HEADER TRANSFERASE 20-SEP-07 2VCE TITLE CHARACTERIZATION AND ENGINEERING OF THE BIFUNCTIONAL N- AND O- TITLE 2 GLUCOSYLTRANSFERASE INVOLVED IN XENOBIOTIC METABOLISM IN PLANTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROQUINONE GLUCOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ARBUTIN SYNTHASE, UGT72B1; COMPND 5 EC: 2.4.1.218; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TUNER; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-30A KEYWDS N-GLUCOSYLTRANSFERASE, S-GLUCOSYLTRANSFERASE, GLYCOSYLTRANSFERASE, KEYWDS 2 PLANT GLYCOSYLATION, TRANSFERASE, N-GLYCOSYLATION, O-GLYCOSYLATION, KEYWDS 3 O- GLUCOSYLTRANSFERASE, UDP-GLUCOSE- DEPENDENT EXPDTA X-RAY DIFFRACTION AUTHOR M.BRAZIER-HICKS,W.A.OFFEN,M.C.GERSHATER,T.J.REVETT,E.K.LIM, AUTHOR 2 D.J.BOWLES,G.J.DAVIES,R.EDWARDS REVDAT 5 13-DEC-23 2VCE 1 REMARK REVDAT 4 24-FEB-09 2VCE 1 VERSN REVDAT 3 08-JAN-08 2VCE 1 JRNL REVDAT 2 25-DEC-07 2VCE 1 AUTHOR JRNL REVDAT 1 16-OCT-07 2VCE 0 JRNL AUTH M.BRAZIER-HICKS,W.A.OFFEN,M.C.GERSHATER,T.J.REVETT,E.K.LIM, JRNL AUTH 2 D.J.BOWLES,G.J.DAVIES,R.EDWARDS JRNL TITL CHARACTERIZATION AND ENGINEERING OF THE BIFUNCTIONAL N- AND JRNL TITL 2 O-GLUCOSYLTRANSFERASE INVOLVED IN XENOBIOTIC METABOLISM IN JRNL TITL 3 PLANTS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 20238 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 18077347 JRNL DOI 10.1073/PNAS.0706421104 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0037 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 35036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1865 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2410 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3571 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 402 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.25000 REMARK 3 B22 (A**2) : 1.10000 REMARK 3 B33 (A**2) : -1.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.144 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.951 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3786 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5170 ; 1.647 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 481 ; 6.485 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;35.699 ;23.506 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 628 ;14.419 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.503 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 591 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2848 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1898 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2557 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 370 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 71 ; 0.205 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.132 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2414 ; 1.019 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3803 ; 1.611 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1575 ; 2.574 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1356 ; 3.705 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 1-5, 251-255, 317-320 AND 477-480 ARE REMARK 3 DISORDERED REMARK 4 REMARK 4 2VCE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1290033853. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93300 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37280 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 19.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VCH REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % (W/V) PEG 3350, 0.1 M TRIS PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.16750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 251 REMARK 465 GLN A 252 REMARK 465 THR A 253 REMARK 465 GLU A 254 REMARK 465 GLU A 255 REMARK 465 ASP A 317 REMARK 465 SER A 318 REMARK 465 HIS A 319 REMARK 465 SER A 320 REMARK 465 ASN A 477 REMARK 465 GLY A 478 REMARK 465 ASN A 479 REMARK 465 HIS A 480 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 50 CB CG CD CE NZ REMARK 470 GLU A 249 CB CG CD OE1 OE2 REMARK 470 LYS A 260 CD CE NZ REMARK 470 GLN A 321 CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 405 O HOH A 2335 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 283 CB CYS A 283 SG -0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 50 -126.80 76.23 REMARK 500 PRO A 60 153.52 -49.93 REMARK 500 ASP A 117 -169.66 -105.09 REMARK 500 PHE A 345 -52.78 79.82 REMARK 500 ALA A 387 -137.37 52.41 REMARK 500 GLU A 428 -17.85 -151.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 49 LYS A 50 56.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2013 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A2020 DISTANCE = 5.90 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U2F A1477 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TC7 A1478 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1479 DBREF 2VCE A 1 480 UNP Q9M156 HQGT_ARATH 1 480 SEQRES 1 A 480 MET GLU GLU SER LYS THR PRO HIS VAL ALA ILE ILE PRO SEQRES 2 A 480 SER PRO GLY MET GLY HIS LEU ILE PRO LEU VAL GLU PHE SEQRES 3 A 480 ALA LYS ARG LEU VAL HIS LEU HIS GLY LEU THR VAL THR SEQRES 4 A 480 PHE VAL ILE ALA GLY GLU GLY PRO PRO SER LYS ALA GLN SEQRES 5 A 480 ARG THR VAL LEU ASP SER LEU PRO SER SER ILE SER SER SEQRES 6 A 480 VAL PHE LEU PRO PRO VAL ASP LEU THR ASP LEU SER SER SEQRES 7 A 480 SER THR ARG ILE GLU SER ARG ILE SER LEU THR VAL THR SEQRES 8 A 480 ARG SER ASN PRO GLU LEU ARG LYS VAL PHE ASP SER PHE SEQRES 9 A 480 VAL GLU GLY GLY ARG LEU PRO THR ALA LEU VAL VAL ASP SEQRES 10 A 480 LEU PHE GLY THR ASP ALA PHE ASP VAL ALA VAL GLU PHE SEQRES 11 A 480 HIS VAL PRO PRO TYR ILE PHE TYR PRO THR THR ALA ASN SEQRES 12 A 480 VAL LEU SER PHE PHE LEU HIS LEU PRO LYS LEU ASP GLU SEQRES 13 A 480 THR VAL SER CYS GLU PHE ARG GLU LEU THR GLU PRO LEU SEQRES 14 A 480 MET LEU PRO GLY CYS VAL PRO VAL ALA GLY LYS ASP PHE SEQRES 15 A 480 LEU ASP PRO ALA GLN ASP ARG LYS ASP ASP ALA TYR LYS SEQRES 16 A 480 TRP LEU LEU HIS ASN THR LYS ARG TYR LYS GLU ALA GLU SEQRES 17 A 480 GLY ILE LEU VAL ASN THR PHE PHE GLU LEU GLU PRO ASN SEQRES 18 A 480 ALA ILE LYS ALA LEU GLN GLU PRO GLY LEU ASP LYS PRO SEQRES 19 A 480 PRO VAL TYR PRO VAL GLY PRO LEU VAL ASN ILE GLY LYS SEQRES 20 A 480 GLN GLU ALA LYS GLN THR GLU GLU SER GLU CYS LEU LYS SEQRES 21 A 480 TRP LEU ASP ASN GLN PRO LEU GLY SER VAL LEU TYR VAL SEQRES 22 A 480 SER PHE GLY SER GLY GLY THR LEU THR CYS GLU GLN LEU SEQRES 23 A 480 ASN GLU LEU ALA LEU GLY LEU ALA ASP SER GLU GLN ARG SEQRES 24 A 480 PHE LEU TRP VAL ILE ARG SER PRO SER GLY ILE ALA ASN SEQRES 25 A 480 SER SER TYR PHE ASP SER HIS SER GLN THR ASP PRO LEU SEQRES 26 A 480 THR PHE LEU PRO PRO GLY PHE LEU GLU ARG THR LYS LYS SEQRES 27 A 480 ARG GLY PHE VAL ILE PRO PHE TRP ALA PRO GLN ALA GLN SEQRES 28 A 480 VAL LEU ALA HIS PRO SER THR GLY GLY PHE LEU THR HIS SEQRES 29 A 480 CYS GLY TRP ASN SER THR LEU GLU SER VAL VAL SER GLY SEQRES 30 A 480 ILE PRO LEU ILE ALA TRP PRO LEU TYR ALA GLU GLN LYS SEQRES 31 A 480 MET ASN ALA VAL LEU LEU SER GLU ASP ILE ARG ALA ALA SEQRES 32 A 480 LEU ARG PRO ARG ALA GLY ASP ASP GLY LEU VAL ARG ARG SEQRES 33 A 480 GLU GLU VAL ALA ARG VAL VAL LYS GLY LEU MET GLU GLY SEQRES 34 A 480 GLU GLU GLY LYS GLY VAL ARG ASN LYS MET LYS GLU LEU SEQRES 35 A 480 LYS GLU ALA ALA CYS ARG VAL LEU LYS ASP ASP GLY THR SEQRES 36 A 480 SER THR LYS ALA LEU SER LEU VAL ALA LEU LYS TRP LYS SEQRES 37 A 480 ALA HIS LYS LYS GLU LEU GLU GLN ASN GLY ASN HIS HET U2F A1477 36 HET TC7 A1478 10 HET EDO A1479 4 HETNAM U2F URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE HETNAM TC7 2,4,5-TRICHLOROPHENOL HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 U2F C15 H23 F N2 O16 P2 FORMUL 3 TC7 C6 H3 CL3 O FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *402(H2 O) HELIX 1 1 GLY A 16 GLY A 35 1 20 HELIX 2 2 SER A 49 LEU A 56 1 8 HELIX 3 3 ARG A 81 ARG A 92 1 12 HELIX 4 4 SER A 93 GLY A 107 1 15 HELIX 5 5 GLY A 120 ASP A 122 5 3 HELIX 6 6 ALA A 123 PHE A 130 1 8 HELIX 7 7 THR A 141 VAL A 158 1 18 HELIX 8 8 GLU A 161 LEU A 165 5 5 HELIX 9 9 ALA A 178 PHE A 182 5 5 HELIX 10 10 LEU A 183 GLN A 187 5 5 HELIX 11 11 ASP A 191 TYR A 204 1 14 HELIX 12 12 LYS A 205 ALA A 207 5 3 HELIX 13 13 GLU A 219 GLU A 228 1 10 HELIX 14 14 SER A 256 ASN A 264 1 9 HELIX 15 15 THR A 282 SER A 296 1 15 HELIX 16 16 ASP A 323 LEU A 328 5 6 HELIX 17 17 GLY A 331 THR A 336 1 6 HELIX 18 18 PRO A 348 HIS A 355 1 8 HELIX 19 19 GLY A 366 GLY A 377 1 12 HELIX 20 20 GLU A 388 ASP A 399 1 12 HELIX 21 21 ARG A 415 GLU A 428 1 14 HELIX 22 22 GLU A 430 LEU A 450 1 21 HELIX 23 23 GLY A 454 GLN A 476 1 23 SHEET 1 AA 7 ILE A 63 PHE A 67 0 SHEET 2 AA 7 THR A 37 ILE A 42 1 O VAL A 38 N SER A 64 SHEET 3 AA 7 HIS A 8 ILE A 12 1 O VAL A 9 N THR A 39 SHEET 4 AA 7 ALA A 113 VAL A 116 1 O ALA A 113 N ALA A 10 SHEET 5 AA 7 PRO A 134 TYR A 138 1 O TYR A 135 N VAL A 116 SHEET 6 AA 7 ILE A 210 VAL A 212 1 O LEU A 211 N TYR A 138 SHEET 7 AA 7 VAL A 236 PRO A 238 1 O TYR A 237 N VAL A 212 SHEET 1 AB 6 GLY A 340 PRO A 344 0 SHEET 2 AB 6 ARG A 299 ILE A 304 1 O PHE A 300 N PHE A 341 SHEET 3 AB 6 VAL A 270 SER A 274 1 O LEU A 271 N LEU A 301 SHEET 4 AB 6 THR A 358 THR A 363 1 N GLY A 359 O VAL A 270 SHEET 5 AB 6 LEU A 380 ALA A 382 1 O ILE A 381 N THR A 363 SHEET 6 AB 6 ALA A 403 LEU A 404 1 O LEU A 404 N ALA A 382 CISPEP 1 GLY A 240 PRO A 241 0 -0.47 SITE 1 AC1 23 GLY A 18 ILE A 21 PRO A 139 GLY A 276 SITE 2 AC1 23 SER A 277 VAL A 303 TRP A 346 ALA A 347 SITE 3 AC1 23 GLN A 349 HIS A 364 GLY A 366 TRP A 367 SITE 4 AC1 23 ASN A 368 SER A 369 GLU A 372 TYR A 386 SITE 5 AC1 23 ALA A 387 GLU A 388 GLN A 389 TC7 A1478 SITE 6 AC1 23 HOH A2008 HOH A2253 HOH A2402 SITE 1 AC2 10 HIS A 19 GLU A 83 LEU A 118 PHE A 119 SITE 2 AC2 10 LEU A 183 PRO A 185 TYR A 315 ALA A 387 SITE 3 AC2 10 GLU A 388 U2F A1477 SITE 1 AC3 9 PHE A 275 THR A 280 LEU A 281 LEU A 286 SITE 2 AC3 9 TRP A 302 VAL A 303 ILE A 304 ARG A 305 SITE 3 AC3 9 HOH A2403 CRYST1 47.807 94.335 57.059 90.00 110.31 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020917 0.000000 0.007742 0.00000 SCALE2 0.000000 0.010601 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018688 0.00000