HEADER OXIDOREDUCTASE 07-SEP-07 2VBB TITLE ISOPENICILLIN N SYNTHASE WITH SUBSTRATE ANALOGUE ACOMP (35MINUTES TITLE 2 OXYGEN EXPOSURE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPNS, ISOPENICILLIN N SYNTHASE; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMERICELLA NIDULANS (STRAIN FGSC A4 / ATCC SOURCE 3 38163 / CBS 112.46 / NRRL 194 / M139); SOURCE 4 ORGANISM_COMMON: ASPERGILLUS NIDULANS; SOURCE 5 ORGANISM_TAXID: 227321; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: NM554; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PJB703 KEYWDS OXIDOREDUCTASE, ANTIBIOTIC BIOSYNTHESIS, PENICILLIN BIOSYNTHESIS, KEYWDS 2 IRON, OXYGENASE, VITAMIN C, METAL-BINDING, MONOCYCLIC INTERMEDIATE, KEYWDS 3 B-LACTAM ANTIBIOTIC EXPDTA X-RAY DIFFRACTION AUTHOR W.GE,I.J.CLIFTON,R.M.ADLINGTON,J.E.BALDWIN,P.J.RUTLEDGE REVDAT 6 08-MAY-24 2VBB 1 SOURCE REVDAT 5 13-DEC-23 2VBB 1 LINK REVDAT 4 13-JUL-11 2VBB 1 VERSN REVDAT 3 24-FEB-09 2VBB 1 VERSN REVDAT 2 12-AUG-08 2VBB 1 JRNL REMARK REVDAT 1 29-JUL-08 2VBB 0 JRNL AUTH W.GE,I.J.CLIFTON,J.E.STOK,R.M.ADLINGTON,J.E.BALDWIN, JRNL AUTH 2 P.J.RUTLEDGE JRNL TITL ISOPENICILLIN N SYNTHASE MEDIATES THIOLATE OXIDATION TO JRNL TITL 2 SULFENATE IN A DEPSIPEPTIDE SUBSTRATE ANALOGUE: IMPLICATIONS JRNL TITL 3 FOR OXYGEN BINDING AND A LINK TO NITRILE HYDRATASE? JRNL REF J.AM.CHEM.SOC. V. 130 10096 2008 JRNL REFN ISSN 0002-7863 JRNL PMID 18620394 JRNL DOI 10.1021/JA8005397 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 63539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2637 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4257 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 188 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2645 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 447 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 12.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : 0.47000 REMARK 3 B33 (A**2) : -0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.595 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2777 ; 0.032 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1855 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3779 ; 2.557 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4495 ; 1.128 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 330 ; 6.603 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;30.885 ;24.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 432 ;11.047 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;14.199 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 394 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3111 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 571 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 577 ; 0.254 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2004 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1412 ; 0.198 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1426 ; 0.096 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 323 ; 0.222 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.262 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 63 ; 0.309 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 43 ; 0.178 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2079 ; 1.359 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2677 ; 1.581 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1342 ; 3.042 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1101 ; 4.255 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 8 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5050 42.8460 -7.2080 REMARK 3 T TENSOR REMARK 3 T11: 0.0388 T22: 0.2113 REMARK 3 T33: 0.1558 T12: 0.0493 REMARK 3 T13: -0.0955 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 48.5870 L22: 40.5780 REMARK 3 L33: 18.1045 L12: -6.0987 REMARK 3 L13: -11.8790 L23: 19.2583 REMARK 3 S TENSOR REMARK 3 S11: 0.3957 S12: 1.2370 S13: 0.8006 REMARK 3 S21: -0.5128 S22: -1.1122 S23: 0.5780 REMARK 3 S31: 0.4513 S32: -2.4307 S33: 0.7164 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1660 32.0870 -17.5160 REMARK 3 T TENSOR REMARK 3 T11: 0.0649 T22: 0.0867 REMARK 3 T33: 0.0170 T12: -0.0091 REMARK 3 T13: -0.0194 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.4929 L22: 1.1352 REMARK 3 L33: 2.0993 L12: 0.1228 REMARK 3 L13: -0.6035 L23: -0.4826 REMARK 3 S TENSOR REMARK 3 S11: -0.0677 S12: 0.1637 S13: -0.0038 REMARK 3 S21: -0.1144 S22: 0.0145 S23: -0.0020 REMARK 3 S31: 0.0712 S32: -0.1189 S33: 0.0531 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 79 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5100 24.8900 12.3300 REMARK 3 T TENSOR REMARK 3 T11: 0.0368 T22: 0.0495 REMARK 3 T33: 0.0026 T12: 0.0041 REMARK 3 T13: 0.0021 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.3441 L22: 0.7829 REMARK 3 L33: 2.1565 L12: 0.3503 REMARK 3 L13: 0.6990 L23: 1.0140 REMARK 3 S TENSOR REMARK 3 S11: 0.0280 S12: -0.0864 S13: -0.0283 REMARK 3 S21: 0.1033 S22: -0.0042 S23: 0.0017 REMARK 3 S31: 0.1347 S32: -0.0739 S33: -0.0238 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 80 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9420 32.1980 12.9920 REMARK 3 T TENSOR REMARK 3 T11: 0.0317 T22: 0.0577 REMARK 3 T33: 0.0080 T12: 0.0051 REMARK 3 T13: -0.0167 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 1.2368 L22: 0.4552 REMARK 3 L33: 1.0088 L12: -0.2483 REMARK 3 L13: -0.6245 L23: 0.2790 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: -0.2401 S13: 0.0767 REMARK 3 S21: 0.0471 S22: 0.0327 S23: -0.0332 REMARK 3 S31: -0.0488 S32: 0.1120 S33: -0.0265 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 115 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5700 27.6140 9.9390 REMARK 3 T TENSOR REMARK 3 T11: 0.0524 T22: 0.0745 REMARK 3 T33: 0.0276 T12: 0.0092 REMARK 3 T13: -0.0227 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 2.2293 L22: 1.7433 REMARK 3 L33: 0.8871 L12: 0.8358 REMARK 3 L13: -0.3722 L23: 0.1059 REMARK 3 S TENSOR REMARK 3 S11: 0.0440 S12: -0.2121 S13: 0.0439 REMARK 3 S21: 0.1728 S22: -0.0251 S23: -0.0810 REMARK 3 S31: 0.0004 S32: 0.1148 S33: -0.0189 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2820 25.9090 -4.9310 REMARK 3 T TENSOR REMARK 3 T11: 0.0187 T22: 0.0258 REMARK 3 T33: -0.0017 T12: -0.0033 REMARK 3 T13: 0.0003 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.4801 L22: 1.0214 REMARK 3 L33: 1.9388 L12: -0.0207 REMARK 3 L13: 0.0429 L23: -0.6720 REMARK 3 S TENSOR REMARK 3 S11: -0.0237 S12: 0.0310 S13: -0.0141 REMARK 3 S21: -0.0456 S22: 0.0123 S23: -0.0030 REMARK 3 S31: 0.0951 S32: 0.0031 S33: 0.0113 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 167 A 175 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4070 33.5420 -15.2330 REMARK 3 T TENSOR REMARK 3 T11: 0.0365 T22: 0.0914 REMARK 3 T33: 0.0023 T12: -0.0066 REMARK 3 T13: 0.0059 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 0.8058 L22: 1.4659 REMARK 3 L33: 3.3740 L12: -0.2578 REMARK 3 L13: 1.2543 L23: -1.8036 REMARK 3 S TENSOR REMARK 3 S11: 0.0332 S12: 0.2604 S13: 0.0567 REMARK 3 S21: -0.1459 S22: -0.0708 S23: -0.0587 REMARK 3 S31: 0.0306 S32: 0.3375 S33: 0.0376 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 176 A 190 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1250 30.6650 3.3960 REMARK 3 T TENSOR REMARK 3 T11: 0.0180 T22: 0.0258 REMARK 3 T33: -0.0006 T12: 0.0050 REMARK 3 T13: -0.0188 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 5.1215 L22: 0.6663 REMARK 3 L33: 2.4683 L12: -0.5022 REMARK 3 L13: -2.7297 L23: 0.4330 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: -0.0185 S13: 0.1001 REMARK 3 S21: -0.0085 S22: -0.0032 S23: -0.0107 REMARK 3 S31: 0.0106 S32: 0.0026 S33: -0.0052 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 191 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): -4.4550 42.8450 14.1600 REMARK 3 T TENSOR REMARK 3 T11: 0.1022 T22: 0.0858 REMARK 3 T33: 0.0715 T12: 0.0214 REMARK 3 T13: 0.0042 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 0.9582 L22: 9.0315 REMARK 3 L33: 2.6106 L12: 0.4898 REMARK 3 L13: -0.3480 L23: -3.8486 REMARK 3 S TENSOR REMARK 3 S11: 0.0155 S12: -0.1136 S13: 0.1038 REMARK 3 S21: 0.6725 S22: 0.0294 S23: -0.0195 REMARK 3 S31: -0.3910 S32: -0.1837 S33: -0.0449 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 209 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): 5.7800 39.4810 -2.1470 REMARK 3 T TENSOR REMARK 3 T11: 0.0325 T22: 0.0435 REMARK 3 T33: 0.0252 T12: 0.0091 REMARK 3 T13: -0.0124 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.9181 L22: 0.6357 REMARK 3 L33: 0.7773 L12: -0.0447 REMARK 3 L13: -0.3954 L23: 0.1165 REMARK 3 S TENSOR REMARK 3 S11: 0.0405 S12: 0.0290 S13: 0.1169 REMARK 3 S21: -0.0398 S22: -0.0379 S23: 0.0723 REMARK 3 S31: -0.0936 S32: -0.0989 S33: -0.0026 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 291 A 305 REMARK 3 ORIGIN FOR THE GROUP (A): 21.7830 47.1040 -17.9410 REMARK 3 T TENSOR REMARK 3 T11: 0.1530 T22: 0.0749 REMARK 3 T33: 0.0314 T12: 0.0009 REMARK 3 T13: 0.0284 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 4.1025 L22: 3.3639 REMARK 3 L33: 12.1620 L12: -2.5341 REMARK 3 L13: 5.2840 L23: -5.7573 REMARK 3 S TENSOR REMARK 3 S11: -0.0613 S12: 0.3698 S13: 0.1101 REMARK 3 S21: -0.0172 S22: -0.0269 S23: -0.0611 REMARK 3 S31: -0.6722 S32: 0.2584 S33: 0.0882 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 306 A 331 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7160 46.1550 0.8030 REMARK 3 T TENSOR REMARK 3 T11: 0.0812 T22: 0.0477 REMARK 3 T33: 0.0912 T12: -0.0207 REMARK 3 T13: -0.0006 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.5715 L22: 0.8412 REMARK 3 L33: 0.9101 L12: -0.4336 REMARK 3 L13: 0.1334 L23: 0.0181 REMARK 3 S TENSOR REMARK 3 S11: 0.0612 S12: -0.0742 S13: 0.1720 REMARK 3 S21: 0.0116 S22: -0.0276 S23: -0.0759 REMARK 3 S31: -0.1913 S32: 0.0943 S33: -0.0336 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VBB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1290033720. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : SI (1 1 1) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66244 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 27.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 1BK0 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M LITHIUM SULPHATE, 76MM TRIS/HCL, REMARK 280 PH 8.5, 2.0MM FERROUS SULPHATE, 2.6MG/ML TRIPEPTIDE, 25MG/ML IPNS REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.32750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.38150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.52050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.38150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.32750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.52050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2090 O HOH A 2211 1.67 REMARK 500 OE1 GLU A 167 O HOH A 2263 1.76 REMARK 500 O HOH A 2321 O HOH A 2323 1.91 REMARK 500 O HOH A 2160 O HOH A 2289 2.00 REMARK 500 NE2 GLN A 318 O HOH A 2415 2.01 REMARK 500 O HOH A 2007 O HOH A 2343 2.02 REMARK 500 O1 GOL A 1336 O HOH A 2447 2.04 REMARK 500 O HOH A 2033 O HOH A 2037 2.11 REMARK 500 OD1 ASN A 227 O HOH A 2321 2.11 REMARK 500 O HOH A 2344 O HOH A 2345 2.12 REMARK 500 O HOH A 2288 O HOH A 2289 2.14 REMARK 500 O HOH A 2393 O HOH A 2394 2.18 REMARK 500 O HOH A 2262 O HOH A 2263 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 68 CD GLU A 68 OE2 -0.104 REMARK 500 GLU A 81 CG GLU A 81 CD 0.105 REMARK 500 GLU A 101 CD GLU A 101 OE2 -0.073 REMARK 500 LYS A 120 CD LYS A 120 CE 0.220 REMARK 500 LYS A 120 CE LYS A 120 NZ 0.221 REMARK 500 GLU A 167 CG GLU A 167 CD 0.101 REMARK 500 LYS A 176 CD LYS A 176 CE 0.168 REMARK 500 ASP A 179 CB ASP A 179 CG -0.194 REMARK 500 TYR A 189 CE1 TYR A 189 CZ -0.108 REMARK 500 GLU A 212 CG GLU A 212 CD 0.092 REMARK 500 GLU A 212 CD GLU A 212 OE1 0.097 REMARK 500 GLU A 212 CD GLU A 212 OE2 0.078 REMARK 500 GLU A 215 CD GLU A 215 OE2 0.084 REMARK 500 SER A 226 CB SER A 226 OG -0.116 REMARK 500 GLU A 243 CB GLU A 243 CG -0.115 REMARK 500 GLU A 243 CG GLU A 243 CD 0.093 REMARK 500 TYR A 264 CZ TYR A 264 OH 0.114 REMARK 500 LYS A 273 CE LYS A 273 NZ 0.151 REMARK 500 GLU A 278 CD GLU A 278 OE1 -0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 25 CD - CE - NZ ANGL. DEV. = -14.1 DEGREES REMARK 500 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 72 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 76 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 LYS A 120 CD - CE - NZ ANGL. DEV. = 27.9 DEGREES REMARK 500 GLU A 125 OE1 - CD - OE2 ANGL. DEV. = 7.4 DEGREES REMARK 500 PHE A 141 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 173 CD - NE - CZ ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG A 173 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 173 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 173 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 LYS A 176 CD - CE - NZ ANGL. DEV. = 20.7 DEGREES REMARK 500 ASP A 179 CB - CG - OD1 ANGL. DEV. = 9.1 DEGREES REMARK 500 TYR A 189 CG - CD2 - CE2 ANGL. DEV. = -5.3 DEGREES REMARK 500 TYR A 264 CG - CD2 - CE2 ANGL. DEV. = 4.9 DEGREES REMARK 500 GLU A 278 OE1 - CD - OE2 ANGL. DEV. = 9.1 DEGREES REMARK 500 ARG A 279 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 300 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 300 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -108.61 -99.14 REMARK 500 HIS A 82 64.70 -110.37 REMARK 500 LYS A 97 -43.48 -135.46 REMARK 500 THR A 123 -5.53 79.57 REMARK 500 ASN A 230 -26.10 -158.03 REMARK 500 ASP A 245 100.73 -160.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A1333 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 94.8 REMARK 620 3 HIS A 270 NE2 82.9 89.0 REMARK 620 4 VAZ A1332 SAQ 91.8 168.1 101.7 REMARK 620 5 VAZ A1332 SAR 91.3 78.3 165.6 91.7 REMARK 620 6 VAZ A1332 OAG 99.4 110.5 160.0 58.5 34.1 REMARK 620 7 HOH A2314 O 174.9 87.1 92.5 87.2 93.7 84.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VAZ A1332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A1333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1336 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HB4 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (OXYGEN EXPOSED REMARK 900 PRODUCT FROM ANAEROBIC ACOV FE COMPLEX) REMARK 900 RELATED ID: 1BLZ RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (ACV-FE-NO REMARK 900 COMPLEX) REMARK 900 RELATED ID: 1OC1 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE AMINOADIPOYL-CYSTEINYL -AMINOBUTYRATE-FE REMARK 900 COMPLEX REMARK 900 RELATED ID: 1W3V RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE D-(L-A-AMINOADIPOYL )-(3R)-METHYL-L- REMARK 900 CYSTEINE D-A- HYDROXYISOVALERYL ESTER COMPLEX (ANAEROBIC) REMARK 900 RELATED ID: 1UZW RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE WITH L-D-(A- AMINOADIPOYL)-L-CYSTEINYL-D- REMARK 900 ISODEHYDROVALINE REMARK 900 RELATED ID: 1IPS RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (MANGANESE REMARK 900 COMPLEX) REMARK 900 RELATED ID: 1BK0 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (ACV-FE COMPLEX) REMARK 900 RELATED ID: 1W3X RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE D-(L-A-AMINOADIPOYL )-(3R)-METHYL-L- REMARK 900 CYSTEINE D-A- HYDROXYISOVALERYL ESTER COMPLEX (OXYGEN EXPOSED 5 REMARK 900 MINUTES 20 BAR) REMARK 900 RELATED ID: 2VBP RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE WITH SUBSTRATE ANALOGUE L,L,L-ACAB REMARK 900 (UNEXPOSED) REMARK 900 RELATED ID: 1HB3 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (OXYGEN EXPOSED REMARK 900 PRODUCT FROM ANAEROBIC ACOV FE COMPLEX) REMARK 900 RELATED ID: 1W04 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE AMINOADIPOYL-CYSTEINYL -GLYCINE-FE-NO REMARK 900 COMPLEX REMARK 900 RELATED ID: 1QIQ RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (ACMC FE COMPLEX) REMARK 900 RELATED ID: 1QJF RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (MONOCYCLIC REMARK 900 SULFOXIDE - FE COMPLEX) REMARK 900 RELATED ID: 2BU9 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE COMPLEXED WITH L- AMINOADIPOYL-L-CYSTEINYL- REMARK 900 L-HEXAFLUOROVALINE REMARK 900 RELATED ID: 1OBN RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE AMINOADIPOYL-CYSTEINYL -AMINOBUTYRATE-FE- REMARK 900 NO COMPLEX REMARK 900 RELATED ID: 1ODM RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (ANAEROBIC AC- REMARK 900 VINYLGLYCINE FE COMPLEX ) REMARK 900 RELATED ID: 2VBD RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE WITH SUBSTRATE ANALOGUE L,L,L-ACOMP REMARK 900 (UNEXPOSED) REMARK 900 RELATED ID: 2VCM RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE WITH SUBSTRATE ANALOGUE ASMCOV REMARK 900 RELATED ID: 1ODN RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (OXYGEN-EXPOSED REMARK 900 PRODUCT FROM ANAEROBIC AC-VINYLGLYCINE FE COMPLEX) REMARK 900 RELATED ID: 1HB2 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (OXYGEN EXPOSED REMARK 900 PRODUCT FROM ANAEROBIC ACOV FE COMPLEX) REMARK 900 RELATED ID: 1QJE RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (IPN - FE REMARK 900 COMPLEX) REMARK 900 RELATED ID: 2VAU RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE WITH SUBSTRATE ANALOGUE ACOMP (UNEXPOSED) REMARK 900 RELATED ID: 2VE1 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE WITH SUBSTRATE ANALOGUE ASMCOV (OXYGEN REMARK 900 EXPOSED 1MIN 20BAR) REMARK 900 RELATED ID: 1W03 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE AMINOADIPOYL-CYSTEINYL -GLYCINE-FE COMPLEX REMARK 900 RELATED ID: 1W06 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE AMINOADIPOYL-CYSTEINYL -ALANINE-FE NO REMARK 900 COMPLEX REMARK 900 RELATED ID: 1HB1 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (ANAEROBIC ACOV REMARK 900 FE COMPLEX) REMARK 900 RELATED ID: 2IVJ RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (ANAEROBIC AC- REMARK 900 CYCLOPROPYLGLYCINE FE COMPLEX) REMARK 900 RELATED ID: 1W05 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE AMINOADIPOYL-CYSTEINYL -ALANINE-FE COMPLEX REMARK 900 RELATED ID: 2JB4 RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE WITH A 2- THIABICYCLOHEPTAN-6-ONE PRODUCT REMARK 900 ANALOGUE REMARK 900 RELATED ID: 2IVI RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (ANAEROBIC AC- REMARK 900 METHYL-CYCLOPROPYLGLYCINE FE COMPLEX) REMARK 900 RELATED ID: 2BJS RELATED DB: PDB REMARK 900 ISOPENICILLIN N SYNTHASE C-TERMINAL TRUNCATION MUTANT REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 1-2 NOT SEEN DBREF 2VBB A 1 331 UNP P05326 IPNS_EMENI 1 331 SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE HIS ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET VAZ A1332 27 HET FE2 A1333 1 HET SO4 A1334 5 HET SO4 A1335 5 HET GOL A1336 6 HETNAM VAZ N^6^-{(1R)-2-{[(1S,2R)-1-CARBOXY-2-HYDROXY-2- HETNAM 2 VAZ (METHYLSULFANYL)ETHYL]OXY}-1-[(OXIDOSULFANYL)METHYL]- HETNAM 3 VAZ 2-OXOETHYL}-6-OXO-L-LYSINE HETNAM FE2 FE (II) ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN VAZ (S)-2-AMINO-6-((R)-1-((1S,2S)-1-CARBOXY-2-HYDROXY-2- HETSYN 2 VAZ (METHYLTHIO)ETHOXY)-3-HYDROSULFINYL-1-OXOPROPAN-2- HETSYN 3 VAZ YLAMINO)-6-OXOHEXANOIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 VAZ C13 H22 N2 O9 S2 FORMUL 3 FE2 FE 2+ FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *447(H2 O) HELIX 1 1 SER A 15 GLY A 19 5 5 HELIX 2 2 ASP A 21 ASP A 38 1 18 HELIX 3 3 ASN A 50 ILE A 65 1 16 HELIX 4 4 THR A 66 ALA A 74 1 9 HELIX 5 5 HIS A 114 ALA A 119 1 6 HELIX 6 6 GLY A 137 LEU A 164 1 28 HELIX 7 7 PHE A 171 PHE A 175 5 5 HELIX 8 8 PRO A 196 ILE A 200 5 5 HELIX 9 9 GLY A 254 THR A 261 1 8 HELIX 10 10 SER A 312 GLY A 329 1 18 SHEET 1 AA 8 LYS A 11 ASP A 13 0 SHEET 2 AA 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA 8 TYR A 249 CYS A 253 -1 O TYR A 249 N ALA A 44 SHEET 4 AA 8 ILE A 220 GLN A 225 -1 O THR A 221 N ASN A 252 SHEET 5 AA 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA 8 SER A 183 TYR A 189 -1 O SER A 183 N PHE A 285 SHEET 7 AA 8 GLU A 101 TYR A 105 -1 O GLU A 101 N ARG A 188 SHEET 8 AA 8 GLY A 89 TYR A 91 -1 O GLY A 89 N CYS A 104 SHEET 1 AB 5 LYS A 201 THR A 202 0 SHEET 2 AB 5 LYS A 208 HIS A 214 -1 O LEU A 209 N LYS A 201 SHEET 3 AB 5 HIS A 270 LYS A 273 -1 O HIS A 270 N HIS A 214 SHEET 4 AB 5 LEU A 231 THR A 235 -1 O GLN A 232 N ARG A 271 SHEET 5 AB 5 GLY A 238 ASP A 241 -1 O GLY A 238 N THR A 235 LINK NE2 HIS A 214 FE FE2 A1333 1555 1555 2.18 LINK OD1 ASP A 216 FE FE2 A1333 1555 1555 2.11 LINK NE2 HIS A 270 FE FE2 A1333 1555 1555 2.20 LINK SAQ VAZ A1332 FE FE2 A1333 1555 1555 2.51 LINK SAR VAZ A1332 FE FE2 A1333 1555 1555 2.38 LINK OAG VAZ A1332 FE FE2 A1333 1555 1555 2.08 LINK FE FE2 A1333 O HOH A2314 1555 1555 2.13 CISPEP 1 ASP A 193 PRO A 194 0 5.86 SITE 1 AC1 23 ARG A 87 TYR A 91 SER A 183 ILE A 187 SITE 2 AC1 23 TYR A 189 PHE A 211 HIS A 214 ASP A 216 SITE 3 AC1 23 GLN A 225 LEU A 231 HIS A 270 VAL A 272 SITE 4 AC1 23 SER A 281 PHE A 285 FE2 A1333 HOH A2314 SITE 5 AC1 23 HOH A2433 HOH A2436 HOH A2437 HOH A2438 SITE 6 AC1 23 HOH A2439 HOH A2440 HOH A2441 SITE 1 AC2 5 HIS A 214 ASP A 216 HIS A 270 VAZ A1332 SITE 2 AC2 5 HOH A2314 SITE 1 AC3 9 ARG A 53 ASP A 140 PHE A 141 HOH A2223 SITE 2 AC3 9 HOH A2233 HOH A2442 HOH A2443 HOH A2444 SITE 3 AC3 9 HOH A2445 SITE 1 AC4 4 ALA A 24 ARG A 27 LYS A 80 HOH A2446 SITE 1 AC5 6 ALA A 119 THR A 121 PRO A 122 TYR A 290 SITE 2 AC5 6 HOH A2327 HOH A2447 CRYST1 46.655 71.041 100.763 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021434 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014076 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009924 0.00000