HEADER LYASE 23-AUG-07 2V9K TITLE CRYSTAL STRUCTURE OF HUMAN PUS10, A NOVEL PSEUDOURIDINE SYNTHASE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN FLJ32312; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PSEUDOURIDINE SYNTHASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: PROSTATE; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS PSEUDOURIDINE SYNTHASE, PUS10, RNA MODIFICATION, THUMP DOMAIN, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR C.J.MCCLEVERTY,M.HORNSBY,G.SPRAGGON,A.KREUSCH REVDAT 5 08-MAY-24 2V9K 1 LINK REVDAT 4 13-JUL-11 2V9K 1 VERSN REVDAT 3 24-FEB-09 2V9K 1 VERSN REVDAT 2 23-OCT-07 2V9K 1 JRNL REVDAT 1 09-OCT-07 2V9K 0 JRNL AUTH C.J.MCCLEVERTY,M.HORNSBY,G.SPRAGGON,A.KREUSCH JRNL TITL CRYSTAL STRUCTURE OF HUMAN PUS10, A NOVEL PSEUDOURIDINE JRNL TITL 2 SYNTHASE. JRNL REF J.MOL.BIOL. V. 373 1243 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17900615 JRNL DOI 10.1016/J.JMB.2007.08.053 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 37661 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2641 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3702 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 350 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 35.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.74000 REMARK 3 B22 (A**2) : 0.74000 REMARK 3 B33 (A**2) : -1.11000 REMARK 3 B12 (A**2) : 0.37000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.313 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3818 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5167 ; 1.273 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 464 ;11.275 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;36.381 ;24.382 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 656 ;16.577 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;16.723 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 576 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2859 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1708 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2593 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 310 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.239 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.229 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2389 ; 1.745 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3779 ; 2.605 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1575 ; 4.177 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1388 ; 5.911 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 54 REMARK 3 ORIGIN FOR THE GROUP (A): -22.9936 2.7386 -29.1211 REMARK 3 T TENSOR REMARK 3 T11: -0.0347 T22: -0.0395 REMARK 3 T33: -0.0663 T12: -0.0180 REMARK 3 T13: 0.0250 T23: 0.0709 REMARK 3 L TENSOR REMARK 3 L11: 6.6949 L22: 4.2504 REMARK 3 L33: 3.2304 L12: 4.6458 REMARK 3 L13: -2.5951 L23: -2.0568 REMARK 3 S TENSOR REMARK 3 S11: -0.3226 S12: 0.7320 S13: 0.3779 REMARK 3 S21: -0.4974 S22: 0.3914 S23: 0.1679 REMARK 3 S31: 0.1002 S32: -0.2571 S33: -0.0688 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 107 A 231 REMARK 3 ORIGIN FOR THE GROUP (A): -17.8663 -3.1901 -12.9333 REMARK 3 T TENSOR REMARK 3 T11: -0.1612 T22: -0.0799 REMARK 3 T33: -0.0307 T12: -0.0084 REMARK 3 T13: 0.0448 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 0.1724 L22: 2.9718 REMARK 3 L33: 2.0894 L12: 0.2059 REMARK 3 L13: -0.4021 L23: -1.4219 REMARK 3 S TENSOR REMARK 3 S11: 0.0500 S12: -0.1406 S13: 0.0833 REMARK 3 S21: -0.0226 S22: -0.0230 S23: -0.0897 REMARK 3 S31: -0.1107 S32: 0.0732 S33: -0.0270 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 244 A 285 REMARK 3 ORIGIN FOR THE GROUP (A): -10.3414 5.6092 -10.3122 REMARK 3 T TENSOR REMARK 3 T11: -0.0944 T22: 0.0184 REMARK 3 T33: -0.0014 T12: -0.0475 REMARK 3 T13: 0.0493 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 1.0706 L22: 4.4720 REMARK 3 L33: 1.7852 L12: 1.5159 REMARK 3 L13: -1.1783 L23: -1.8993 REMARK 3 S TENSOR REMARK 3 S11: 0.2720 S12: -0.2993 S13: 0.1030 REMARK 3 S21: 0.3953 S22: -0.2392 S23: 0.0285 REMARK 3 S31: -0.3024 S32: 0.2844 S33: -0.0327 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 286 A 410 REMARK 3 ORIGIN FOR THE GROUP (A): -25.6560 -24.1899 22.9250 REMARK 3 T TENSOR REMARK 3 T11: -0.0645 T22: 0.0022 REMARK 3 T33: -0.0305 T12: -0.0184 REMARK 3 T13: 0.0092 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 0.4257 L22: 0.9950 REMARK 3 L33: 3.0495 L12: -0.2788 REMARK 3 L13: -0.4566 L23: -0.2509 REMARK 3 S TENSOR REMARK 3 S11: 0.0214 S12: 0.0010 S13: 0.0727 REMARK 3 S21: 0.0304 S22: 0.0403 S23: -0.2429 REMARK 3 S31: -0.0113 S32: 0.0694 S33: -0.0617 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 411 A 527 REMARK 3 ORIGIN FOR THE GROUP (A): -33.3256 -15.2281 47.2862 REMARK 3 T TENSOR REMARK 3 T11: -0.0228 T22: -0.0625 REMARK 3 T33: -0.0845 T12: -0.0160 REMARK 3 T13: 0.0215 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 1.1859 L22: 0.4646 REMARK 3 L33: 5.0133 L12: 0.0361 REMARK 3 L13: -0.4223 L23: 0.1326 REMARK 3 S TENSOR REMARK 3 S11: 0.1927 S12: -0.0680 S13: 0.1710 REMARK 3 S21: 0.0773 S22: 0.0179 S23: -0.0827 REMARK 3 S31: -0.3849 S32: 0.1263 S33: -0.2106 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 55-62, 76-106, 234-243 DISORDERED, RESIDUES REMARK 3 63-75 ABSENT IN STRUCTURE. REMARK 4 REMARK 4 2V9K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1290033574. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39655 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 41.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG-4000, 0.15 M MGCL2, 0.1 M REMARK 280 HEPES PH 7.5, 20% GLYCEROL, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.63133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.31567 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.31567 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 102.63133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O2 GOL A1536 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2045 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 55 REMARK 465 LYS A 56 REMARK 465 ASP A 57 REMARK 465 GLU A 58 REMARK 465 LEU A 59 REMARK 465 ILE A 60 REMARK 465 LEU A 61 REMARK 465 GLU A 62 REMARK 465 VAL A 63 REMARK 465 MET A 64 REMARK 465 ASN A 65 REMARK 465 PRO A 66 REMARK 465 PRO A 67 REMARK 465 PRO A 68 REMARK 465 LYS A 69 REMARK 465 LYS A 70 REMARK 465 ILE A 71 REMARK 465 ARG A 72 REMARK 465 LEU A 73 REMARK 465 GLN A 74 REMARK 465 GLU A 75 REMARK 465 LEU A 76 REMARK 465 GLU A 77 REMARK 465 ASP A 78 REMARK 465 SER A 79 REMARK 465 ILE A 80 REMARK 465 ASP A 81 REMARK 465 ASN A 82 REMARK 465 LEU A 83 REMARK 465 SER A 84 REMARK 465 GLN A 85 REMARK 465 ASN A 86 REMARK 465 GLY A 87 REMARK 465 GLU A 88 REMARK 465 GLY A 89 REMARK 465 ARG A 90 REMARK 465 ILE A 91 REMARK 465 SER A 92 REMARK 465 VAL A 93 REMARK 465 SER A 94 REMARK 465 HIS A 95 REMARK 465 VAL A 96 REMARK 465 GLY A 97 REMARK 465 SER A 98 REMARK 465 THR A 99 REMARK 465 ALA A 100 REMARK 465 SER A 101 REMARK 465 LYS A 102 REMARK 465 ASN A 103 REMARK 465 SER A 104 REMARK 465 ASN A 105 REMARK 465 LEU A 106 REMARK 465 PHE A 234 REMARK 465 LYS A 235 REMARK 465 PRO A 236 REMARK 465 ALA A 237 REMARK 465 LYS A 238 REMARK 465 ASN A 239 REMARK 465 LYS A 240 REMARK 465 GLN A 241 REMARK 465 SER A 242 REMARK 465 VAL A 243 REMARK 465 ASP A 529 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 TYR A 41 CD2 CE2 REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 LYS A 127 CD CE NZ REMARK 470 LYS A 164 CE NZ REMARK 470 ASP A 232 CG OD1 OD2 REMARK 470 PHE A 244 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 LYS A 255 CG CD CE NZ REMARK 470 LYS A 257 CD CE NZ REMARK 470 GLU A 259 CD OE1 OE2 REMARK 470 LYS A 273 CG CD CE NZ REMARK 470 LYS A 331 CE NZ REMARK 470 LYS A 379 CD CE NZ REMARK 470 GLU A 398 CG CD OE1 OE2 REMARK 470 LYS A 404 NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 311 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2016 O HOH A 2017 1.40 REMARK 500 OE1 GLU A 184 O HOH A 2082 2.07 REMARK 500 O HOH A 2308 O HOH A 2311 2.16 REMARK 500 OE1 GLN A 130 O HOH A 2039 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 117 -111.50 -107.41 REMARK 500 ASP A 309 30.35 -146.88 REMARK 500 SER A 316 -167.23 63.12 REMARK 500 LEU A 350 -162.01 -112.60 REMARK 500 PRO A 499 148.11 -9.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 0 MET A 1 147.62 REMARK 500 PHE A 244 THR A 245 146.45 REMARK 500 CYS A 267 PRO A 268 59.20 REMARK 500 LYS A 498 PRO A 499 -74.76 REMARK 500 TRP A 523 PRO A 524 51.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TRP A 523 10.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2054 DISTANCE = 7.33 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1533 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 21 SG REMARK 620 2 CYS A 24 SG 105.0 REMARK 620 3 CYS A 109 SG 108.4 115.3 REMARK 620 4 CYS A 112 SG 117.2 105.7 105.7 REMARK 620 N 1 2 3 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1529 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1530 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1531 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1532 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1533 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A1534 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A1535 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1536 DBREF 2V9K A 1 529 UNP Q3MIT2 Q3MIT2_HUMAN 1 529 SEQADV 2V9K GLY A 0 UNP Q3MIT2 EXPRESSION TAG SEQRES 1 A 530 GLY MET PHE PRO LEU THR GLU GLU ASN LYS HIS VAL ALA SEQRES 2 A 530 GLN LEU LEU LEU ASN THR GLY THR CYS PRO ARG CYS ILE SEQRES 3 A 530 PHE ARG PHE CYS GLY VAL ASP PHE HIS ALA PRO TYR LYS SEQRES 4 A 530 LEU PRO TYR LYS GLU LEU LEU ASN GLU LEU GLN LYS PHE SEQRES 5 A 530 LEU GLU THR GLU LYS ASP GLU LEU ILE LEU GLU VAL MET SEQRES 6 A 530 ASN PRO PRO PRO LYS LYS ILE ARG LEU GLN GLU LEU GLU SEQRES 7 A 530 ASP SER ILE ASP ASN LEU SER GLN ASN GLY GLU GLY ARG SEQRES 8 A 530 ILE SER VAL SER HIS VAL GLY SER THR ALA SER LYS ASN SEQRES 9 A 530 SER ASN LEU ASN VAL CYS ASN VAL CYS LEU GLY ILE LEU SEQRES 10 A 530 GLN GLU PHE CYS GLU LYS ASP PHE ILE LYS LYS VAL CYS SEQRES 11 A 530 GLN LYS VAL GLU ALA SER GLY PHE GLU PHE THR SER LEU SEQRES 12 A 530 VAL PHE SER VAL SER PHE PRO PRO GLN LEU SER VAL ARG SEQRES 13 A 530 GLU HIS ALA ALA TRP LEU LEU VAL LYS GLN GLU MET GLY SEQRES 14 A 530 LYS GLN SER LEU SER LEU GLY ARG ASP ASP ILE VAL GLN SEQRES 15 A 530 LEU LYS GLU ALA TYR LYS TRP ILE THR HIS PRO LEU PHE SEQRES 16 A 530 SER GLU GLU LEU GLY VAL PRO ILE ASP GLY LYS SER LEU SEQRES 17 A 530 PHE GLU VAL SER VAL VAL PHE ALA HIS PRO GLU THR VAL SEQRES 18 A 530 GLU ASP CYS HIS PHE LEU ALA ALA ILE CYS PRO ASP CYS SEQRES 19 A 530 PHE LYS PRO ALA LYS ASN LYS GLN SER VAL PHE THR ARG SEQRES 20 A 530 MET ALA VAL MET LYS ALA LEU ASN LYS ILE LYS GLU GLU SEQRES 21 A 530 ASP PHE LEU LYS GLN PHE PRO CYS PRO PRO ASN SER PRO SEQRES 22 A 530 LYS ALA VAL CYS ALA VAL LEU GLU ILE GLU CYS ALA HIS SEQRES 23 A 530 GLY ALA VAL PHE VAL ALA GLY ARG TYR ASN LYS TYR SER SEQRES 24 A 530 ARG ASN LEU PRO GLN THR PRO TRP ILE ILE ASP GLY GLU SEQRES 25 A 530 ARG LYS LEU GLU SER SER VAL GLU GLU LEU ILE SER ASP SEQRES 26 A 530 HIS LEU LEU ALA VAL PHE LYS ALA GLU SER PHE ASN PHE SEQRES 27 A 530 SER SER SER GLY ARG GLU ASP VAL ASP VAL ARG THR LEU SEQRES 28 A 530 GLY ASN GLY ARG PRO PHE ALA ILE GLU LEU VAL ASN PRO SEQRES 29 A 530 HIS ARG VAL HIS PHE THR SER GLN GLU ILE LYS GLU LEU SEQRES 30 A 530 GLN GLN LYS ILE ASN ASN SER SER ASN LYS ILE GLN VAL SEQRES 31 A 530 ARG ASP LEU GLN LEU VAL THR ARG GLU ALA ILE GLY HIS SEQRES 32 A 530 MET LYS GLU GLY GLU GLU GLU LYS THR LYS THR TYR SER SEQRES 33 A 530 ALA LEU ILE TRP THR ASN LYS ALA ILE GLN LYS LYS ASP SEQRES 34 A 530 ILE GLU PHE LEU ASN ASP ILE LYS ASP LEU LYS ILE ASP SEQRES 35 A 530 GLN LYS THR PRO LEU ARG VAL LEU HIS ARG ARG PRO LEU SEQRES 36 A 530 ALA VAL ARG ALA ARG VAL ILE HIS PHE MET GLU THR GLN SEQRES 37 A 530 TYR VAL ASP GLU HIS HIS PHE ARG LEU HIS LEU LYS THR SEQRES 38 A 530 GLN ALA GLY THR TYR ILE LYS GLU PHE VAL HIS GLY ASP SEQRES 39 A 530 PHE GLY ARG THR LYS PRO ASN ILE GLY SER LEU MET ASN SEQRES 40 A 530 VAL THR ALA ASP ILE LEU GLU LEU ASP VAL GLU SER VAL SEQRES 41 A 530 ASP VAL ASP TRP PRO PRO ALA LEU ASP ASP HET CL A1529 1 HET CL A1530 1 HET CL A1531 1 HET CL A1532 1 HET ZN A1533 1 HET EPE A1534 15 HET EPE A1535 15 HET GOL A1536 6 HETNAM CL CHLORIDE ION HETNAM ZN ZINC ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM GOL GLYCEROL HETSYN EPE HEPES HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CL 4(CL 1-) FORMUL 6 ZN ZN 2+ FORMUL 7 EPE 2(C8 H18 N2 O4 S) FORMUL 9 GOL C3 H8 O3 FORMUL 10 HOH *350(H2 O) HELIX 1 1 THR A 5 GLU A 7 5 3 HELIX 2 2 ASN A 8 GLY A 19 1 12 HELIX 3 3 CYS A 21 CYS A 29 1 9 HELIX 4 4 HIS A 34 LEU A 39 5 6 HELIX 5 5 PRO A 40 GLU A 53 1 14 HELIX 6 6 GLN A 117 CYS A 120 5 4 HELIX 7 7 GLU A 121 SER A 135 1 15 HELIX 8 8 GLN A 151 GLN A 170 1 20 HELIX 9 9 GLY A 175 ILE A 179 5 5 HELIX 10 10 GLN A 181 GLY A 199 1 19 HELIX 11 11 HIS A 216 THR A 219 5 4 HELIX 12 12 VAL A 220 ALA A 228 1 9 HELIX 13 13 THR A 245 ILE A 256 1 12 HELIX 14 14 LYS A 257 PHE A 265 1 9 HELIX 15 15 SER A 317 ASP A 324 1 8 HELIX 16 16 HIS A 325 LYS A 331 1 7 HELIX 17 17 THR A 369 ASN A 382 1 14 HELIX 18 18 ARG A 397 LYS A 410 1 14 HELIX 19 19 GLN A 425 GLU A 430 1 6 HELIX 20 20 PHE A 431 ILE A 435 5 5 HELIX 21 21 PRO A 445 LEU A 449 5 5 HELIX 22 22 TYR A 485 GLY A 492 1 8 HELIX 23 23 ASN A 500 ASN A 506 1 7 SHEET 1 AA 3 VAL A 143 SER A 147 0 SHEET 2 AA 3 PHE A 208 ALA A 215 1 O PHE A 208 N VAL A 143 SHEET 3 AA 3 ALA A 277 HIS A 285 -1 O ALA A 277 N ALA A 215 SHEET 1 AB 4 SER A 334 SER A 339 0 SHEET 2 AB 4 ARG A 348 VAL A 361 -1 O ALA A 357 N SER A 338 SHEET 3 AB 4 VAL A 288 LYS A 296 -1 O VAL A 288 N LEU A 360 SHEET 4 AB 4 ILE A 387 VAL A 395 -1 O GLN A 388 N ASN A 295 SHEET 1 AC 8 SER A 334 SER A 339 0 SHEET 2 AC 8 ARG A 348 VAL A 361 -1 O ALA A 357 N SER A 338 SHEET 3 AC 8 ALA A 509 VAL A 519 1 O LEU A 514 N ARG A 348 SHEET 4 AC 8 LYS A 412 THR A 420 -1 O THR A 413 N GLU A 517 SHEET 5 AC 8 HIS A 473 THR A 480 -1 O PHE A 474 N ILE A 418 SHEET 6 AC 8 VAL A 456 ASP A 470 -1 N HIS A 462 O LYS A 479 SHEET 7 AC 8 LEU A 438 LYS A 443 -1 O LEU A 438 N ILE A 461 SHEET 8 AC 8 THR A 497 LYS A 498 -1 O LYS A 498 N ASP A 441 LINK SG CYS A 21 ZN ZN A1533 1555 1555 2.29 LINK SG CYS A 24 ZN ZN A1533 1555 1555 2.37 LINK SG CYS A 109 ZN ZN A1533 1555 1555 2.41 LINK SG CYS A 112 ZN ZN A1533 1555 1555 2.35 SITE 1 AC1 5 ARG A 447 ILE A 486 LYS A 487 EPE A1534 SITE 2 AC1 5 HOH A2206 SITE 1 AC2 3 GLY A 341 ARG A 354 HOH A2265 SITE 1 AC3 2 ASN A 385 HOH A2091 SITE 1 AC4 3 VAL A 146 LYS A 183 LYS A 187 SITE 1 AC5 4 CYS A 21 CYS A 24 CYS A 109 CYS A 112 SITE 1 AC6 11 ARG A 342 GLU A 343 ASP A 344 ARG A 452 SITE 2 AC6 11 ARG A 457 GLY A 483 THR A 484 TYR A 485 SITE 3 AC6 11 CL A1529 HOH A2206 HOH A2316 SITE 1 AC7 4 ASN A 254 TRP A 419 HIS A 473 LEU A 512 SITE 1 AC8 6 THR A 18 ASN A 110 PRO A 268 PRO A 269 SITE 2 AC8 6 ASN A 270 HOH A2140 CRYST1 80.611 80.611 153.947 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012405 0.007162 0.000000 0.00000 SCALE2 0.000000 0.014324 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006496 0.00000