HEADER TRANSFERASE 20-AUG-07 2V92 TITLE CRYSTAL STRUCTURE OF THE REGULATORY FRAGMENT OF MAMMALIAN TITLE 2 AMPK IN COMPLEXES WITH ATP-AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC COMPND 3 SUBUNIT ALPHA-1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 396-548; COMPND 6 SYNONYM: AMPK ALPHA-1 CHAIN, AMP-ACTIVATED PROTEIN KINASE; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT GAMMA-1; COMPND 11 CHAIN: E; COMPND 12 SYNONYM: AMPK GAMMA-1 CHAIN, AMPKG, AMP-ACTIVATED PROTEIN COMPND 13 KINASE; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2; COMPND 17 CHAIN: B; COMPND 18 FRAGMENT: RESIDUES 187-272; COMPND 19 SYNONYM: AMPK BETA-2 CHAIN, AMP-ACTIVATED PROTEIN KINASE; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 9 ORGANISM_COMMON: RAT; SOURCE 10 ORGANISM_TAXID: 10116; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHORYLATION, NUCLEOTIDE-BINDING, KEYWDS 2 SERINE/THREONINE-PROTEIN KINASE, ATP-BINDING, KINASE, KEYWDS 3 MAGNESIUM, CBS DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.XIAO,R.HEATH,P.SAIU,F.C.LEIPER,P.LEONE,C.JING,P.A.WALKER, AUTHOR 2 L.HAIRE,J.F.ECCLESTON,C.T.DAVIS,S.R.MARTIN,D.CARLING, AUTHOR 3 S.J.GAMBLIN REVDAT 3 24-FEB-09 2V92 1 VERSN REVDAT 2 02-OCT-07 2V92 1 JRNL REVDAT 1 25-SEP-07 2V92 0 JRNL AUTH B.XIAO,R.HEATH,P.SAIU,F.C.LEIPER,P.LEONE,C.JING, JRNL AUTH 2 P.A.WALKER,L.HAIRE,J.F.ECCLESTON,C.T.DAVIS, JRNL AUTH 3 S.R.MARTIN,D.CARLING,S.J.GAMBLIN JRNL TITL STRUCTURAL BASIS FOR AMP BINDING TO MAMMALIAN AMP- JRNL TITL 2 ACTIVATED PROTEIN KINASE JRNL REF NATURE V. 449 496 2007 JRNL REFN ISSN 0028-0836 JRNL PMID 17851531 JRNL DOI 10.1038/NATURE06161 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 30415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3878 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 85 REMARK 3 SOLVENT ATOMS : 361 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2V92 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-AUG-07. REMARK 100 THE PDBE ID CODE IS EBI-33523. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30415 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.40 REMARK 200 RESOLUTION RANGE LOW (A) : 20.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.8 REMARK 200 R MERGE (I) : 0.10 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.80 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.48050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.62350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.51600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.62350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.48050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.51600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 392 REMARK 465 ILE A 470 REMARK 465 THR A 471 REMARK 465 GLU A 472 REMARK 465 ALA A 473 REMARK 465 LYS A 474 REMARK 465 SER A 475 REMARK 465 GLY A 476 REMARK 465 THR A 477 REMARK 465 ALA A 478 REMARK 465 THR A 479 REMARK 465 PRO A 480 REMARK 465 GLN A 481 REMARK 465 ARG A 482 REMARK 465 SER A 483 REMARK 465 GLY A 484 REMARK 465 SER A 485 REMARK 465 ILE A 486 REMARK 465 SER A 487 REMARK 465 ASN A 488 REMARK 465 TYR A 489 REMARK 465 ARG A 490 REMARK 465 SER A 491 REMARK 465 CYS A 492 REMARK 465 GLN A 493 REMARK 465 ARG A 494 REMARK 465 SER A 495 REMARK 465 ASP A 496 REMARK 465 SER A 497 REMARK 465 ASP A 498 REMARK 465 ALA A 499 REMARK 465 GLU A 500 REMARK 465 ALA A 501 REMARK 465 GLN A 502 REMARK 465 GLY A 503 REMARK 465 LYS A 504 REMARK 465 PRO A 505 REMARK 465 SER A 506 REMARK 465 GLU A 507 REMARK 465 VAL A 508 REMARK 465 SER A 509 REMARK 465 LEU A 510 REMARK 465 THR A 511 REMARK 465 SER A 512 REMARK 465 SER A 513 REMARK 465 VAL A 514 REMARK 465 THR A 515 REMARK 465 SER A 516 REMARK 465 LEU A 517 REMARK 465 ASP A 518 REMARK 465 SER A 519 REMARK 465 SER A 520 REMARK 465 PRO A 521 REMARK 465 VAL A 522 REMARK 465 ASP A 523 REMARK 465 MET B 186 REMARK 465 GLY B 187 REMARK 465 PRO B 188 REMARK 465 TYR B 189 REMARK 465 ILE B 223 REMARK 465 SER B 224 REMARK 465 CYS B 225 REMARK 465 ASP B 226 REMARK 465 PRO B 227 REMARK 465 ALA B 228 REMARK 465 LEU B 229 REMARK 465 LEU B 230 REMARK 465 PRO B 231 REMARK 465 GLU B 232 REMARK 465 MET E 1 REMARK 465 GLU E 2 REMARK 465 SER E 3 REMARK 465 VAL E 4 REMARK 465 ALA E 5 REMARK 465 ALA E 6 REMARK 465 GLU E 7 REMARK 465 SER E 8 REMARK 465 ALA E 9 REMARK 465 PRO E 10 REMARK 465 ALA E 11 REMARK 465 PRO E 12 REMARK 465 GLU E 13 REMARK 465 ASN E 14 REMARK 465 GLU E 15 REMARK 465 HIS E 16 REMARK 465 SER E 17 REMARK 465 GLN E 18 REMARK 465 GLU E 19 REMARK 465 THR E 20 REMARK 465 PRO E 21 REMARK 465 GLU E 22 REMARK 465 GLU E 327 REMARK 465 LYS E 328 REMARK 465 LYS E 329 REMARK 465 PRO E 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 203 CB CG CD CE NZ REMARK 470 SER B 204 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS E 176 - OG1 THR E 180 2.04 REMARK 500 O ILE E 179 - N GLU E 181 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU E 40 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 526 -60.23 -93.05 REMARK 500 ARG A 527 -149.73 56.91 REMARK 500 GLN B 191 130.03 69.32 REMARK 500 GLU B 199 161.66 58.49 REMARK 500 GLU B 200 -156.64 55.71 REMARK 500 ARG B 201 -54.39 58.15 REMARK 500 SER B 204 128.78 71.91 REMARK 500 LEU B 208 -71.77 -63.03 REMARK 500 HIS B 211 8.93 -155.22 REMARK 500 LYS B 219 -72.75 -73.95 REMARK 500 ASP B 220 16.91 53.60 REMARK 500 HIS B 235 -84.74 -71.59 REMARK 500 ASN B 239 -0.93 76.69 REMARK 500 LYS B 260 -104.25 45.59 REMARK 500 SER E 25 -29.51 71.17 REMARK 500 SER E 26 138.96 60.99 REMARK 500 ALA E 70 128.64 61.63 REMARK 500 LEU E 121 38.41 -79.55 REMARK 500 GLN E 122 -99.22 -49.86 REMARK 500 SER E 124 106.90 -47.06 REMARK 500 THR E 180 59.52 -45.32 REMARK 500 PRO E 183 99.23 -68.38 REMARK 500 ARG E 223 71.51 55.76 REMARK 500 TYR E 254 -0.38 59.97 REMARK 500 HIS E 267 7.38 -68.18 REMARK 500 HIS E 270 165.02 117.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 527 PRO A 528 -142.61 REMARK 500 PHE E 182 PRO E 183 134.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 PHE E 182 19.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE) REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP E1327 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP E1328 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP E1329 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V8Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE REGULATORY FRAGMENT REMARK 900 OF MAMMALIAN AMPK IN COMPLEXES WITH AMP REMARK 900 RELATED ID: 2F15 RELATED DB: PDB REMARK 900 GLYCOGEN-BINDING DOMAIN OF THE AMP-ACTIVATED REMARK 900 PROTEIN KINASEBETA2 SUBUNIT REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FIRST FOUR RESIDUES (GSMA) OF THE SEQUENCE OF CHAIN A REMARK 999 ARE GENERATED FROM THE POST HIS-TAG CLEAVAGE REMARK 999 THE FIRST RESIDUES (M) OF THE SEQUENCE OF CHAIN B IS REMARK 999 GENERATED BY THE WAY IT WAS CLONED INTO THE VECTOR DBREF 2V92 A 392 395 PDB 2V92 2V92 392 395 DBREF 2V92 A 396 548 UNP P54645 AAPK1_RAT 396 548 DBREF 2V92 E 1 330 UNP P80385 AAKG1_RAT 1 330 DBREF 2V92 B 186 186 PDB 2V92 2V92 186 186 DBREF 2V92 B 187 272 UNP O43741 AAKB2_HUMAN 187 272 SEQRES 1 A 157 GLY SER MET ALA TRP HIS LEU GLY ILE ARG SER GLN SER SEQRES 2 A 157 ARG PRO ASN ASP ILE MET ALA GLU VAL CYS ARG ALA ILE SEQRES 3 A 157 LYS GLN LEU ASP TYR GLU TRP LYS VAL VAL ASN PRO TYR SEQRES 4 A 157 TYR LEU ARG VAL ARG ARG LYS ASN PRO VAL THR SER THR SEQRES 5 A 157 PHE SER LYS MET SER LEU GLN LEU TYR GLN VAL ASP SER SEQRES 6 A 157 ARG THR TYR LEU LEU ASP PHE ARG SER ILE ASP ASP GLU SEQRES 7 A 157 ILE THR GLU ALA LYS SER GLY THR ALA THR PRO GLN ARG SEQRES 8 A 157 SER GLY SER ILE SER ASN TYR ARG SER CYS GLN ARG SER SEQRES 9 A 157 ASP SER ASP ALA GLU ALA GLN GLY LYS PRO SER GLU VAL SEQRES 10 A 157 SER LEU THR SER SER VAL THR SER LEU ASP SER SER PRO SEQRES 11 A 157 VAL ASP VAL ALA PRO ARG PRO GLY SER HIS THR ILE GLU SEQRES 12 A 157 PHE PHE GLU MET CYS ALA ASN LEU ILE LYS ILE LEU ALA SEQRES 13 A 157 GLN SEQRES 1 B 87 MET GLY PRO TYR GLY GLN GLU MET TYR ALA PHE ARG SER SEQRES 2 B 87 GLU GLU ARG PHE LYS SER PRO PRO ILE LEU PRO PRO HIS SEQRES 3 B 87 LEU LEU GLN VAL ILE LEU ASN LYS ASP THR ASN ILE SER SEQRES 4 B 87 CYS ASP PRO ALA LEU LEU PRO GLU PRO ASN HIS VAL MET SEQRES 5 B 87 LEU ASN HIS LEU TYR ALA LEU SER ILE LYS ASP SER VAL SEQRES 6 B 87 MET VAL LEU SER ALA THR HIS ARG TYR LYS LYS LYS TYR SEQRES 7 B 87 VAL THR THR LEU LEU TYR LYS PRO ILE SEQRES 1 E 330 MET GLU SER VAL ALA ALA GLU SER ALA PRO ALA PRO GLU SEQRES 2 E 330 ASN GLU HIS SER GLN GLU THR PRO GLU SER ASN SER SER SEQRES 3 E 330 VAL TYR THR THR PHE MET LYS SER HIS ARG CYS TYR ASP SEQRES 4 E 330 LEU ILE PRO THR SER SER LYS LEU VAL VAL PHE ASP THR SEQRES 5 E 330 SER LEU GLN VAL LYS LYS ALA PHE PHE ALA LEU VAL THR SEQRES 6 E 330 ASN GLY VAL ARG ALA ALA PRO LEU TRP ASP SER LYS LYS SEQRES 7 E 330 GLN SER PHE VAL GLY MET LEU THR ILE THR ASP PHE ILE SEQRES 8 E 330 ASN ILE LEU HIS ARG TYR TYR LYS SER ALA LEU VAL GLN SEQRES 9 E 330 ILE TYR GLU LEU GLU GLU HIS LYS ILE GLU THR TRP ARG SEQRES 10 E 330 GLU VAL TYR LEU GLN ASP SER PHE LYS PRO LEU VAL CYS SEQRES 11 E 330 ILE SER PRO ASN ALA SER LEU PHE ASP ALA VAL SER SER SEQRES 12 E 330 LEU ILE ARG ASN LYS ILE HIS ARG LEU PRO VAL ILE ASP SEQRES 13 E 330 PRO GLU SER GLY ASN THR LEU TYR ILE LEU THR HIS LYS SEQRES 14 E 330 ARG ILE LEU LYS PHE LEU LYS LEU PHE ILE THR GLU PHE SEQRES 15 E 330 PRO LYS PRO GLU PHE MET SER LYS SER LEU GLU GLU LEU SEQRES 16 E 330 GLN ILE GLY THR TYR ALA ASN ILE ALA MET VAL ARG THR SEQRES 17 E 330 THR THR PRO VAL TYR VAL ALA LEU GLY ILE PHE VAL GLN SEQRES 18 E 330 HIS ARG VAL SER ALA LEU PRO VAL VAL ASP GLU LYS GLY SEQRES 19 E 330 ARG VAL VAL ASP ILE TYR SER LYS PHE ASP VAL ILE ASN SEQRES 20 E 330 LEU ALA ALA GLU LYS THR TYR ASN ASN LEU ASP VAL SER SEQRES 21 E 330 VAL THR LYS ALA LEU GLN HIS ARG SER HIS TYR PHE GLU SEQRES 22 E 330 GLY VAL LEU LYS CYS TYR LEU HIS GLU THR LEU GLU ALA SEQRES 23 E 330 ILE ILE ASN ARG LEU VAL GLU ALA GLU VAL HIS ARG LEU SEQRES 24 E 330 VAL VAL VAL ASP GLU HIS ASP VAL VAL LYS GLY ILE VAL SEQRES 25 E 330 SER LEU SER ASP ILE LEU GLN ALA LEU VAL LEU THR GLY SEQRES 26 E 330 GLY GLU LYS LYS PRO HET ATP E1327 31 HET ATP E1328 31 HET AMP E1329 23 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 4 AMP C10 H14 N5 O7 P FORMUL 5 ATP 2(C10 H16 N5 O13 P3) FORMUL 6 HOH *361(H2 O1) HELIX 1 1 ARG A 405 LEU A 420 1 16 HELIX 2 2 SER A 530 ILE A 545 1 16 HELIX 3 3 SER E 26 SER E 34 1 9 HELIX 4 4 CYS E 37 ILE E 41 5 5 HELIX 5 5 GLN E 55 GLY E 67 1 13 HELIX 6 6 THR E 86 LEU E 102 1 17 HELIX 7 7 TYR E 106 HIS E 111 5 6 HELIX 8 8 LYS E 112 LEU E 121 1 10 HELIX 9 9 SER E 136 LYS E 148 1 13 HELIX 10 10 THR E 167 THR E 180 1 14 HELIX 11 11 PRO E 185 LYS E 190 5 6 HELIX 12 12 SER E 191 GLN E 196 1 6 HELIX 13 13 PRO E 211 ARG E 223 1 13 HELIX 14 14 PHE E 243 GLU E 251 5 9 HELIX 15 15 SER E 260 GLN E 266 1 7 HELIX 16 16 THR E 283 GLU E 295 1 13 HELIX 17 17 LEU E 314 LEU E 323 1 10 SHEET 1 BA 8 VAL B 215 LEU B 217 0 SHEET 2 BA 8 ALA A 395 LEU A 398 -1 O TRP A 396 N ILE B 216 SHEET 3 BA 8 TYR B 242 ALA B 243 -1 O ALA B 243 N HIS A 397 SHEET 4 BA 8 VAL B 250 TYR B 259 -1 O SER B 254 N TYR B 242 SHEET 5 BA 8 LYS B 262 PRO B 271 -1 O LYS B 262 N TYR B 259 SHEET 6 BA 8 SER E 44 ASP E 51 1 O SER E 45 N THR B 265 SHEET 7 BA 8 ALA E 71 ASP E 75 1 O PRO E 72 N PHE E 50 SHEET 8 BA 8 SER E 80 LEU E 85 -1 O SER E 80 N ASP E 75 SHEET 1 AA 5 ILE A 400 SER A 402 0 SHEET 2 AA 5 TYR A 459 ILE A 466 -1 O TYR A 459 N SER A 402 SHEET 3 AA 5 PHE A 444 GLN A 453 -1 O LYS A 446 N ILE A 466 SHEET 4 AA 5 TYR A 431 LYS A 437 -1 O LEU A 432 N LEU A 449 SHEET 5 AA 5 GLU A 423 ASN A 428 -1 O GLU A 423 N ARG A 435 SHEET 1 EA 2 LEU E 152 ILE E 155 0 SHEET 2 EA 2 THR E 162 LEU E 166 -1 N LEU E 163 O VAL E 154 SHEET 1 EB 3 VAL E 206 ARG E 207 0 SHEET 2 EB 3 ALA E 226 VAL E 230 1 O PRO E 228 N VAL E 206 SHEET 3 EB 3 VAL E 236 SER E 241 -1 N VAL E 237 O VAL E 229 SHEET 1 EC 3 LYS E 277 CYS E 278 0 SHEET 2 EC 3 ARG E 298 VAL E 302 1 O VAL E 300 N CYS E 278 SHEET 3 EC 3 VAL E 308 SER E 313 -1 N LYS E 309 O VAL E 301 SITE 1 AC1 21 ARG E 69 ARG E 151 LYS E 169 ILE E 239 SITE 2 AC1 21 SER E 241 PHE E 243 ASP E 244 ARG E 268 SITE 3 AC1 21 GLY E 274 VAL E 275 LEU E 276 VAL E 296 SITE 4 AC1 21 HIS E 297 ARG E 298 HOH E2229 HOH E2230 SITE 5 AC1 21 HOH E2231 HOH E2232 HOH E2233 HOH E2234 SITE 6 AC1 21 HOH E2235 SITE 1 AC2 20 ARG E 69 MET E 84 THR E 86 ILE E 87 SITE 2 AC2 20 THR E 88 ASP E 89 PRO E 127 LEU E 128 SITE 3 AC2 20 VAL E 129 ILE E 149 HIS E 150 ARG E 151 SITE 4 AC2 20 PRO E 153 SER E 225 LYS E 242 HOH E2036 SITE 5 AC2 20 HOH E2232 HOH E2236 HOH E2237 HOH E2238 SITE 1 AC3 18 ARG A 457 HIS E 150 THR E 199 ASN E 202 SITE 2 AC3 18 ILE E 203 ALA E 204 VAL E 224 SER E 225 SITE 3 AC3 18 ALA E 226 HIS E 297 ILE E 311 SER E 313 SITE 4 AC3 18 SER E 315 ASP E 316 HOH E2199 HOH E2239 SITE 5 AC3 18 HOH E2241 HOH E2242 CRYST1 48.961 121.032 127.247 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020424 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008262 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007859 0.00000