HEADER TRANSFERASE 13-AUG-07 2V8P TITLE ISPE IN COMPLEX WITH ADP AND CDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CMK, 4-(CYTIDINE-5'-DIPHOSPHO)-2-C-METHYL-D-ERYTHRITOL COMPND 5 KINASE; COMPND 6 EC: 2.7.1.148; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS 4-DIPHOSPHOCYTIDYL-2C-METHYL-D- ERYTHRITOL, AQUIFEX AEOLICUS, KEYWDS 2 NUCLEOTIDE-BINDING, ISOPRENE BIOSYNTHESIS, KINASE, TRANSFERASE, ATP- KEYWDS 3 BINDING, NON-MEVALONATE EXPDTA X-RAY DIFFRACTION AUTHOR T.SGRAJA,M.S.ALPHEY,W.N.HUNTER REVDAT 4 08-MAY-24 2V8P 1 REMARK REVDAT 3 24-FEB-09 2V8P 1 VERSN REVDAT 2 29-APR-08 2V8P 1 JRNL ATOM REVDAT 1 21-AUG-07 2V8P 0 SPRSDE 21-AUG-07 2V8P 2V2Y JRNL AUTH T.SGRAJA,M.S.ALPHEY,S.GHILAGABER,R.MARQUEZ,M.N.ROBERTSON, JRNL AUTH 2 J.L.HEMMINGS,S.LAUW,F.ROHDICH,A.BACHER,W.EISENREICH, JRNL AUTH 3 V.ILLARIONOVA,W.N.HUNTER JRNL TITL CHARACTERIZATION OF AQUIFEX AEOLICUS JRNL TITL 2 4-DIPHOSPHOCYTIDYL-2C-METHYL-D-ERYTHRITOL KINASE -LIGAND JRNL TITL 3 RECOGNITION IN A TEMPLATE FOR ANTIMICROBIAL DRUG DISCOVERY. JRNL REF FEBS J. V. 275 2779 2008 JRNL REFN ISSN 1742-464X JRNL PMID 18422643 JRNL DOI 10.1111/J.1742-4658.2008.06418.X REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 47211 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2518 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3195 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 160 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4243 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 126 REMARK 3 SOLVENT ATOMS : 494 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.196 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.355 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4765 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6516 ; 1.186 ; 2.026 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 600 ; 5.346 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;33.869 ;24.190 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 841 ;14.536 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;14.756 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 710 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3604 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2180 ; 0.177 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3243 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 460 ; 0.128 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 84 ; 0.198 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.169 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2941 ; 0.482 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4626 ; 0.846 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2089 ; 1.023 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1883 ; 1.656 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2V8P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1290033453. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49729 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 39.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: STRUCTURE SOLVED USING MOLECULAR REPLACEMENT FROM A LOW REMARK 200 RESOLUTION SAD STRUCTURE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5, 0.2 M NACL AND 1.5 M REMARK 280 (NH4)2SO4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 68.52750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.52750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.52750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.52750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 68.52750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 68.52750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 68.52750 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 68.52750 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 68.52750 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 68.52750 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 68.52750 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 68.52750 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 68.52750 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 68.52750 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 68.52750 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 68.52750 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 68.52750 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 68.52750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 GLY B -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B -1 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 19 O HOH B 2025 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 78 69.09 -110.40 REMARK 500 LYS A 138 -128.34 59.59 REMARK 500 ASN A 206 109.32 -160.71 REMARK 500 SER A 238 32.91 -98.26 REMARK 500 ASN B 78 70.26 -110.90 REMARK 500 LYS B 138 -132.39 58.82 REMARK 500 ASN B 206 102.27 -169.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CDP A1269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A1270 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1271 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CDP B1269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B1270 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1271 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1273 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B1273 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V2V RELATED DB: PDB REMARK 900 ISPE IN COMPLEX WITH LIGAND REMARK 900 RELATED ID: 2V2Q RELATED DB: PDB REMARK 900 ISPE IN COMPLEX WITH LIGAND REMARK 900 RELATED ID: 2V2Z RELATED DB: PDB REMARK 900 ISPE IN COMPLEX WITH ADP AND CDPME REMARK 900 RELATED ID: 2V34 RELATED DB: PDB REMARK 900 ISPE IN COMPLEX WITH CYTIDINE AND LIGAND DBREF 2V8P A -2 0 PDB 2V8P 2V8P -2 0 DBREF 2V8P A 1 268 UNP O67060 ISPE_AQUAE 1 268 DBREF 2V8P B -2 0 PDB 2V8P 2V8P -2 0 DBREF 2V8P B 1 268 UNP O67060 ISPE_AQUAE 1 268 SEQRES 1 A 271 GLY SER HIS MET ILE LYS VAL LEU SER PRO ALA LYS ILE SEQRES 2 A 271 ASN LEU GLY LEU TRP VAL LEU GLY ARG LEU PRO SER GLY SEQRES 3 A 271 TYR HIS GLU ILE LEU THR LEU TYR GLN GLU ILE PRO PHE SEQRES 4 A 271 TYR ASP GLU ILE TYR ILE ARG GLU GLY VAL LEU ARG VAL SEQRES 5 A 271 GLU THR ASN ILE GLY ILE PRO GLN GLU GLU ASN LEU VAL SEQRES 6 A 271 TYR LYS GLY LEU ARG GLU PHE GLU ARG ILE THR GLY ILE SEQRES 7 A 271 GLU ILE ASN TYR SER ILE PHE ILE GLN LYS ASN ILE PRO SEQRES 8 A 271 PRO GLY ALA GLY LEU GLY GLY GLY SER SER ASN LEU ALA SEQRES 9 A 271 VAL VAL LEU LYS LYS VAL ASN GLU LEU LEU GLY SER PRO SEQRES 10 A 271 LEU SER GLU GLU GLU LEU ARG GLU LEU VAL GLY SER ILE SEQRES 11 A 271 SER ALA ASP ALA PRO PHE PHE LEU LEU GLY LYS SER ALA SEQRES 12 A 271 ILE GLY ARG GLY LYS GLY GLU VAL LEU GLU PRO VAL GLU SEQRES 13 A 271 THR GLU ILE SER GLY LYS ILE THR LEU VAL ILE PRO GLN SEQRES 14 A 271 VAL SER SER SER THR GLY ARG VAL TYR SER SER LEU ARG SEQRES 15 A 271 GLU GLU HIS PHE VAL THR PRO GLU TYR ALA GLU GLU LYS SEQRES 16 A 271 ILE GLN ARG ILE ILE SER GLY GLU VAL GLU GLU ILE GLU SEQRES 17 A 271 ASN VAL LEU GLY ASP ILE ALA ARG GLU LEU TYR PRO GLU SEQRES 18 A 271 ILE ASN GLU VAL TYR ARG PHE VAL GLU TYR LEU GLY PHE SEQRES 19 A 271 LYS PRO PHE VAL SER GLY SER GLY SER THR VAL TYR PHE SEQRES 20 A 271 PHE GLY GLY ALA SER GLU GLU LEU LYS LYS ALA ALA LYS SEQRES 21 A 271 MET ARG GLY TRP LYS VAL VAL GLU LEU GLU LEU SEQRES 1 B 271 GLY SER HIS MET ILE LYS VAL LEU SER PRO ALA LYS ILE SEQRES 2 B 271 ASN LEU GLY LEU TRP VAL LEU GLY ARG LEU PRO SER GLY SEQRES 3 B 271 TYR HIS GLU ILE LEU THR LEU TYR GLN GLU ILE PRO PHE SEQRES 4 B 271 TYR ASP GLU ILE TYR ILE ARG GLU GLY VAL LEU ARG VAL SEQRES 5 B 271 GLU THR ASN ILE GLY ILE PRO GLN GLU GLU ASN LEU VAL SEQRES 6 B 271 TYR LYS GLY LEU ARG GLU PHE GLU ARG ILE THR GLY ILE SEQRES 7 B 271 GLU ILE ASN TYR SER ILE PHE ILE GLN LYS ASN ILE PRO SEQRES 8 B 271 PRO GLY ALA GLY LEU GLY GLY GLY SER SER ASN LEU ALA SEQRES 9 B 271 VAL VAL LEU LYS LYS VAL ASN GLU LEU LEU GLY SER PRO SEQRES 10 B 271 LEU SER GLU GLU GLU LEU ARG GLU LEU VAL GLY SER ILE SEQRES 11 B 271 SER ALA ASP ALA PRO PHE PHE LEU LEU GLY LYS SER ALA SEQRES 12 B 271 ILE GLY ARG GLY LYS GLY GLU VAL LEU GLU PRO VAL GLU SEQRES 13 B 271 THR GLU ILE SER GLY LYS ILE THR LEU VAL ILE PRO GLN SEQRES 14 B 271 VAL SER SER SER THR GLY ARG VAL TYR SER SER LEU ARG SEQRES 15 B 271 GLU GLU HIS PHE VAL THR PRO GLU TYR ALA GLU GLU LYS SEQRES 16 B 271 ILE GLN ARG ILE ILE SER GLY GLU VAL GLU GLU ILE GLU SEQRES 17 B 271 ASN VAL LEU GLY ASP ILE ALA ARG GLU LEU TYR PRO GLU SEQRES 18 B 271 ILE ASN GLU VAL TYR ARG PHE VAL GLU TYR LEU GLY PHE SEQRES 19 B 271 LYS PRO PHE VAL SER GLY SER GLY SER THR VAL TYR PHE SEQRES 20 B 271 PHE GLY GLY ALA SER GLU GLU LEU LYS LYS ALA ALA LYS SEQRES 21 B 271 MET ARG GLY TRP LYS VAL VAL GLU LEU GLU LEU HET CDP A1269 25 HET ADP A1270 27 HET SO4 A1271 5 HET SO4 A1272 5 HET CL A1273 1 HET CDP B1269 50 HET ADP B1270 27 HET SO4 B1271 5 HET SO4 B1272 5 HET CL B1273 1 HETNAM CDP CYTIDINE-5'-DIPHOSPHATE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 3 CDP 2(C9 H15 N3 O11 P2) FORMUL 4 ADP 2(C10 H15 N5 O10 P2) FORMUL 5 SO4 4(O4 S 2-) FORMUL 7 CL 2(CL 1-) FORMUL 13 HOH *494(H2 O) HELIX 1 1 PRO A 56 GLU A 59 5 4 HELIX 2 1 ASN A 60 GLY A 74 1 15 HELIX 3 2 GLY A 94 LEU A 111 1 18 HELIX 4 3 SER A 116 SER A 128 1 13 HELIX 5 4 ALA A 131 LEU A 136 5 6 HELIX 6 5 SER A 170 SER A 177 1 8 HELIX 7 6 THR A 185 SER A 198 1 14 HELIX 8 7 GLU A 200 ILE A 204 5 5 HELIX 9 8 ASN A 206 TYR A 216 1 11 HELIX 10 10 TYR A 216 LEU A 229 1 14 HELIX 11 11 SER A 249 GLY A 260 1 12 HELIX 12 12 PRO B 56 GLU B 59 5 4 HELIX 13 13 ASN B 60 GLY B 74 1 15 HELIX 14 14 GLY B 94 LEU B 111 1 18 HELIX 15 15 SER B 116 SER B 128 1 13 HELIX 16 16 ALA B 131 LEU B 136 5 6 HELIX 17 17 SER B 170 SER B 176 1 7 HELIX 18 18 ARG B 179 PHE B 183 5 5 HELIX 19 19 THR B 185 SER B 198 1 14 HELIX 20 20 GLU B 200 ILE B 204 5 5 HELIX 21 21 ASN B 206 TYR B 216 1 11 HELIX 22 22 TYR B 216 LEU B 229 1 14 HELIX 23 23 SER B 249 GLY B 260 1 12 SHEET 1 AA 4 ILE A 2 ARG A 19 0 SHEET 2 AA 4 HIS A 25 GLU A 44 -1 O GLU A 26 N LEU A 17 SHEET 3 AA 4 SER A 139 ARG A 143 -1 O ALA A 140 N TYR A 31 SHEET 4 AA 4 VAL A 148 PRO A 151 -1 O VAL A 148 N ARG A 143 SHEET 1 AB 4 ILE A 2 ARG A 19 0 SHEET 2 AB 4 HIS A 25 GLU A 44 -1 O GLU A 26 N LEU A 17 SHEET 3 AB 4 TYR A 79 GLN A 84 -1 O SER A 80 N ARG A 43 SHEET 4 AB 4 ARG A 48 THR A 51 1 O ARG A 48 N ILE A 81 SHEET 1 AC 4 PHE A 234 VAL A 235 0 SHEET 2 AC 4 VAL A 242 PHE A 244 -1 O TYR A 243 N PHE A 234 SHEET 3 AC 4 GLY A 158 ILE A 164 -1 O THR A 161 N PHE A 244 SHEET 4 AC 4 LYS A 262 LEU A 268 -1 O LYS A 262 N ILE A 164 SHEET 1 BA 4 ILE B 2 ARG B 19 0 SHEET 2 BA 4 HIS B 25 GLU B 44 -1 O GLU B 26 N LEU B 17 SHEET 3 BA 4 SER B 139 ARG B 143 -1 O ALA B 140 N TYR B 31 SHEET 4 BA 4 VAL B 148 PRO B 151 -1 O VAL B 148 N ARG B 143 SHEET 1 BB 4 ILE B 2 ARG B 19 0 SHEET 2 BB 4 HIS B 25 GLU B 44 -1 O GLU B 26 N LEU B 17 SHEET 3 BB 4 TYR B 79 GLN B 84 -1 O SER B 80 N ARG B 43 SHEET 4 BB 4 ARG B 48 THR B 51 1 O ARG B 48 N ILE B 81 SHEET 1 BC 4 PHE B 234 VAL B 235 0 SHEET 2 BC 4 VAL B 242 PHE B 244 -1 O TYR B 243 N PHE B 234 SHEET 3 BC 4 LYS B 159 ILE B 164 -1 O THR B 161 N PHE B 244 SHEET 4 BC 4 LYS B 262 GLU B 267 -1 O LYS B 262 N ILE B 164 CISPEP 1 GLY A 239 SER A 240 0 8.14 CISPEP 2 GLY A 239 SER A 240 0 9.31 CISPEP 3 GLY B 239 SER B 240 0 9.89 SITE 1 AC1 7 TYR A 24 HIS A 25 GLY A 172 TYR A 175 SITE 2 AC1 7 HOH A2026 HOH A2204 HOH A2205 SITE 1 AC2 18 GLU A 59 ASN A 60 LEU A 61 LYS A 85 SITE 2 AC2 18 PRO A 89 GLY A 90 ALA A 91 GLY A 92 SITE 3 AC2 18 LEU A 93 GLY A 94 GLY A 95 GLY A 96 SITE 4 AC2 18 ASN A 99 HOH A2058 HOH A2208 HOH A2209 SITE 5 AC2 18 HOH A2210 HOH A2211 SITE 1 AC3 4 ARG A 213 TYR A 223 ARG A 224 HOH A2175 SITE 1 AC4 2 ASN A 52 GLN A 84 SITE 1 AC5 17 TYR B 24 HIS B 25 LEU B 61 SER B 97 SITE 2 AC5 17 ILE B 127 SER B 128 ALA B 129 LYS B 145 SITE 3 AC5 17 SER B 169 SER B 170 THR B 171 GLY B 172 SITE 4 AC5 17 TYR B 175 ADP B1270 HOH B2127 HOH B2277 SITE 5 AC5 17 HOH B2278 SITE 1 AC6 21 GLU B 59 ASN B 60 LEU B 61 LYS B 85 SITE 2 AC6 21 PRO B 88 PRO B 89 GLY B 90 ALA B 91 SITE 3 AC6 21 GLY B 92 LEU B 93 GLY B 94 GLY B 96 SITE 4 AC6 21 ASN B 99 THR B 171 CDP B1269 HOH B2125 SITE 5 AC6 21 HOH B2127 HOH B2168 HOH B2278 HOH B2279 SITE 6 AC6 21 HOH B2280 SITE 1 AC7 5 ARG B 213 TYR B 223 ARG B 224 HOH B2281 SITE 2 AC7 5 HOH B2282 SITE 1 AC8 5 ARG B 43 ARG B 48 ASN B 220 ARG B 224 SITE 2 AC8 5 HOH B2283 SITE 1 AC9 5 GLU A 205 ASN A 206 PHE A 234 VAL A 235 SITE 2 AC9 5 HOH A2159 SITE 1 BC1 4 ASN B 206 PHE B 234 VAL B 235 HOH B2213 CRYST1 137.055 137.055 137.055 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007296 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007296 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007296 0.00000 MTRIX1 1 -0.839396 -0.228470 0.493169 211.64200 1 MTRIX2 1 -0.248429 -0.645757 -0.721998 79.53800 1 MTRIX3 1 0.483422 -0.728560 0.485287 -30.75700 1