1_555 SG ? A CYS 53 ? A CYS 458 ? 1_555 116.3 ? 7 SG ? A CYS 41 ? A CYS 446 ? 1_555 ZN ? F ZN . ? A ZN 1489 ? 1_555 NE2 ? A HIS 47 ? A HIS 452 ? 1_555 105.6 ? 8 SG ? A CYS 41 ? A CYS 446 ? 1_555 ZN ? F ZN . ? A ZN 1489 ? 1_555 SG ? A CYS 73 ? A CYS 478 ? 1_555 115.9 ? 9 NE2 ? A HIS 47 ? A HIS 452 ? 1_555 ZN ? F ZN . ? A ZN 1489 ? 1_555 SG ? A CYS 73 ? A CYS 478 ? 1_555 114.9 ? 10 SG ? A CYS 41 ? A CYS 446 ? 1_555 ZN ? F ZN . ? A ZN 1489 ? 1_555 ND1 ? A HIS 76 ? A HIS 481 ? 1_555 119.8 ? 11 NE2 ? A HIS 47 ? A HIS 452 ? 1_555 ZN ? F ZN . ? A ZN 1489 ? 1_555 ND1 ? A HIS 76 ? A HIS 481 ? 1_555 98.6 ? 12 SG ? A CYS 73 ? A CYS 478 ? 1_555 ZN ? F ZN . ? A ZN 1489 ? 1_555 ND1 ? A HIS 76 ? A HIS 481 ? 1_555 101.2 ? 13 SG ? B CYS 14 ? B CYS 419 ? 1_555 ZN ? G ZN . ? B ZN 1487 ? 1_555 SG ? B CYS 18 ? B CYS 423 ? 1_555 113.5 ? 14 SG ? B CYS 14 ? B CYS 419 ? 1_555 ZN ? G ZN . ? B ZN 1487 ? 1_555 ND1 ? B HIS 50 ? B HIS 455 ? 1_555 104.7 ? 15 SG ? B CYS 18 ? B CYS 423 ? 1_555 ZN ? G ZN . ? B ZN 1487 ? 1_555 ND1 ? B HIS 50 ? B HIS 455 ? 1_555 105.7 ? 16 SG ? B CYS 14 ? B CYS 419 ? 1_555 ZN ? G ZN . ? B ZN 1487 ? 1_555 SG ? B CYS 53 ? B CYS 458 ? 1_555 110.2 ? 17 SG ? B CYS 18 ? B CYS 423 ? 1_555 ZN ? G ZN . ? B ZN 1487 ? 1_555 SG ? B CYS 53 ? B CYS 458 ? 1_555 111.8 ? 18 ND1 ? B HIS 50 ? B HIS 455 ? 1_555 ZN ? G ZN . ? B ZN 1487 ? 1_555 SG ? B CYS 53 ? B CYS 458 ? 1_555 110.5 ? 19 SG ? B CYS 41 ? B CYS 446 ? 1_555 ZN ? H ZN . ? B ZN 1488 ? 1_555 NE2 ? B HIS 47 ? B HIS 452 ? 1_555 108.5 ? 20 SG ? B CYS 41 ? B CYS 446 ? 1_555 ZN ? H ZN . ? B ZN 1488 ? 1_555 SG ? B CYS 73 ? B CYS 478 ? 1_555 115.0 ? 21 NE2 ? B HIS 47 ? B HIS 452 ? 1_555 ZN ? H ZN . ? B ZN 1488 ? 1_555 SG ? B CYS 73 ? B CYS 478 ? 1_555 114.1 ? 22 SG ? B CYS 41 ? B CYS 446 ? 1_555 ZN ? H ZN . ? B ZN 1488 ? 1_555 ND1 ? B HIS 76 ? B HIS 481 ? 1_555 123.8 ? 23 NE2 ? B HIS 47 ? B HIS 452 ? 1_555 ZN ? H ZN . ? B ZN 1488 ? 1_555 ND1 ? B HIS 76 ? B HIS 481 ? 1_555 96.4 ? 24 SG ? B CYS 73 ? B CYS 478 ? 1_555 ZN ? H ZN . ? B ZN 1488 ? 1_555 ND1 ? B HIS 76 ? B HIS 481 ? 1_555 97.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-12-11 2 'Structure model' 1 1 2016-12-21 3 'Structure model' 1 2 2019-05-08 4 'Structure model' 1 3 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Refinement description' 4 2 'Structure model' 'Source and taxonomy' 5 2 'Structure model' 'Version format compliance' 6 3 'Structure model' 'Data collection' 7 3 'Structure model' 'Derived calculations' 8 3 'Structure model' 'Experimental preparation' 9 3 'Structure model' Other 10 4 'Structure model' 'Data collection' 11 4 'Structure model' 'Database references' 12 4 'Structure model' 'Derived calculations' 13 4 'Structure model' Other 14 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_PDB_rev 2 3 'Structure model' database_PDB_rev_record 3 3 'Structure model' exptl_crystal_grow 4 3 'Structure model' pdbx_database_proc 5 3 'Structure model' pdbx_database_status 6 3 'Structure model' struct_conn 7 4 'Structure model' chem_comp_atom 8 4 'Structure model' chem_comp_bond 9 4 'Structure model' database_2 10 4 'Structure model' pdbx_database_status 11 4 'Structure model' pdbx_initial_refinement_model 12 4 'Structure model' pdbx_struct_conn_angle 13 4 'Structure model' struct_conn 14 4 'Structure model' struct_conn_type 15 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_exptl_crystal_grow.method' 2 3 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_database_2.pdbx_DOI' 5 4 'Structure model' '_database_2.pdbx_database_accession' 6 4 'Structure model' '_pdbx_database_status.status_code_sf' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.value' 18 4 'Structure model' '_struct_conn.conn_type_id' 19 4 'Structure model' '_struct_conn.id' 20 4 'Structure model' '_struct_conn.pdbx_dist_value' 21 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 4 'Structure model' '_struct_conn_type.id' 37 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 38 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 39 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 2V85 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;N-TERMINAL SEGMENT GPLGSPEFG ARE CARRIED OVER FROM THE EXPRESSION VECTOR AFTER PROTEASE CLEAVAGE ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A ARG 486 ? ? C A ARG 486 ? ? N A ALA 487 ? ? 98.69 117.20 -18.51 2.20 Y 2 1 C A ARG 486 ? ? N A ALA 487 ? ? CA A ALA 487 ? ? 138.35 121.70 16.65 2.50 Y 3 1 N A ALA 487 ? ? CA A ALA 487 ? ? C A ALA 487 ? ? 133.46 111.00 22.46 2.70 N 4 1 N D GLY 12 ? ? CA D GLY 12 ? ? C D GLY 12 ? ? 95.24 113.10 -17.86 2.50 N 5 1 N E LYS 9 ? ? CA E LYS 9 ? ? C E LYS 9 ? ? 127.57 111.00 16.57 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 433 ? ? -126.74 -53.24 2 1 LEU A 438 ? ? -136.68 -68.01 3 1 GLU B 412 ? ? -67.19 10.50 4 1 LEU B 438 ? ? -126.33 -78.46 5 1 ALA D 11 ? ? 149.71 77.81 6 1 LYS E 9 ? ? -20.96 -38.92 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id PHE _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 413 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.113 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B GLU 412 ? CG ? B GLU 7 CG 2 1 Y 1 B GLU 412 ? CD ? B GLU 7 CD 3 1 Y 1 B GLU 412 ? OE1 ? B GLU 7 OE1 4 1 Y 1 B GLU 412 ? OE2 ? B GLU 7 OE2 5 1 Y 1 B ALA 487 ? CA ? B ALA 82 CA 6 1 Y 1 B ALA 487 ? C ? B ALA 82 C 7 1 Y 1 B ALA 487 ? O ? B ALA 82 O 8 1 Y 1 B ALA 487 ? CB ? B ALA 82 CB 9 1 Y 1 E ARG 8 ? CG ? D ARG 8 CG 10 1 Y 1 E ARG 8 ? CD ? D ARG 8 CD 11 1 Y 1 E ARG 8 ? NE ? D ARG 8 NE 12 1 Y 1 E ARG 8 ? CZ ? D ARG 8 CZ 13 1 Y 1 E ARG 8 ? NH1 ? D ARG 8 NH1 14 1 Y 1 E ARG 8 ? NH2 ? D ARG 8 NH2 15 1 Y 1 E LYS 9 ? CG ? D LYS 9 CG 16 1 Y 1 E LYS 9 ? CD ? D LYS 9 CD 17 1 Y 1 E LYS 9 ? CE ? D LYS 9 CE 18 1 Y 1 E LYS 9 ? NZ ? D LYS 9 NZ 19 1 Y 1 E ALA 10 ? CA ? D ALA 10 CA 20 1 Y 1 E ALA 10 ? C ? D ALA 10 C 21 1 Y 1 E ALA 10 ? O ? D ALA 10 O 22 1 Y 1 E ALA 10 ? CB ? D ALA 10 CB # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 406 ? A GLY 1 2 1 Y 1 A PRO 407 ? A PRO 2 3 1 Y 1 A LEU 408 ? A LEU 3 4 1 Y 1 A GLY 409 ? A GLY 4 5 1 Y 1 A SER 410 ? A SER 5 6 1 Y 1 A PRO 411 ? A PRO 6 7 1 Y 1 A GLU 412 ? A GLU 7 8 1 Y 1 A PHE 413 ? A PHE 8 9 1 Y 1 E ALA 11 ? D ALA 11 10 1 Y 1 E GLY 12 ? D GLY 12 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 M3L N N N N 230 M3L CA C N S 231 M3L CB C N N 232 M3L CG C N N 233 M3L CD C N N 234 M3L CE C N N 235 M3L NZ N N N 236 M3L C C N N 237 M3L O O N N 238 M3L OXT O N N 239 M3L CM1 C N N 240 M3L CM2 C N N 241 M3L CM3 C N N 242 M3L H H N N 243 M3L H2 H N N 244 M3L HA H N N 245 M3L HB2 H N N 246 M3L HB3 H N N 247 M3L HG2 H N N 248 M3L HG3 H N N 249 M3L HD2 H N N 250 M3L HD3 H N N 251 M3L HE2 H N N 252 M3L HE3 H N N 253 M3L HXT H N N 254 M3L HM11 H N N 255 M3L HM12 H N N 256 M3L HM13 H N N 257 M3L HM21 H N N 258 M3L HM22 H N N 259 M3L HM23 H N N 260 M3L HM31 H N N 261 M3L HM32 H N N 262 M3L HM33 H N N 263 MET N N N N 264 MET CA C N S 265 MET C C N N 266 MET O O N N 267 MET CB C N N 268 MET CG C N N 269 MET SD S N N 270 MET CE C N N 271 MET OXT O N N 272 MET H H N N 273 MET H2 H N N 274 MET HA H N N 275 MET HB2 H N N 276 MET HB3 H N N 277 MET HG2 H N N 278 MET HG3 H N N 279 MET HE1 H N N 280 MET HE2 H N N 281 MET HE3 H N N 282 MET HXT H N N 283 NMM CAA C N N 284 NMM NH2 N N N 285 NMM CZ C N N 286 NMM NH1 N N N 287 NMM NE N N N 288 NMM CD C N N 289 NMM CG C N N 290 NMM CB C N N 291 NMM CA C N S 292 NMM C C N N 293 NMM O O N N 294 NMM OXT O N N 295 NMM N N N N 296 NMM HAA1 H N N 297 NMM HAA2 H N N 298 NMM HAA3 H N N 299 NMM HH2 H N N 300 NMM HH1 H N N 301 NMM HE H N N 302 NMM HD3 H N N 303 NMM HD2 H N N 304 NMM HG3 H N N 305 NMM HG2 H N N 306 NMM HB3 H N N 307 NMM HB2 H N N 308 NMM HA H N N 309 NMM HXT H N N 310 NMM H H N N 311 NMM H2 H N N 312 PHE N N N N 313 PHE CA C N S 314 PHE C C N N 315 PHE O O N N 316 PHE CB C N N 317 PHE CG C Y N 318 PHE CD1 C Y N 319 PHE CD2 C Y N 320 PHE CE1 C Y N 321 PHE CE2 C Y N 322 PHE CZ C Y N 323 PHE OXT O N N 324 PHE H H N N 325 PHE H2 H N N 326 PHE HA H N N 327 PHE HB2 H N N 328 PHE HB3 H N N 329 PHE HD1 H N N 330 PHE HD2 H N N 331 PHE HE1 H N N 332 PHE HE2 H N N 333 PHE HZ H N N 334 PHE HXT H N N 335 PRO N N N N 336 PRO CA C N S 337 PRO C C N N 338 PRO O O N N 339 PRO CB C N N 340 PRO CG C N N 341 PRO CD C N N 342 PRO OXT O N N 343 PRO H H N N 344 PRO HA H N N 345 PRO HB2 H N N 346 PRO HB3 H N N 347 PRO HG2 H N N 348 PRO HG3 H N N 349 PRO HD2 H N N 350 PRO HD3 H N N 351 PRO HXT H N N 352 SER N N N N 353 SER CA C N S 354 SER C C N N 355 SER O O N N 356 SER CB C N N 357 SER OG O N N 358 SER OXT O N N 359 SER H H N N 360 SER H2 H N N 361 SER HA H N N 362 SER HB2 H N N 363 SER HB3 H N N 364 SER HG H N N 365 SER HXT H N N 366 THR N N N N 367 THR CA C N S 368 THR C C N N 369 THR O O N N 370 THR CB C N R 371 THR OG1 O N N 372 THR CG2 C N N 373 THR OXT O N N 374 THR H H N N 375 THR H2 H N N 376 THR HA H N N 377 THR HB H N N 378 THR HG1 H N N 379 THR HG21 H N N 380 THR HG22 H N N 381 THR HG23 H N N 382 THR HXT H N N 383 TRP N N N N 384 TRP CA C N S 385 TRP C C N N 386 TRP O O N N 387 TRP CB C N N 388 TRP CG C Y N 389 TRP CD1 C Y N 390 TRP CD2 C Y N 391 TRP NE1 N Y N 392 TRP CE2 C Y N 393 TRP CE3 C Y N 394 TRP CZ2 C Y N 395 TRP CZ3 C Y N 396 TRP CH2 C Y N 397 TRP OXT O N N 398 TRP H H N N 399 TRP H2 H N N 400 TRP HA H N N 401 TRP HB2 H N N 402 TRP HB3 H N N 403 TRP HD1 H N N 404 TRP HE1 H N N 405 TRP HE3 H N N 406 TRP HZ2 H N N 407 TRP HZ3 H N N 408 TRP HH2 H N N 409 TRP HXT H N N 410 TYR N N N N 411 TYR CA C N S 412 TYR C C N N 413 TYR O O N N 414 TYR CB C N N 415 TYR CG C Y N 416 TYR CD1 C Y N 417 TYR CD2 C Y N 418 TYR CE1 C Y N 419 TYR CE2 C Y N 420 TYR CZ C Y N 421 TYR OH O N N 422 TYR OXT O N N 423 TYR H H N N 424 TYR H2 H N N 425 TYR HA H N N 426 TYR HB2 H N N 427 TYR HB3 H N N 428 TYR HD1 H N N 429 TYR HD2 H N N 430 TYR HE1 H N N 431 TYR HE2 H N N 432 TYR HH H N N 433 TYR HXT H N N 434 VAL N N N N 435 VAL CA C N S 436 VAL C C N N 437 VAL O O N N 438 VAL CB C N N 439 VAL CG1 C N N 440 VAL CG2 C N N 441 VAL OXT O N N 442 VAL H H N N 443 VAL H2 H N N 444 VAL HA H N N 445 VAL HB H N N 446 VAL HG11 H N N 447 VAL HG12 H N N 448 VAL HG13 H N N 449 VAL HG21 H N N 450 VAL HG22 H N N 451 VAL HG23 H N N 452 VAL HXT H N N 453 ZN ZN ZN N N 454 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 M3L N CA sing N N 218 M3L N H sing N N 219 M3L N H2 sing N N 220 M3L CA CB sing N N 221 M3L CA C sing N N 222 M3L CA HA sing N N 223 M3L CB CG sing N N 224 M3L CB HB2 sing N N 225 M3L CB HB3 sing N N 226 M3L CG CD sing N N 227 M3L CG HG2 sing N N 228 M3L CG HG3 sing N N 229 M3L CD CE sing N N 230 M3L CD HD2 sing N N 231 M3L CD HD3 sing N N 232 M3L CE NZ sing N N 233 M3L CE HE2 sing N N 234 M3L CE HE3 sing N N 235 M3L NZ CM1 sing N N 236 M3L NZ CM2 sing N N 237 M3L NZ CM3 sing N N 238 M3L C O doub N N 239 M3L C OXT sing N N 240 M3L OXT HXT sing N N 241 M3L CM1 HM11 sing N N 242 M3L CM1 HM12 sing N N 243 M3L CM1 HM13 sing N N 244 M3L CM2 HM21 sing N N 245 M3L CM2 HM22 sing N N 246 M3L CM2 HM23 sing N N 247 M3L CM3 HM31 sing N N 248 M3L CM3 HM32 sing N N 249 M3L CM3 HM33 sing N N 250 MET N CA sing N N 251 MET N H sing N N 252 MET N H2 sing N N 253 MET CA C sing N N 254 MET CA CB sing N N 255 MET CA HA sing N N 256 MET C O doub N N 257 MET C OXT sing N N 258 MET CB CG sing N N 259 MET CB HB2 sing N N 260 MET CB HB3 sing N N 261 MET CG SD sing N N 262 MET CG HG2 sing N N 263 MET CG HG3 sing N N 264 MET SD CE sing N N 265 MET CE HE1 sing N N 266 MET CE HE2 sing N N 267 MET CE HE3 sing N N 268 MET OXT HXT sing N N 269 NMM CAA NH2 sing N N 270 NMM CAA HAA1 sing N N 271 NMM CAA HAA2 sing N N 272 NMM CAA HAA3 sing N N 273 NMM NH2 CZ sing N N 274 NMM NH2 HH2 sing N N 275 NMM CZ NH1 doub N N 276 NMM CZ NE sing N N 277 NMM NH1 HH1 sing N N 278 NMM NE CD sing N N 279 NMM NE HE sing N N 280 NMM CD CG sing N N 281 NMM CD HD3 sing N N 282 NMM CD HD2 sing N N 283 NMM CG CB sing N N 284 NMM CG HG3 sing N N 285 NMM CG HG2 sing N N 286 NMM CB CA sing N N 287 NMM CB HB3 sing N N 288 NMM CB HB2 sing N N 289 NMM CA C sing N N 290 NMM CA N sing N N 291 NMM CA HA sing N N 292 NMM C O doub N N 293 NMM C OXT sing N N 294 NMM OXT HXT sing N N 295 NMM N H sing N N 296 NMM N H2 sing N N 297 PHE N CA sing N N 298 PHE N H sing N N 299 PHE N H2 sing N N 300 PHE CA C sing N N 301 PHE CA CB sing N N 302 PHE CA HA sing N N 303 PHE C O doub N N 304 PHE C OXT sing N N 305 PHE CB CG sing N N 306 PHE CB HB2 sing N N 307 PHE CB HB3 sing N N 308 PHE CG CD1 doub Y N 309 PHE CG CD2 sing Y N 310 PHE CD1 CE1 sing Y N 311 PHE CD1 HD1 sing N N 312 PHE CD2 CE2 doub Y N 313 PHE CD2 HD2 sing N N 314 PHE CE1 CZ doub Y N 315 PHE CE1 HE1 sing N N 316 PHE CE2 CZ sing Y N 317 PHE CE2 HE2 sing N N 318 PHE CZ HZ sing N N 319 PHE OXT HXT sing N N 320 PRO N CA sing N N 321 PRO N CD sing N N 322 PRO N H sing N N 323 PRO CA C sing N N 324 PRO CA CB sing N N 325 PRO CA HA sing N N 326 PRO C O doub N N 327 PRO C OXT sing N N 328 PRO CB CG sing N N 329 PRO CB HB2 sing N N 330 PRO CB HB3 sing N N 331 PRO CG CD sing N N 332 PRO CG HG2 sing N N 333 PRO CG HG3 sing N N 334 PRO CD HD2 sing N N 335 PRO CD HD3 sing N N 336 PRO OXT HXT sing N N 337 SER N CA sing N N 338 SER N H sing N N 339 SER N H2 sing N N 340 SER CA C sing N N 341 SER CA CB sing N N 342 SER CA HA sing N N 343 SER C O doub N N 344 SER C OXT sing N N 345 SER CB OG sing N N 346 SER CB HB2 sing N N 347 SER CB HB3 sing N N 348 SER OG HG sing N N 349 SER OXT HXT sing N N 350 THR N CA sing N N 351 THR N H sing N N 352 THR N H2 sing N N 353 THR CA C sing N N 354 THR CA CB sing N N 355 THR CA HA sing N N 356 THR C O doub N N 357 THR C OXT sing N N 358 THR CB OG1 sing N N 359 THR CB CG2 sing N N 360 THR CB HB sing N N 361 THR OG1 HG1 sing N N 362 THR CG2 HG21 sing N N 363 THR CG2 HG22 sing N N 364 THR CG2 HG23 sing N N 365 THR OXT HXT sing N N 366 TRP N CA sing N N 367 TRP N H sing N N 368 TRP N H2 sing N N 369 TRP CA C sing N N 370 TRP CA CB sing N N 371 TRP CA HA sing N N 372 TRP C O doub N N 373 TRP C OXT sing N N 374 TRP CB CG sing N N 375 TRP CB HB2 sing N N 376 TRP CB HB3 sing N N 377 TRP CG CD1 doub Y N 378 TRP CG CD2 sing Y N 379 TRP CD1 NE1 sing Y N 380 TRP CD1 HD1 sing N N 381 TRP CD2 CE2 doub Y N 382 TRP CD2 CE3 sing Y N 383 TRP NE1 CE2 sing Y N 384 TRP NE1 HE1 sing N N 385 TRP CE2 CZ2 sing Y N 386 TRP CE3 CZ3 doub Y N 387 TRP CE3 HE3 sing N N 388 TRP CZ2 CH2 doub Y N 389 TRP CZ2 HZ2 sing N N 390 TRP CZ3 CH2 sing Y N 391 TRP CZ3 HZ3 sing N N 392 TRP CH2 HH2 sing N N 393 TRP OXT HXT sing N N 394 TYR N CA sing N N 395 TYR N H sing N N 396 TYR N H2 sing N N 397 TYR CA C sing N N 398 TYR CA CB sing N N 399 TYR CA HA sing N N 400 TYR C O doub N N 401 TYR C OXT sing N N 402 TYR CB CG sing N N 403 TYR CB HB2 sing N N 404 TYR CB HB3 sing N N 405 TYR CG CD1 doub Y N 406 TYR CG CD2 sing Y N 407 TYR CD1 CE1 sing Y N 408 TYR CD1 HD1 sing N N 409 TYR CD2 CE2 doub Y N 410 TYR CD2 HD2 sing N N 411 TYR CE1 CZ doub Y N 412 TYR CE1 HE1 sing N N 413 TYR CE2 CZ sing Y N 414 TYR CE2 HE2 sing N N 415 TYR CZ OH sing N N 416 TYR OH HH sing N N 417 TYR OXT HXT sing N N 418 VAL N CA sing N N 419 VAL N H sing N N 420 VAL N H2 sing N N 421 VAL CA C sing N N 422 VAL CA CB sing N N 423 VAL CA HA sing N N 424 VAL C O doub N N 425 VAL C OXT sing N N 426 VAL CB CG1 sing N N 427 VAL CB CG2 sing N N 428 VAL CB HB sing N N 429 VAL CG1 HG11 sing N N 430 VAL CG1 HG12 sing N N 431 VAL CG1 HG13 sing N N 432 VAL CG2 HG21 sing N N 433 VAL CG2 HG22 sing N N 434 VAL CG2 HG23 sing N N 435 VAL OXT HXT sing N N 436 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2V83 _pdbx_initial_refinement_model.details 'PDB ENTRY 2V83' #