HEADER TRANSFERASE 19-OCT-07 2VED TITLE CRYSTAL STRUCTURE OF THE CHIMERICAL MUTANT CAPABK55M PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE PROTEIN CAPA1, PROTEIN TYROSINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: THE LAST 29AA FROM CAPA1, RESIDUES 197-222,; COMPND 5 SYNONYM: CHIMERICAL PROTEIN CAPAB, CAP5A; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: BOUND ADP AND MG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: CAPA1, CAPB2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS CO-POLYMERASE, ACTIVATION MECHANISM, CHIMERA, TRANSFERASE, BACTERIAL KEYWDS 2 TYROSINE-KINASE, EXOPOLYSACCHARIDE SYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR V.OLIVARES-ILLANA,P.MEYER,V.GUEGUEN-CHAIGNON,D.SOULAT,J.DEUSTCHER, AUTHOR 2 A.J.COZZONE,S.MORERA,C.GRANGEASSE,S.NESSLER REVDAT 3 13-DEC-23 2VED 1 LINK REVDAT 2 24-FEB-09 2VED 1 VERSN REVDAT 1 01-JUL-08 2VED 0 JRNL AUTH V.OLIVARES-ILLANA,P.MEYER,E.BECHET,V.GUEGUEN-CHAIGNON, JRNL AUTH 2 D.SOULAT,S.LAZEREG-RIQUIER,I.MIJAKOVIC,J.DEUTSCHER, JRNL AUTH 3 A.J.COZZONE,O.LAPREVOTE,S.MORERA,C.GRANGEASSE,S.NESSLER JRNL TITL STRUCTURAL BASIS FOR THE REGULATION MECHANISM OF THE JRNL TITL 2 TYROSINE KINASE CAPB FROM STAPHYLOCOCCUS AUREUS. JRNL REF PLOS BIOL. V. 6 E143 2008 JRNL REFN ISSN 1544-9173 JRNL PMID 18547145 JRNL DOI 10.1371/JOURNAL.PBIO.0060143 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1164 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1516 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3923 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.457 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.307 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.241 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.616 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.854 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4053 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5519 ; 1.870 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 504 ; 9.073 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;39.091 ;25.607 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 694 ;18.061 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.341 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 639 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3014 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1968 ; 0.238 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2850 ; 0.321 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 195 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.198 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.190 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2584 ; 0.907 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4117 ; 1.556 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1661 ; 2.021 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1402 ; 3.283 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2VED COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1290034188. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23263 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ION REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG1000 100MM HEPES PH7.5 200MM REMARK 280 GLYCINE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 81.60000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 81.60000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.60000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 81.60000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 81.60000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.60000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 81.60000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 81.60000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 28.60000 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 81.60000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 81.60000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 28.60000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 15940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 91770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LYS 55 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN B, LYS 55 TO MET REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 182 REMARK 465 ARG A 183 REMARK 465 GLY A 184 REMARK 465 SER A 185 REMARK 465 HIS A 186 REMARK 465 HIS A 187 REMARK 465 HIS A 188 REMARK 465 HIS A 189 REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 465 GLY A 192 REMARK 465 SER A 193 REMARK 465 VAL A 194 REMARK 465 ILE A 195 REMARK 465 PHE A 196 REMARK 465 THR A 1227 REMARK 465 ASP A 1228 REMARK 465 GLU A 1229 REMARK 465 SER A 1230 REMARK 465 MET B 182 REMARK 465 ARG B 183 REMARK 465 GLY B 184 REMARK 465 SER B 185 REMARK 465 HIS B 186 REMARK 465 HIS B 187 REMARK 465 HIS B 188 REMARK 465 HIS B 189 REMARK 465 HIS B 190 REMARK 465 HIS B 191 REMARK 465 GLY B 192 REMARK 465 SER B 193 REMARK 465 VAL B 194 REMARK 465 ILE B 195 REMARK 465 PHE B 196 REMARK 465 GLU B 1229 REMARK 465 SER B 1230 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ASP A 197 O HOH A 2001 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1038 105.15 56.82 REMARK 500 SER A1039 132.66 76.87 REMARK 500 LYS A1072 91.28 -59.50 REMARK 500 ASN A1090 65.60 37.79 REMARK 500 ILE A1127 106.92 -54.84 REMARK 500 ASP A1166 -54.17 -27.85 REMARK 500 ASN A1185 101.14 -164.80 REMARK 500 LYS A1215 62.79 87.18 REMARK 500 LYS A1217 20.75 32.48 REMARK 500 ALA A1219 82.97 58.71 REMARK 500 LYS B 201 -73.03 159.74 REMARK 500 GLN B 219 107.87 24.39 REMARK 500 PHE B 221 104.75 -51.26 REMARK 500 ASN B 222 -166.55 -102.61 REMARK 500 ARG B1006 97.49 34.39 REMARK 500 LEU B1011 58.56 -92.31 REMARK 500 ALA B1035 -1.89 -58.00 REMARK 500 ASN B1036 81.17 -159.81 REMARK 500 ASP B1038 -51.93 84.81 REMARK 500 ARG B1081 -44.59 -139.37 REMARK 500 ASN B1090 68.96 60.32 REMARK 500 GLU B1115 1.05 -64.05 REMARK 500 THR B1136 34.58 -80.26 REMARK 500 LYS B1188 -53.72 -3.81 REMARK 500 LYS B1215 11.51 -64.91 REMARK 500 ASP B1216 -82.45 28.10 REMARK 500 LYS B1217 50.77 -108.72 REMARK 500 SER B1220 19.92 -162.45 REMARK 500 TYR B1221 -70.44 25.52 REMARK 500 THR B1227 84.65 43.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 1218 ALA A 1219 31.34 REMARK 500 ILE B 200 LYS B 201 -48.23 REMARK 500 ILE B 218 GLN B 219 90.94 REMARK 500 SER B 1220 TYR B 1221 61.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2228 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A1056 OG REMARK 620 2 ADP A2227 O2B 76.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2230 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B1056 OG REMARK 620 2 ADP B2229 O2B 63.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A2227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B2229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A2228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B2230 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS IS A CHIMERICAL PROTEIN COMPOSED OF THE 29AA OF REMARK 999 THE C-TERMINAL DOMAIN OF CAPA1 (RESIDUE NAME FROM 197 TO 222) REMARK 999 IN FUSION WITH CAPB2 PROTEIN. THERE ARE TWO CHIMERICAL PROTEINS REMARK 999 IN THE ASYMMETRIC UNIT DBREF 2VED A 182 196 PDB 2VED 2VED 182 196 DBREF 2VED A 197 222 UNP A8YPQ6 A8YPQ6_STAAU 197 222 DBREF 2VED A 1001 1230 UNP A8YPQ5 A8YPQ5_STAAU 1 230 DBREF 2VED B 182 196 PDB 2VED 2VED 182 196 DBREF 2VED B 197 222 UNP A8YPQ6 A8YPQ6_STAAU 197 222 DBREF 2VED B 1001 1230 UNP A8YPQ5 A8YPQ5_STAAU 1 230 SEQADV 2VED MET A 1055 UNP A8YPQ5 LYS 55 ENGINEERED MUTATION SEQADV 2VED MET B 1055 UNP A8YPQ5 LYS 55 ENGINEERED MUTATION SEQRES 1 A 271 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER VAL SEQRES 2 A 271 ILE PHE ASP LYS ARG ILE LYS ASP GLU GLU ASP VAL GLU SEQRES 3 A 271 LYS GLU LEU GLY LEU PRO VAL LEU GLY SER ILE GLN LYS SEQRES 4 A 271 PHE ASN MET THR ASN THR ARG ARG SER THR SER SER LEU SEQRES 5 A 271 ILE VAL HIS GLU GLN PRO LYS SER PRO ILE SER GLU LYS SEQRES 6 A 271 PHE ARG GLY ILE ARG SER ASN ILE MET PHE ALA ASN PRO SEQRES 7 A 271 ASP SER ALA VAL GLN SER ILE VAL ILE THR SER GLU ALA SEQRES 8 A 271 PRO GLY ALA GLY MET SER THR ILE ALA ALA ASN LEU ALA SEQRES 9 A 271 VAL ALA TYR ALA GLN ALA GLY TYR LYS THR LEU ILE VAL SEQRES 10 A 271 ASP GLY ASP MET ARG LYS PRO THR GLN HIS TYR ILE PHE SEQRES 11 A 271 ASN LEU PRO ASN ASN GLU GLY LEU SER SER LEU LEU LEU SEQRES 12 A 271 ASN TRP SER THR TYR GLN ASP SER ILE ILE SER THR GLU SEQRES 13 A 271 ILE GLU ASP LEU ASP VAL LEU THR SER GLY PRO ILE PRO SEQRES 14 A 271 PRO ASN PRO SER GLU LEU ILE THR SER ARG ALA PHE ALA SEQRES 15 A 271 ASN LEU TYR ASP THR LEU LEU MET ASN TYR ASN PHE VAL SEQRES 16 A 271 ILE ILE ASP THR PRO PRO VAL ASN THR VAL THR ASP ALA SEQRES 17 A 271 GLN LEU PHE SER LYS PHE THR GLY ASN VAL VAL TYR VAL SEQRES 18 A 271 VAL ASN SER GLU ASN ASN ASN LYS ASP GLU VAL LYS LYS SEQRES 19 A 271 GLY LYS GLU LEU ILE GLU ALA THR GLY ALA LYS LEU LEU SEQRES 20 A 271 GLY VAL VAL LEU ASN ARG MET PRO LYS ASP LYS SER ALA SEQRES 21 A 271 SER TYR TYR ALA TYR TYR GLY THR ASP GLU SER SEQRES 1 B 271 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER VAL SEQRES 2 B 271 ILE PHE ASP LYS ARG ILE LYS ASP GLU GLU ASP VAL GLU SEQRES 3 B 271 LYS GLU LEU GLY LEU PRO VAL LEU GLY SER ILE GLN LYS SEQRES 4 B 271 PHE ASN MET THR ASN THR ARG ARG SER THR SER SER LEU SEQRES 5 B 271 ILE VAL HIS GLU GLN PRO LYS SER PRO ILE SER GLU LYS SEQRES 6 B 271 PHE ARG GLY ILE ARG SER ASN ILE MET PHE ALA ASN PRO SEQRES 7 B 271 ASP SER ALA VAL GLN SER ILE VAL ILE THR SER GLU ALA SEQRES 8 B 271 PRO GLY ALA GLY MET SER THR ILE ALA ALA ASN LEU ALA SEQRES 9 B 271 VAL ALA TYR ALA GLN ALA GLY TYR LYS THR LEU ILE VAL SEQRES 10 B 271 ASP GLY ASP MET ARG LYS PRO THR GLN HIS TYR ILE PHE SEQRES 11 B 271 ASN LEU PRO ASN ASN GLU GLY LEU SER SER LEU LEU LEU SEQRES 12 B 271 ASN TRP SER THR TYR GLN ASP SER ILE ILE SER THR GLU SEQRES 13 B 271 ILE GLU ASP LEU ASP VAL LEU THR SER GLY PRO ILE PRO SEQRES 14 B 271 PRO ASN PRO SER GLU LEU ILE THR SER ARG ALA PHE ALA SEQRES 15 B 271 ASN LEU TYR ASP THR LEU LEU MET ASN TYR ASN PHE VAL SEQRES 16 B 271 ILE ILE ASP THR PRO PRO VAL ASN THR VAL THR ASP ALA SEQRES 17 B 271 GLN LEU PHE SER LYS PHE THR GLY ASN VAL VAL TYR VAL SEQRES 18 B 271 VAL ASN SER GLU ASN ASN ASN LYS ASP GLU VAL LYS LYS SEQRES 19 B 271 GLY LYS GLU LEU ILE GLU ALA THR GLY ALA LYS LEU LEU SEQRES 20 B 271 GLY VAL VAL LEU ASN ARG MET PRO LYS ASP LYS SER ALA SEQRES 21 B 271 SER TYR TYR ALA TYR TYR GLY THR ASP GLU SER HET ADP A2227 27 HET MG A2228 1 HET ADP B2229 27 HET MG B2230 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *112(H2 O) HELIX 1 1 ASP A 202 GLY A 211 1 10 HELIX 2 2 LEU A 1011 GLN A 1016 1 6 HELIX 3 3 SER A 1019 ALA A 1035 1 17 HELIX 4 4 GLY A 1054 ALA A 1069 1 16 HELIX 5 5 THR A 1084 PHE A 1089 1 6 HELIX 6 6 GLY A 1096 LEU A 1102 1 7 HELIX 7 7 THR A 1106 SER A 1110 1 5 HELIX 8 8 ASN A 1130 THR A 1136 1 7 HELIX 9 9 SER A 1137 TYR A 1151 1 15 HELIX 10 10 THR A 1165 GLY A 1175 1 11 HELIX 11 11 ASN A 1187 ALA A 1200 1 14 HELIX 12 12 ASP B 202 GLY B 211 1 10 HELIX 13 13 LEU B 1011 GLN B 1016 1 6 HELIX 14 14 SER B 1019 ALA B 1035 1 17 HELIX 15 15 GLY B 1054 ALA B 1069 1 16 HELIX 16 16 THR B 1084 PHE B 1089 1 6 HELIX 17 17 GLY B 1096 LEU B 1102 1 7 HELIX 18 18 THR B 1106 ILE B 1111 1 6 HELIX 19 19 ASN B 1130 THR B 1136 1 7 HELIX 20 20 SER B 1137 TYR B 1151 1 15 HELIX 21 21 THR B 1165 GLY B 1175 1 11 HELIX 22 22 ASN B 1187 ALA B 1200 1 14 SHEET 1 AA 8 VAL A 214 GLN A 219 0 SHEET 2 AA 8 LYS A1204 MET A1213 1 O VAL A1208 N LEU A 215 SHEET 3 AA 8 ASN A1176 ASN A1182 1 O VAL A1177 N LEU A1206 SHEET 4 AA 8 SER A1043 THR A1047 1 O VAL A1045 N VAL A1178 SHEET 5 AA 8 PHE A1153 ASP A1157 1 O VAL A1154 N ILE A1044 SHEET 6 AA 8 THR A1073 ASP A1077 1 O LEU A1074 N ILE A1155 SHEET 7 AA 8 LEU A1119 LEU A1122 1 O ASP A1120 N ILE A1075 SHEET 8 AA 8 ILE A1111 SER A1113 -1 O ILE A1112 N VAL A1121 SHEET 1 BA 8 VAL B 214 GLN B 219 0 SHEET 2 BA 8 LYS B1204 MET B1213 1 O VAL B1208 N LEU B 215 SHEET 3 BA 8 ASN B1176 ASN B1182 1 O VAL B1177 N LEU B1206 SHEET 4 BA 8 SER B1043 THR B1047 1 O VAL B1045 N VAL B1178 SHEET 5 BA 8 PHE B1153 ASP B1157 1 O VAL B1154 N ILE B1044 SHEET 6 BA 8 THR B1073 ASP B1077 1 O LEU B1074 N ILE B1155 SHEET 7 BA 8 LEU B1119 LEU B1122 1 O ASP B1120 N ILE B1075 SHEET 8 BA 8 ILE B1112 SER B1113 -1 O ILE B1112 N VAL B1121 LINK OG SER A1056 MG MG A2228 1555 1555 2.00 LINK O2B ADP A2227 MG MG A2228 1555 1555 2.32 LINK OG SER B1056 MG MG B2230 1555 1555 2.41 LINK O2B ADP B2229 MG MG B2230 1555 1555 2.51 CISPEP 1 TYR A 1225 GLY A 1226 0 -17.01 CISPEP 2 ASP B 1216 LYS B 1217 0 -23.84 SITE 1 AC1 19 GLN A 219 LYS A 220 PHE A 221 SER A1010 SITE 2 AC1 19 GLY A1052 ALA A1053 GLY A1054 MET A1055 SITE 3 AC1 19 SER A1056 THR A1057 ASN A1211 ARG A1212 SITE 4 AC1 19 HOH A2056 HOH A2057 MG A2228 ASN B1103 SITE 5 AC1 19 TRP B1104 SER B1105 THR B1106 SITE 1 AC2 14 GLN B 219 LYS B 220 PHE B 221 SER B1010 SITE 2 AC2 14 GLY B1052 ALA B1053 GLY B1054 MET B1055 SITE 3 AC2 14 SER B1056 THR B1057 ASN B1211 ARG B1212 SITE 4 AC2 14 HOH B2055 MG B2230 SITE 1 AC3 2 SER A1056 ADP A2227 SITE 1 AC4 4 SER B1056 ASP B1157 THR B1158 ADP B2229 CRYST1 163.200 163.200 57.200 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006127 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006127 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017483 0.00000