HEADER TRANSFERASE 04-SEP-07 2VAR TITLE CRYSTAL STRUCTURE OF SULFOLOBUS SOLFATARICUS 2-KETO-3-DEOXYGLUCONATE TITLE 2 KINASE COMPLEXED WITH 2-KETO-3-DEOXYGLUCONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOKINASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: 2-KETO-3-DEOXYGLUCONATE KINASE; COMPND 5 EC: 2.7.1.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, TRANSFERASE, SULFOLOBUS SOLFATARICUS, PFKB FAMILY KEYWDS 2 CARBOHYDRATE KINASE, 2- KETO-3-DEOXYGLUCONATE KINASEKINASE, 2- KETO- KEYWDS 3 3-DEOXYGLUCONATE KINASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.POTTER,A.THEODOSSIS,M.KEROU,H.J.LAMBLE,S.D.BULL,D.W.HOUGH, AUTHOR 2 M.J.DANSON,G.L.TAYLOR REVDAT 5 08-MAY-24 2VAR 1 HETSYN REVDAT 4 29-JUL-20 2VAR 1 REMARK SITE ATOM REVDAT 3 10-NOV-09 2VAR 1 JRNL REMARK REVDAT 2 24-FEB-09 2VAR 1 VERSN REVDAT 1 02-OCT-07 2VAR 0 JRNL AUTH J.A.POTTER,M.KEROU,H.J.LAMBLE,S.D.BULL,D.W.HOUGH,M.J.DANSON, JRNL AUTH 2 G.L.TAYLOR JRNL TITL THE STRUCTURE OF SULFOLOBUS SOLFATARICUS JRNL TITL 2 2-KETO-3-DEOXYGLUCONATE KINASE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 64 1283 2008 JRNL REFN ISSN 0907-4449 JRNL PMID 19018105 JRNL DOI 10.1107/S0907444908036111 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 76307 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5491 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 265 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7335 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 234 REMARK 3 SOLVENT ATOMS : 457 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.825 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7761 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10548 ; 1.700 ; 2.012 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 944 ; 6.470 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 337 ;33.879 ;24.481 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1339 ;15.034 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;16.019 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1204 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5731 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3777 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5309 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 478 ; 0.179 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 127 ; 0.211 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.235 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4824 ; 0.926 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7549 ; 1.425 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3383 ; 2.425 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2994 ; 3.508 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VAR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1290033297. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80339 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 90.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 280.52133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 140.26067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 210.39100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.13033 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 350.65167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 280.52133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 140.26067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 70.13033 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 210.39100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 350.65167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 30640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -111.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 313 REMARK 465 MET B 1 REMARK 465 THR B 313 REMARK 465 MET C 1 REMARK 465 THR C 313 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 94 O HOH A 2042 1.60 REMARK 500 CB SER A 16 O HOH A 2004 1.72 REMARK 500 N GLY C 293 O HOH C 2139 1.90 REMARK 500 ND2 ASN C 15 O HOH C 2004 1.93 REMARK 500 CE LYS C 63 O HOH C 2029 2.06 REMARK 500 CB ASN C 15 O HOH C 2004 2.06 REMARK 500 OE2 GLU A 190 O HOH A 2096 2.08 REMARK 500 OD1 ASN B 238 O HOH B 2125 2.10 REMARK 500 O HOH C 2032 O HOH C 2091 2.10 REMARK 500 CZ ARG B 166 O HOH B 2096 2.16 REMARK 500 O LEU A 218 O HOH A 2107 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 159 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 159 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 LEU A 301 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 ASN C 15 CB - CA - C ANGL. DEV. = -13.6 DEGREES REMARK 500 ARG C 159 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 LEU C 161 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 33 -147.73 -158.15 REMARK 500 LEU A 116 127.17 -37.36 REMARK 500 ASN A 164 59.46 36.94 REMARK 500 ASP A 252 114.14 -160.25 REMARK 500 ALA B 33 -144.84 -152.77 REMARK 500 MET B 100 16.38 55.84 REMARK 500 ARG B 108 -1.78 -146.08 REMARK 500 ASN B 164 61.02 35.98 REMARK 500 ASP B 237 -117.32 57.38 REMARK 500 ASP B 252 114.44 -163.56 REMARK 500 ALA C 33 -145.15 -154.75 REMARK 500 ARG C 108 -4.17 -140.01 REMARK 500 ASN C 164 58.06 33.84 REMARK 500 ASP C 237 -111.14 57.57 REMARK 500 ASP C 252 107.62 -165.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V78 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SULFOLOBUS SOLFATARICUS 2 -KETO-3- REMARK 900 DEOXYGLUCONATE KINASE DBREF 2VAR A 1 313 UNP Q97U29 Q97U29_SULSO 1 313 DBREF 2VAR B 1 313 UNP Q97U29 Q97U29_SULSO 1 313 DBREF 2VAR C 1 313 UNP Q97U29 Q97U29_SULSO 1 313 SEQRES 1 A 313 MET VAL ASP VAL ILE ALA LEU GLY GLU PRO LEU ILE GLN SEQRES 2 A 313 PHE ASN SER PHE ASN PRO GLY PRO LEU ARG PHE VAL ASN SEQRES 3 A 313 TYR PHE GLU LYS HIS VAL ALA GLY SER GLU LEU ASN PHE SEQRES 4 A 313 CYS ILE ALA VAL VAL ARG ASN HIS LEU SER CYS SER LEU SEQRES 5 A 313 ILE ALA ARG VAL GLY ASN ASP GLU PHE GLY LYS ASN ILE SEQRES 6 A 313 ILE GLU TYR SER ARG ALA GLN GLY ILE ASP THR SER HIS SEQRES 7 A 313 ILE LYS VAL ASP ASN GLU SER PHE THR GLY ILE TYR PHE SEQRES 8 A 313 ILE GLN ARG GLY TYR PRO ILE PRO MET LYS SER GLU LEU SEQRES 9 A 313 VAL TYR TYR ARG LYS GLY SER ALA GLY SER ARG LEU SER SEQRES 10 A 313 PRO GLU ASP ILE ASN GLU ASN TYR VAL ARG ASN SER ARG SEQRES 11 A 313 LEU VAL HIS SER THR GLY ILE THR LEU ALA ILE SER ASP SEQRES 12 A 313 ASN ALA LYS GLU ALA VAL ILE LYS ALA PHE GLU LEU ALA SEQRES 13 A 313 LYS SER ARG SER LEU ASP THR ASN ILE ARG PRO LYS LEU SEQRES 14 A 313 TRP SER SER LEU GLU LYS ALA LYS GLU THR ILE LEU SER SEQRES 15 A 313 ILE LEU LYS LYS TYR ASP ILE GLU VAL LEU ILE THR ASP SEQRES 16 A 313 PRO ASP ASP THR LYS ILE LEU LEU ASP VAL THR ASP PRO SEQRES 17 A 313 ASP GLU ALA TYR ARG LYS TYR LYS GLU LEU GLY VAL LYS SEQRES 18 A 313 VAL LEU LEU TYR LYS LEU GLY SER LYS GLY ALA ILE ALA SEQRES 19 A 313 TYR LYS ASP ASN VAL LYS ALA PHE LYS ASP ALA TYR LYS SEQRES 20 A 313 VAL PRO VAL GLU ASP PRO THR GLY ALA GLY ASP ALA MET SEQRES 21 A 313 ALA GLY THR PHE VAL SER LEU TYR LEU GLN GLY LYS ASP SEQRES 22 A 313 ILE GLU TYR SER LEU ALA HIS GLY ILE ALA ALA SER THR SEQRES 23 A 313 LEU VAL ILE THR VAL ARG GLY ASP ASN GLU LEU THR PRO SEQRES 24 A 313 THR LEU GLU ASP ALA GLU ARG PHE LEU ASN GLU PHE LYS SEQRES 25 A 313 THR SEQRES 1 B 313 MET VAL ASP VAL ILE ALA LEU GLY GLU PRO LEU ILE GLN SEQRES 2 B 313 PHE ASN SER PHE ASN PRO GLY PRO LEU ARG PHE VAL ASN SEQRES 3 B 313 TYR PHE GLU LYS HIS VAL ALA GLY SER GLU LEU ASN PHE SEQRES 4 B 313 CYS ILE ALA VAL VAL ARG ASN HIS LEU SER CYS SER LEU SEQRES 5 B 313 ILE ALA ARG VAL GLY ASN ASP GLU PHE GLY LYS ASN ILE SEQRES 6 B 313 ILE GLU TYR SER ARG ALA GLN GLY ILE ASP THR SER HIS SEQRES 7 B 313 ILE LYS VAL ASP ASN GLU SER PHE THR GLY ILE TYR PHE SEQRES 8 B 313 ILE GLN ARG GLY TYR PRO ILE PRO MET LYS SER GLU LEU SEQRES 9 B 313 VAL TYR TYR ARG LYS GLY SER ALA GLY SER ARG LEU SER SEQRES 10 B 313 PRO GLU ASP ILE ASN GLU ASN TYR VAL ARG ASN SER ARG SEQRES 11 B 313 LEU VAL HIS SER THR GLY ILE THR LEU ALA ILE SER ASP SEQRES 12 B 313 ASN ALA LYS GLU ALA VAL ILE LYS ALA PHE GLU LEU ALA SEQRES 13 B 313 LYS SER ARG SER LEU ASP THR ASN ILE ARG PRO LYS LEU SEQRES 14 B 313 TRP SER SER LEU GLU LYS ALA LYS GLU THR ILE LEU SER SEQRES 15 B 313 ILE LEU LYS LYS TYR ASP ILE GLU VAL LEU ILE THR ASP SEQRES 16 B 313 PRO ASP ASP THR LYS ILE LEU LEU ASP VAL THR ASP PRO SEQRES 17 B 313 ASP GLU ALA TYR ARG LYS TYR LYS GLU LEU GLY VAL LYS SEQRES 18 B 313 VAL LEU LEU TYR LYS LEU GLY SER LYS GLY ALA ILE ALA SEQRES 19 B 313 TYR LYS ASP ASN VAL LYS ALA PHE LYS ASP ALA TYR LYS SEQRES 20 B 313 VAL PRO VAL GLU ASP PRO THR GLY ALA GLY ASP ALA MET SEQRES 21 B 313 ALA GLY THR PHE VAL SER LEU TYR LEU GLN GLY LYS ASP SEQRES 22 B 313 ILE GLU TYR SER LEU ALA HIS GLY ILE ALA ALA SER THR SEQRES 23 B 313 LEU VAL ILE THR VAL ARG GLY ASP ASN GLU LEU THR PRO SEQRES 24 B 313 THR LEU GLU ASP ALA GLU ARG PHE LEU ASN GLU PHE LYS SEQRES 25 B 313 THR SEQRES 1 C 313 MET VAL ASP VAL ILE ALA LEU GLY GLU PRO LEU ILE GLN SEQRES 2 C 313 PHE ASN SER PHE ASN PRO GLY PRO LEU ARG PHE VAL ASN SEQRES 3 C 313 TYR PHE GLU LYS HIS VAL ALA GLY SER GLU LEU ASN PHE SEQRES 4 C 313 CYS ILE ALA VAL VAL ARG ASN HIS LEU SER CYS SER LEU SEQRES 5 C 313 ILE ALA ARG VAL GLY ASN ASP GLU PHE GLY LYS ASN ILE SEQRES 6 C 313 ILE GLU TYR SER ARG ALA GLN GLY ILE ASP THR SER HIS SEQRES 7 C 313 ILE LYS VAL ASP ASN GLU SER PHE THR GLY ILE TYR PHE SEQRES 8 C 313 ILE GLN ARG GLY TYR PRO ILE PRO MET LYS SER GLU LEU SEQRES 9 C 313 VAL TYR TYR ARG LYS GLY SER ALA GLY SER ARG LEU SER SEQRES 10 C 313 PRO GLU ASP ILE ASN GLU ASN TYR VAL ARG ASN SER ARG SEQRES 11 C 313 LEU VAL HIS SER THR GLY ILE THR LEU ALA ILE SER ASP SEQRES 12 C 313 ASN ALA LYS GLU ALA VAL ILE LYS ALA PHE GLU LEU ALA SEQRES 13 C 313 LYS SER ARG SER LEU ASP THR ASN ILE ARG PRO LYS LEU SEQRES 14 C 313 TRP SER SER LEU GLU LYS ALA LYS GLU THR ILE LEU SER SEQRES 15 C 313 ILE LEU LYS LYS TYR ASP ILE GLU VAL LEU ILE THR ASP SEQRES 16 C 313 PRO ASP ASP THR LYS ILE LEU LEU ASP VAL THR ASP PRO SEQRES 17 C 313 ASP GLU ALA TYR ARG LYS TYR LYS GLU LEU GLY VAL LYS SEQRES 18 C 313 VAL LEU LEU TYR LYS LEU GLY SER LYS GLY ALA ILE ALA SEQRES 19 C 313 TYR LYS ASP ASN VAL LYS ALA PHE LYS ASP ALA TYR LYS SEQRES 20 C 313 VAL PRO VAL GLU ASP PRO THR GLY ALA GLY ASP ALA MET SEQRES 21 C 313 ALA GLY THR PHE VAL SER LEU TYR LEU GLN GLY LYS ASP SEQRES 22 C 313 ILE GLU TYR SER LEU ALA HIS GLY ILE ALA ALA SER THR SEQRES 23 C 313 LEU VAL ILE THR VAL ARG GLY ASP ASN GLU LEU THR PRO SEQRES 24 C 313 THR LEU GLU ASP ALA GLU ARG PHE LEU ASN GLU PHE LYS SEQRES 25 C 313 THR HET KDG A1313 12 HET KDF A1314 12 HET ANP A1315 31 HET AMP A1316 23 HET KDG B1313 12 HET KDF B1314 12 HET ANP B1315 31 HET AMP B1316 23 HET KDG C1313 12 HET KDF C1314 12 HET ANP C1315 31 HET AMP C1316 23 HETNAM KDG 2-KETO-3-DEOXYGLUCONATE HETNAM KDF 3-DEOXY-ALPHA-D-ERYTHRO-HEX-2-ULOFURANOSONIC ACID HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM AMP ADENOSINE MONOPHOSPHATE HETSYN KDF 2-KETO-3-DEOXYGLUCONATE; 3-DEOXY-ALPHA-D-ERYTHRO-HEX-2- HETSYN 2 KDF ULOSONIC ACID; 3-DEOXY-D-ERYTHRO-HEX-2-ULOSONIC ACID; HETSYN 3 KDF 3-DEOXY-ERYTHRO-HEX-2-ULOSONIC ACID FORMUL 4 KDG 3(C6 H10 O6) FORMUL 5 KDF 3(C6 H10 O6) FORMUL 6 ANP 3(C10 H17 N6 O12 P3) FORMUL 7 AMP 3(C10 H14 N5 O7 P) FORMUL 16 HOH *457(H2 O) HELIX 1 1 PRO A 21 VAL A 25 5 5 HELIX 2 2 GLY A 34 ASN A 46 1 13 HELIX 3 3 ASP A 59 GLN A 72 1 14 HELIX 4 4 SER A 111 LEU A 116 5 6 HELIX 5 5 SER A 117 ILE A 121 5 5 HELIX 6 6 ASN A 122 ASN A 128 1 7 HELIX 7 7 GLY A 136 ILE A 141 1 6 HELIX 8 8 SER A 142 ALA A 156 1 15 HELIX 9 9 ARG A 166 TRP A 170 5 5 HELIX 10 10 SER A 172 TYR A 187 1 16 HELIX 11 11 ASP A 195 ASP A 204 1 10 HELIX 12 12 ASP A 207 GLU A 217 1 11 HELIX 13 13 GLY A 228 LYS A 230 5 3 HELIX 14 14 GLY A 255 GLN A 270 1 16 HELIX 15 15 ASP A 273 THR A 290 1 18 HELIX 16 16 THR A 300 PHE A 311 1 12 HELIX 17 17 PRO B 21 VAL B 25 5 5 HELIX 18 18 GLY B 34 ASN B 46 1 13 HELIX 19 19 ASP B 59 GLN B 72 1 14 HELIX 20 20 ALA B 112 LEU B 116 5 5 HELIX 21 21 SER B 117 ILE B 121 5 5 HELIX 22 22 ASN B 122 ASN B 128 1 7 HELIX 23 23 GLY B 136 SER B 142 1 7 HELIX 24 24 SER B 142 ALA B 156 1 15 HELIX 25 25 ARG B 166 TRP B 170 5 5 HELIX 26 26 SER B 172 TYR B 187 1 16 HELIX 27 27 ASP B 195 ASP B 204 1 10 HELIX 28 28 ASP B 207 LEU B 218 1 12 HELIX 29 29 GLY B 228 LYS B 230 5 3 HELIX 30 30 GLY B 255 GLN B 270 1 16 HELIX 31 31 ASP B 273 ILE B 289 1 17 HELIX 32 32 THR B 300 PHE B 311 1 12 HELIX 33 33 PRO C 21 VAL C 25 5 5 HELIX 34 34 GLY C 34 ASN C 46 1 13 HELIX 35 35 ASP C 59 GLN C 72 1 14 HELIX 36 36 ALA C 112 LEU C 116 5 5 HELIX 37 37 SER C 117 ILE C 121 5 5 HELIX 38 38 ASN C 122 ASN C 128 1 7 HELIX 39 39 GLY C 136 SER C 142 1 7 HELIX 40 40 SER C 142 ALA C 156 1 15 HELIX 41 41 ARG C 166 TRP C 170 5 5 HELIX 42 42 SER C 172 TYR C 187 1 16 HELIX 43 43 ASP C 195 ASP C 204 1 10 HELIX 44 44 ASP C 207 LEU C 218 1 12 HELIX 45 45 GLY C 228 LYS C 230 5 3 HELIX 46 46 GLY C 255 GLN C 270 1 16 HELIX 47 47 ASP C 273 ILE C 289 1 17 HELIX 48 48 THR C 300 PHE C 311 1 12 SHEET 1 AA 9 ILE A 79 ASP A 82 0 SHEET 2 AA 9 CYS A 50 GLY A 57 1 O ALA A 54 N LYS A 80 SHEET 3 AA 9 VAL A 4 LEU A 7 1 O VAL A 4 N SER A 51 SHEET 4 AA 9 LEU A 131 THR A 135 1 O LEU A 131 N ILE A 5 SHEET 5 AA 9 ARG A 159 ASP A 162 1 O SER A 160 N SER A 134 SHEET 6 AA 9 ILE A 189 THR A 194 1 N GLU A 190 O ARG A 159 SHEET 7 AA 9 VAL A 220 LYS A 226 1 N LYS A 221 O ILE A 189 SHEET 8 AA 9 ALA A 232 LYS A 236 -1 O ILE A 233 N TYR A 225 SHEET 9 AA 9 VAL A 239 LYS A 243 -1 O VAL A 239 N LYS A 236 SHEET 1 AB 8 SER A 102 TYR A 107 0 SHEET 2 AB 8 ILE A 89 ARG A 94 -1 O ILE A 89 N TYR A 107 SHEET 3 AB 8 LEU A 11 SER A 16 1 O ILE A 12 N TYR A 90 SHEET 4 AB 8 TYR A 27 ALA A 33 -1 O GLU A 29 N ASN A 15 SHEET 5 AB 8 TYR B 27 ALA B 33 -1 O PHE B 28 N PHE A 28 SHEET 6 AB 8 LEU B 11 SER B 16 -1 O LEU B 11 N ALA B 33 SHEET 7 AB 8 ILE B 89 ARG B 94 1 O TYR B 90 N PHE B 14 SHEET 8 AB 8 SER B 102 TYR B 107 -1 O GLU B 103 N GLN B 93 SHEET 1 BA 9 ILE B 79 ASP B 82 0 SHEET 2 BA 9 CYS B 50 GLY B 57 1 O ALA B 54 N LYS B 80 SHEET 3 BA 9 VAL B 4 LEU B 7 1 O VAL B 4 N SER B 51 SHEET 4 BA 9 LEU B 131 THR B 135 1 O LEU B 131 N ILE B 5 SHEET 5 BA 9 ARG B 159 ASP B 162 1 O SER B 160 N SER B 134 SHEET 6 BA 9 ILE B 189 THR B 194 1 N GLU B 190 O ARG B 159 SHEET 7 BA 9 VAL B 220 LYS B 226 1 N LYS B 221 O ILE B 189 SHEET 8 BA 9 ALA B 232 LYS B 236 -1 O ILE B 233 N TYR B 225 SHEET 9 BA 9 VAL B 239 LYS B 243 -1 O VAL B 239 N LYS B 236 SHEET 1 CA 9 ILE C 79 ASP C 82 0 SHEET 2 CA 9 CYS C 50 GLY C 57 1 O ALA C 54 N LYS C 80 SHEET 3 CA 9 VAL C 4 LEU C 7 1 O VAL C 4 N SER C 51 SHEET 4 CA 9 LEU C 131 THR C 135 1 O LEU C 131 N ILE C 5 SHEET 5 CA 9 ARG C 159 ASP C 162 1 O SER C 160 N SER C 134 SHEET 6 CA 9 ILE C 189 THR C 194 1 N GLU C 190 O ARG C 159 SHEET 7 CA 9 VAL C 220 LYS C 226 1 N LYS C 221 O ILE C 189 SHEET 8 CA 9 ALA C 232 LYS C 236 -1 O ILE C 233 N TYR C 225 SHEET 9 CA 9 VAL C 239 LYS C 243 -1 O VAL C 239 N LYS C 236 SHEET 1 CB 4 PHE C 28 ALA C 33 0 SHEET 2 CB 4 LEU C 11 SER C 16 -1 O LEU C 11 N ALA C 33 SHEET 3 CB 4 ILE C 89 ARG C 94 1 O TYR C 90 N PHE C 14 SHEET 4 CB 4 SER C 102 TYR C 107 -1 O GLU C 103 N GLN C 93 CISPEP 1 TYR A 96 PRO A 97 0 2.85 CISPEP 2 TYR B 96 PRO B 97 0 5.82 CISPEP 3 TYR C 96 PRO C 97 0 -0.67 CRYST1 104.553 104.553 420.782 90.00 90.00 120.00 P 65 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009565 0.005522 0.000000 0.00000 SCALE2 0.000000 0.011044 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002377 0.00000 MTRIX1 1 -0.491000 0.364000 0.792000 -74.49827 1 MTRIX2 1 0.312000 -0.775000 0.550000 15.89416 1 MTRIX3 1 0.814000 0.517000 0.267000 40.42320 1 MTRIX1 2 -0.508000 -0.359000 -0.783000 -74.90893 1 MTRIX2 2 0.319000 0.766000 -0.558000 16.28102 1 MTRIX3 2 0.800000 -0.534000 -0.275000 39.89122 1