HEADER RNA 03-SEP-07 2VAL TITLE CRYSTAL STRUCTURE OF AN ESCHERICHIA COLI TRNAGLY MICROHELIX AT 2.0 TITLE 2 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*GP*CP*GP*GP*GP*AP*AP)-3'; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: E.COLI TRNAGLY MICROHELIX; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-R(*UP*UP*CP*CP*CP*GP*CP)-3'; COMPND 8 CHAIN: C, D; COMPND 9 SYNONYM: E.COLI TRNAGLY MICROHELIX; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 4 ORGANISM_TAXID: 562; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 8 ORGANISM_TAXID: 562 KEYWDS RNA, GLYCYL-TRNA SYNTHETASE (GLYRS) SYSTEM, TRNAGLY ACCEPTOR STEM KEYWDS 2 MICROHELIX, RNA TRNA IDENTITY ELEMENTS, MAGNESIUM BINDING SITES EXPDTA X-RAY DIFFRACTION AUTHOR C.FORSTER,A.B.E.BRAUER,M.PERBANDT,D.LEHMANN,J.P.FURSTE,C.BETZEL, AUTHOR 2 V.A.ERDMANN REVDAT 5 16-OCT-19 2VAL 1 REMARK REVDAT 4 24-JUL-19 2VAL 1 REMARK REVDAT 3 14-APR-09 2VAL 1 COMPND REVDAT 2 24-FEB-09 2VAL 1 VERSN REVDAT 1 16-OCT-07 2VAL 0 JRNL AUTH C.FORSTER,A.B.E.BRAUER,M.PERBANDT,D.LEHMANN,J.P.FURSTE, JRNL AUTH 2 C.BETZEL,V.A.ERDMANN JRNL TITL CRYSTAL STRUCTURE OF AN ESCHERICHIA COLI TRNAGLY MICROHELIX JRNL TITL 2 AT 2.0 ANGSTROM RESOLUTION JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 363 621 2007 JRNL REFN ISSN 0006-291X JRNL PMID 17888869 JRNL DOI 10.1016/J.BBRC.2007.09.008 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 9123 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 586 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VAL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1290033657. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.80630 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6908 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.29300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SODIUM CACODYLATE, PH 6.0, 10 MM REMARK 280 SPERMINE, 10 MM MAGNESIUM SULFATE, 2.0 M AMMONIUM SULFATE, 0.5 REMARK 280 MM RNA, ROOM TEMPERATUE. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.21400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.60700 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.60700 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 87.21400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2010 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G A 1 C6 G A 1 N1 -0.045 REMARK 500 G A 1 N7 G A 1 C8 0.063 REMARK 500 C A 2 C2' C A 2 C1' -0.050 REMARK 500 C A 2 C4 C A 2 C5 0.053 REMARK 500 C A 2 C5 C A 2 C6 0.055 REMARK 500 G A 3 O4' G A 3 C1' 0.083 REMARK 500 G A 3 C2 G A 3 N3 0.120 REMARK 500 G A 3 C5 G A 3 C6 -0.100 REMARK 500 G A 3 C6 G A 3 N1 0.067 REMARK 500 G A 3 C5 G A 3 N7 0.063 REMARK 500 G A 4 O4' G A 4 C1' 0.110 REMARK 500 G A 4 C2' G A 4 O2' -0.099 REMARK 500 G A 4 C4 G A 4 C5 -0.044 REMARK 500 G A 4 N9 G A 4 C4 0.052 REMARK 500 G A 5 P G A 5 O5' 0.107 REMARK 500 G A 5 O3' G A 5 C3' -0.095 REMARK 500 G A 5 N1 G A 5 C2 0.054 REMARK 500 G A 5 C6 G A 5 N1 0.050 REMARK 500 A A 6 O5' A A 6 C5' -0.102 REMARK 500 A A 6 C5' A A 6 C4' 0.100 REMARK 500 A A 6 O3' A A 6 C3' 0.079 REMARK 500 A A 6 C2 A A 6 N3 -0.062 REMARK 500 A A 6 N3 A A 6 C4 0.122 REMARK 500 A A 6 C6 A A 6 N1 0.047 REMARK 500 A A 6 C5 A A 6 N7 0.059 REMARK 500 A A 6 C6 A A 6 N6 0.053 REMARK 500 A A 7 C2' A A 7 C1' 0.085 REMARK 500 A A 7 O4' A A 7 C1' 0.078 REMARK 500 A A 7 C1' A A 7 N9 0.092 REMARK 500 A A 7 C5 A A 7 C6 0.083 REMARK 500 A A 7 C5 A A 7 N7 0.041 REMARK 500 A A 7 N7 A A 7 C8 0.085 REMARK 500 A A 7 C8 A A 7 N9 0.051 REMARK 500 A A 7 N9 A A 7 C4 0.049 REMARK 500 A A 7 C6 A A 7 N6 0.094 REMARK 500 G B 1 C2 G B 1 N3 0.052 REMARK 500 C B 2 O3' C B 2 C3' 0.115 REMARK 500 G B 3 C2 G B 3 N3 0.077 REMARK 500 G B 3 C5 G B 3 C6 -0.067 REMARK 500 G B 3 C6 G B 3 N1 0.103 REMARK 500 G B 3 C5 G B 3 N7 0.046 REMARK 500 G B 3 N9 G B 3 C4 0.050 REMARK 500 G B 4 C5' G B 4 C4' -0.054 REMARK 500 G B 4 O4' G B 4 C1' 0.092 REMARK 500 G B 4 N1 G B 4 C2 0.050 REMARK 500 G B 4 C5 G B 4 C6 -0.111 REMARK 500 G B 4 C6 G B 4 N1 0.080 REMARK 500 G B 4 C5 G B 4 N7 0.047 REMARK 500 G B 4 C2 G B 4 N2 0.074 REMARK 500 G B 4 O3' G B 5 P -0.105 REMARK 500 REMARK 500 THIS ENTRY HAS 99 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 1 C4' - C3' - C2' ANGL. DEV. = -11.2 DEGREES REMARK 500 G A 1 O4' - C1' - N9 ANGL. DEV. = -7.2 DEGREES REMARK 500 G A 1 N1 - C2 - N2 ANGL. DEV. = -6.0 DEGREES REMARK 500 G A 1 N3 - C2 - N2 ANGL. DEV. = 7.3 DEGREES REMARK 500 G A 1 N1 - C6 - O6 ANGL. DEV. = -3.6 DEGREES REMARK 500 G A 1 C3' - O3' - P ANGL. DEV. = 10.8 DEGREES REMARK 500 C A 2 O5' - C5' - C4' ANGL. DEV. = -9.7 DEGREES REMARK 500 C A 2 O4' - C4' - C3' ANGL. DEV. = -10.0 DEGREES REMARK 500 C A 2 C1' - O4' - C4' ANGL. DEV. = -5.7 DEGREES REMARK 500 C A 2 C4' - C3' - C2' ANGL. DEV. = -7.2 DEGREES REMARK 500 G A 3 O3' - P - OP2 ANGL. DEV. = 8.9 DEGREES REMARK 500 G A 3 O5' - P - OP1 ANGL. DEV. = -6.2 DEGREES REMARK 500 G A 3 P - O5' - C5' ANGL. DEV. = -12.9 DEGREES REMARK 500 G A 3 O4' - C1' - N9 ANGL. DEV. = -7.0 DEGREES REMARK 500 G A 3 C2 - N3 - C4 ANGL. DEV. = -5.0 DEGREES REMARK 500 G A 3 N3 - C4 - C5 ANGL. DEV. = 6.0 DEGREES REMARK 500 G A 3 C5 - C6 - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 G A 3 C4 - C5 - N7 ANGL. DEV. = 4.4 DEGREES REMARK 500 G A 3 C5 - N7 - C8 ANGL. DEV. = -3.6 DEGREES REMARK 500 G A 3 C8 - N9 - C4 ANGL. DEV. = 3.1 DEGREES REMARK 500 G A 3 N9 - C4 - C5 ANGL. DEV. = -4.6 DEGREES REMARK 500 G A 3 N1 - C6 - O6 ANGL. DEV. = 17.1 DEGREES REMARK 500 G A 3 C5 - C6 - O6 ANGL. DEV. = -22.3 DEGREES REMARK 500 G A 4 OP1 - P - OP2 ANGL. DEV. = 9.9 DEGREES REMARK 500 G A 4 O5' - P - OP1 ANGL. DEV. = -8.3 DEGREES REMARK 500 G A 4 O5' - C5' - C4' ANGL. DEV. = -5.4 DEGREES REMARK 500 G A 4 O4' - C1' - N9 ANGL. DEV. = -7.8 DEGREES REMARK 500 G A 4 C2 - N3 - C4 ANGL. DEV. = -4.6 DEGREES REMARK 500 G A 4 N3 - C4 - C5 ANGL. DEV. = 6.5 DEGREES REMARK 500 G A 4 N7 - C8 - N9 ANGL. DEV. = -3.9 DEGREES REMARK 500 G A 4 C8 - N9 - C4 ANGL. DEV. = 2.5 DEGREES REMARK 500 G A 4 N3 - C4 - N9 ANGL. DEV. = -5.1 DEGREES REMARK 500 G A 4 C4 - N9 - C1' ANGL. DEV. = -8.4 DEGREES REMARK 500 G A 5 OP1 - P - OP2 ANGL. DEV. = 18.7 DEGREES REMARK 500 G A 5 C6 - N1 - C2 ANGL. DEV. = -8.7 DEGREES REMARK 500 G A 5 C4 - C5 - C6 ANGL. DEV. = 4.2 DEGREES REMARK 500 G A 5 C5 - C6 - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 G A 5 C4 - C5 - N7 ANGL. DEV. = -2.5 DEGREES REMARK 500 G A 5 C5 - N7 - C8 ANGL. DEV. = 4.0 DEGREES REMARK 500 G A 5 N7 - C8 - N9 ANGL. DEV. = -4.2 DEGREES REMARK 500 G A 5 C8 - N9 - C4 ANGL. DEV. = 3.0 DEGREES REMARK 500 G A 5 N1 - C6 - O6 ANGL. DEV. = 4.6 DEGREES REMARK 500 G A 5 C5 - C6 - O6 ANGL. DEV. = -8.6 DEGREES REMARK 500 A A 6 O5' - P - OP2 ANGL. DEV. = -10.4 DEGREES REMARK 500 A A 6 O4' - C1' - N9 ANGL. DEV. = -6.2 DEGREES REMARK 500 A A 6 C6 - N1 - C2 ANGL. DEV. = 6.6 DEGREES REMARK 500 A A 6 N1 - C2 - N3 ANGL. DEV. = -5.0 DEGREES REMARK 500 A A 6 C4 - C5 - C6 ANGL. DEV. = -5.8 DEGREES REMARK 500 A A 6 C4 - C5 - N7 ANGL. DEV. = -3.2 DEGREES REMARK 500 A A 6 C5 - N7 - C8 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 231 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2VAL A 1 7 PDB 2VAL 2VAL 1 7 DBREF 2VAL B 1 7 PDB 2VAL 2VAL 1 7 DBREF 2VAL C 66 72 PDB 2VAL 2VAL 66 72 DBREF 2VAL D 66 72 PDB 2VAL 2VAL 66 72 SEQRES 1 A 7 G C G G G A A SEQRES 1 B 7 G C G G G A A SEQRES 1 C 7 U U C C C G C SEQRES 1 D 7 U U C C C G C HET MG C1073 1 HETNAM MG MAGNESIUM ION FORMUL 5 MG MG 2+ FORMUL 6 HOH *56(H2 O) CRYST1 35.348 35.348 130.821 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028290 0.016333 0.000000 0.00000 SCALE2 0.000000 0.032667 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007644 0.00000