HEADER HYDROLASE INHIBITOR 19-NOV-07 2VH4 TITLE STRUCTURE OF A LOOP C-SHEET SERPIN POLYMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: TENGPIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SERPIN, RESIDUES 43-423; COMPND 5 SYNONYM: SERINE PROTEASE INHIBITOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOANAEROBACTER TENGCONGENSIS; SOURCE 3 ORGANISM_TAXID: 273068; SOURCE 4 STRAIN: MB4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSSETTABLUE(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-3A KEYWDS SERPIN, C SHEET POLYMER, LATENT CONFORMATION, HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR Q.ZHANG,R.H.P.LAW,S.P.BOTTOMLEY,J.C.WHISSTOCK,A.M.BUCKLE REVDAT 7 13-DEC-23 2VH4 1 REMARK REVDAT 6 12-JUL-17 2VH4 1 REVDAT 5 13-JUL-11 2VH4 1 VERSN REVDAT 4 24-FEB-09 2VH4 1 VERSN REVDAT 3 26-FEB-08 2VH4 1 AUTHOR JRNL REVDAT 2 15-JAN-08 2VH4 1 REMARK REVDAT 1 08-JAN-08 2VH4 0 JRNL AUTH Q.ZHANG,R.H.LAW,S.P.BOTTOMLEY,J.C.WHISSTOCK,A.M.BUCKLE JRNL TITL A STRUCTURAL BASIS FOR LOOP C-SHEET POLYMERIZATION IN JRNL TITL 2 SERPINS. JRNL REF J.MOL.BIOL. V. 376 1348 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18234218 JRNL DOI 10.1016/J.JMB.2007.12.050 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 137.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 27494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1474 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1818 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5845 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 240 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.671 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.309 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.213 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.515 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.874 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5960 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8088 ; 0.989 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 751 ; 5.422 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 254 ;36.958 ;26.220 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1020 ;14.786 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;13.390 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 939 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4432 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2611 ; 0.177 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4158 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 315 ; 0.117 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 72 ; 0.182 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.132 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3865 ; 0.844 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6072 ; 1.518 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2382 ; 2.424 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2016 ; 3.547 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 96 A 103 6 REMARK 3 1 B 96 B 103 6 REMARK 3 2 A 168 A 176 6 REMARK 3 2 B 168 B 176 6 REMARK 3 3 A 316 A 327 6 REMARK 3 3 B 316 B 327 6 REMARK 3 4 A 330 A 339 6 REMARK 3 4 B 330 B 339 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 281 ; 0.22 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 281 ; 3.88 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 380 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3303 67.4681 14.5969 REMARK 3 T TENSOR REMARK 3 T11: -0.0184 T22: -0.0291 REMARK 3 T33: -0.0116 T12: -0.0041 REMARK 3 T13: 0.0111 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.4501 L22: 0.3675 REMARK 3 L33: 0.2985 L12: -0.1912 REMARK 3 L13: 0.0670 L23: -0.0530 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: 0.0053 S13: 0.0156 REMARK 3 S21: 0.0082 S22: 0.0071 S23: 0.0139 REMARK 3 S31: 0.0374 S32: 0.0383 S33: -0.0122 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 237 REMARK 3 ORIGIN FOR THE GROUP (A): 31.7095 46.2694 51.6774 REMARK 3 T TENSOR REMARK 3 T11: -0.0067 T22: 0.0044 REMARK 3 T33: -0.0340 T12: -0.0203 REMARK 3 T13: 0.0019 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.2239 L22: 0.4827 REMARK 3 L33: 0.8752 L12: 0.1989 REMARK 3 L13: -0.0003 L23: -0.3566 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: 0.0114 S13: 0.0035 REMARK 3 S21: -0.0906 S22: 0.1093 S23: 0.0199 REMARK 3 S31: 0.1022 S32: -0.0835 S33: -0.0701 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 245 B 381 REMARK 3 ORIGIN FOR THE GROUP (A): 37.3763 45.6209 58.1281 REMARK 3 T TENSOR REMARK 3 T11: 0.0111 T22: 0.0239 REMARK 3 T33: -0.0434 T12: -0.0020 REMARK 3 T13: 0.0098 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.2935 L22: 0.8160 REMARK 3 L33: 0.5223 L12: 0.3340 REMARK 3 L13: -0.0802 L23: -0.3649 REMARK 3 S TENSOR REMARK 3 S11: -0.0081 S12: -0.0371 S13: 0.0203 REMARK 3 S21: -0.0465 S22: 0.0543 S23: 0.0206 REMARK 3 S31: 0.0730 S32: 0.0220 S33: -0.0462 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VH4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-NOV-07. REMARK 100 THE DEPOSITION ID IS D_1290034458. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU-MSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28981 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 137.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.01000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.05000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2PEF REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BIS-TRIS, PH5.8, 14% (W/V) PEG REMARK 280 5000, MONOMETHYL ETHER REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.33450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 423 REMARK 465 ASP B 280 REMARK 465 GLU B 281 REMARK 465 ASN B 282 REMARK 465 ILE B 283 REMARK 465 SER B 284 REMARK 465 VAL B 285 REMARK 465 ASN B 286 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 44 NE CZ NH1 NH2 REMARK 470 LYS A 46 CE NZ REMARK 470 LYS A 156 CD CE NZ REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 LYS A 197 CE NZ REMARK 470 LYS A 201 CD CE NZ REMARK 470 VAL A 237 CG1 CG2 REMARK 470 GLU A 257 CG CD OE1 OE2 REMARK 470 GLU A 281 CG CD OE1 OE2 REMARK 470 ILE A 283 CG1 CG2 CD1 REMARK 470 SER A 284 OG REMARK 470 ASN A 286 CG OD1 ND2 REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 ILE A 289 CG1 CG2 CD1 REMARK 470 LYS A 290 CG CD CE NZ REMARK 470 LYS A 302 CD CE NZ REMARK 470 LYS A 305 CE NZ REMARK 470 ARG A 310 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 323 CG CD CE NZ REMARK 470 LYS A 341 CE NZ REMARK 470 LYS A 349 CE NZ REMARK 470 ASP A 351 CG OD1 OD2 REMARK 470 ILE A 352 CG1 CG2 CD1 REMARK 470 LEU A 397 CG CD1 CD2 REMARK 470 ILE B 45 CG1 CG2 CD1 REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 ASP B 77 CG OD1 OD2 REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 GLU B 149 CG CD OE1 OE2 REMARK 470 GLU B 225 CG CD OE1 OE2 REMARK 470 LYS B 226 CG CD CE NZ REMARK 470 GLU B 231 CG CD OE1 OE2 REMARK 470 GLU B 257 CG CD OE1 OE2 REMARK 470 GLU B 258 CG CD OE1 OE2 REMARK 470 ILE B 261 CG1 CG2 CD1 REMARK 470 GLU B 287 CG CD OE1 OE2 REMARK 470 LYS B 290 CG CD CE NZ REMARK 470 GLN B 295 NE2 REMARK 470 LYS B 305 CG CD CE NZ REMARK 470 ARG B 310 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 341 CD CE NZ REMARK 470 LYS B 349 CG CD CE NZ REMARK 470 SER B 350 OG REMARK 470 ASP B 351 CG OD1 OD2 REMARK 470 VAL B 395 CG1 CG2 REMARK 470 LEU B 397 CG CD1 CD2 REMARK 470 ASN B 398 CG OD1 ND2 REMARK 470 ARG B 399 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 76 -155.18 -141.44 REMARK 500 ASN A 101 -125.59 58.29 REMARK 500 LYS A 113 -85.97 60.52 REMARK 500 LYS A 136 -1.54 72.14 REMARK 500 SER A 137 59.77 -153.24 REMARK 500 ASN A 150 -84.53 -92.88 REMARK 500 ASP A 176 -163.27 -117.40 REMARK 500 LYS A 269 -9.84 69.89 REMARK 500 LEU A 420 167.15 68.75 REMARK 500 ASN B 101 -129.13 46.00 REMARK 500 LYS B 113 -103.29 53.36 REMARK 500 SER B 137 58.04 -155.16 REMARK 500 ASP B 151 -6.75 64.05 REMARK 500 ASP B 176 -154.56 -120.81 REMARK 500 PRO B 204 -8.34 -52.59 REMARK 500 LYS B 269 -7.79 74.78 REMARK 500 SER B 330 0.15 -68.63 REMARK 500 LEU B 397 61.90 -106.05 REMARK 500 ARG B 399 75.39 -119.95 REMARK 500 SER B 421 -13.73 70.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. DBREF 2VH4 A 43 423 UNP Q8R9P5 Q8R9P5_THETN 43 423 DBREF 2VH4 B 43 423 UNP Q8R9P5 Q8R9P5_THETN 43 423 SEQADV 2VH4 ILE A 261 UNP Q8R9P5 VAL 261 CONFLICT SEQADV 2VH4 ILE B 261 UNP Q8R9P5 VAL 261 CONFLICT SEQRES 1 A 381 ASP ARG ILE LYS ALA ASN PRO VAL SER GLU LYS ASN ILE SEQRES 2 A 381 ASP GLU LYS PHE ILE TYR ASN THR ALA ASP PHE SER ILE SEQRES 3 A 381 GLU LEU PHE LYS ASN SER ILE ASP ASP LYS GLU ASN SER SEQRES 4 A 381 LEU ILE SER PRO LEU SER ALA MET LEU ALA LEU ALA MET SEQRES 5 A 381 THR ALA ASN GLY ALA ASP ASN GLU THR LEU ALA GLN MET SEQRES 6 A 381 GLU LYS ALA LEU GLY LYS ASP ILE SER ILE GLU ASP LEU SEQRES 7 A 381 ASN LYS TYR LEU TYR THR TYR MET LYS LYS LEU PRO ASN SEQRES 8 A 381 GLU GLU LYS SER LYS LEU THR ILE ALA ASN SER ILE TRP SEQRES 9 A 381 PHE LYS GLU ASN ASP PHE MET PRO SER LYS ASP PHE LEU SEQRES 10 A 381 GLN ILE ILE ALA ASP TYR TYR LYS ALA ASP ILE PHE LYS SEQRES 11 A 381 ALA ALA PHE ASP SER SER THR VAL SER ASP ILE ASN ASN SEQRES 12 A 381 TRP VAL LYS SER LYS THR ASN GLY MET ILE ASP LYS ILE SEQRES 13 A 381 LEU ASN LYS ILE ASP PRO GLU ASP VAL MET TYR LEU ILE SEQRES 14 A 381 ASN ALA VAL ALA PHE ASP ALA GLU TRP GLU THR VAL TYR SEQRES 15 A 381 GLU LYS ALA SER VAL HIS GLU ASP ILE PHE THR ASP VAL SEQRES 16 A 381 TYR GLY ASN ARG GLN LYS VAL GLU PHE MET ASN SER GLU SEQRES 17 A 381 GLU ASN LEU TYR ILE GLU GLU GLU ASN ALA ILE GLY PHE SEQRES 18 A 381 VAL LYS PRO TYR ALA LYS ASN HIS TYR SER PHE VAL ALA SEQRES 19 A 381 ILE LEU PRO ASP GLU ASN ILE SER VAL ASN GLU TYR ILE SEQRES 20 A 381 LYS THR LEU THR GLY GLN LYS PHE ILE ASP LEU ILE LYS SEQRES 21 A 381 ASN ALA LYS ILE THR LEU VAL ARG ALA SER LEU PRO LYS SEQRES 22 A 381 PHE LYS TYR GLU TYR THR ILE LYS MET ASN GLU THR LEU SEQRES 23 A 381 GLU SER LEU GLY MET THR ASP ALA PHE LEU PRO ASP LYS SEQRES 24 A 381 ALA ASP PHE SER LYS LEU GLY LYS SER ASP ILE GLY ASN SEQRES 25 A 381 LEU TYR ILE SER GLU VAL LEU HIS LYS THR PHE ILE SER SEQRES 26 A 381 VAL ASP GLU LEU GLY THR LYS ALA GLY ALA VAL THR SER SEQRES 27 A 381 VAL ASP ILE THR ALA ALA GLY ILE PRO VAL ASN PHE LYS SEQRES 28 A 381 THR VAL LYS LEU ASN ARG PRO PHE ILE PHE ALA ILE ILE SEQRES 29 A 381 ASP ASN SER THR ASN LEU PRO ILE PHE ILE GLY THR VAL SEQRES 30 A 381 LEU SER LEU LYS SEQRES 1 B 381 ASP ARG ILE LYS ALA ASN PRO VAL SER GLU LYS ASN ILE SEQRES 2 B 381 ASP GLU LYS PHE ILE TYR ASN THR ALA ASP PHE SER ILE SEQRES 3 B 381 GLU LEU PHE LYS ASN SER ILE ASP ASP LYS GLU ASN SER SEQRES 4 B 381 LEU ILE SER PRO LEU SER ALA MET LEU ALA LEU ALA MET SEQRES 5 B 381 THR ALA ASN GLY ALA ASP ASN GLU THR LEU ALA GLN MET SEQRES 6 B 381 GLU LYS ALA LEU GLY LYS ASP ILE SER ILE GLU ASP LEU SEQRES 7 B 381 ASN LYS TYR LEU TYR THR TYR MET LYS LYS LEU PRO ASN SEQRES 8 B 381 GLU GLU LYS SER LYS LEU THR ILE ALA ASN SER ILE TRP SEQRES 9 B 381 PHE LYS GLU ASN ASP PHE MET PRO SER LYS ASP PHE LEU SEQRES 10 B 381 GLN ILE ILE ALA ASP TYR TYR LYS ALA ASP ILE PHE LYS SEQRES 11 B 381 ALA ALA PHE ASP SER SER THR VAL SER ASP ILE ASN ASN SEQRES 12 B 381 TRP VAL LYS SER LYS THR ASN GLY MET ILE ASP LYS ILE SEQRES 13 B 381 LEU ASN LYS ILE ASP PRO GLU ASP VAL MET TYR LEU ILE SEQRES 14 B 381 ASN ALA VAL ALA PHE ASP ALA GLU TRP GLU THR VAL TYR SEQRES 15 B 381 GLU LYS ALA SER VAL HIS GLU ASP ILE PHE THR ASP VAL SEQRES 16 B 381 TYR GLY ASN ARG GLN LYS VAL GLU PHE MET ASN SER GLU SEQRES 17 B 381 GLU ASN LEU TYR ILE GLU GLU GLU ASN ALA ILE GLY PHE SEQRES 18 B 381 VAL LYS PRO TYR ALA LYS ASN HIS TYR SER PHE VAL ALA SEQRES 19 B 381 ILE LEU PRO ASP GLU ASN ILE SER VAL ASN GLU TYR ILE SEQRES 20 B 381 LYS THR LEU THR GLY GLN LYS PHE ILE ASP LEU ILE LYS SEQRES 21 B 381 ASN ALA LYS ILE THR LEU VAL ARG ALA SER LEU PRO LYS SEQRES 22 B 381 PHE LYS TYR GLU TYR THR ILE LYS MET ASN GLU THR LEU SEQRES 23 B 381 GLU SER LEU GLY MET THR ASP ALA PHE LEU PRO ASP LYS SEQRES 24 B 381 ALA ASP PHE SER LYS LEU GLY LYS SER ASP ILE GLY ASN SEQRES 25 B 381 LEU TYR ILE SER GLU VAL LEU HIS LYS THR PHE ILE SER SEQRES 26 B 381 VAL ASP GLU LEU GLY THR LYS ALA GLY ALA VAL THR SER SEQRES 27 B 381 VAL ASP ILE THR ALA ALA GLY ILE PRO VAL ASN PHE LYS SEQRES 28 B 381 THR VAL LYS LEU ASN ARG PRO PHE ILE PHE ALA ILE ILE SEQRES 29 B 381 ASP ASN SER THR ASN LEU PRO ILE PHE ILE GLY THR VAL SEQRES 30 B 381 LEU SER LEU LYS FORMUL 3 HOH *240(H2 O) HELIX 1 1 ASP A 56 ILE A 75 1 20 HELIX 2 2 SER A 84 ASN A 97 1 14 HELIX 3 3 ASP A 100 LYS A 113 1 14 HELIX 4 4 SER A 116 LEU A 131 1 16 HELIX 5 5 SER A 155 LYS A 167 1 13 HELIX 6 6 ASP A 176 THR A 191 1 16 HELIX 7 7 GLU A 225 ALA A 227 5 3 HELIX 8 8 ALA A 268 ASN A 270 5 3 HELIX 9 9 SER A 284 LEU A 292 1 9 HELIX 10 10 THR A 293 ASN A 303 1 11 HELIX 11 11 MET A 324 SER A 330 1 7 HELIX 12 12 THR A 334 LEU A 338 5 5 HELIX 13 13 ASP B 56 ASN B 73 1 18 HELIX 14 14 SER B 84 ASN B 97 1 14 HELIX 15 15 ASP B 100 LYS B 113 1 14 HELIX 16 16 SER B 116 LEU B 131 1 16 HELIX 17 17 SER B 155 LYS B 167 1 13 HELIX 18 18 ASP B 176 THR B 191 1 16 HELIX 19 19 GLU B 225 ALA B 227 5 3 HELIX 20 20 ALA B 268 ASN B 270 5 3 HELIX 21 21 GLU B 287 LEU B 292 1 6 HELIX 22 22 THR B 293 ASN B 303 1 11 HELIX 23 23 MET B 324 SER B 330 1 7 HELIX 24 24 THR B 334 LEU B 338 5 5 SHEET 1 AA 7 SER A 81 ILE A 83 0 SHEET 2 AA 7 PRO A 413 VAL A 419 -1 O ILE A 416 N ILE A 83 SHEET 3 AA 7 PHE A 401 ASP A 407 -1 O PHE A 401 N VAL A 419 SHEET 4 AA 7 TYR A 272 PRO A 279 -1 O SER A 273 N ILE A 406 SHEET 5 AA 7 ALA A 260 PRO A 266 -1 O ILE A 261 N LEU A 278 SHEET 6 AA 7 ARG A 241 GLU A 256 -1 O LEU A 253 N VAL A 264 SHEET 7 AA 7 VAL A 229 THR A 235 -1 O HIS A 230 N PHE A 246 SHEET 1 AB 7 SER A 81 ILE A 83 0 SHEET 2 AB 7 PRO A 413 VAL A 419 -1 O ILE A 416 N ILE A 83 SHEET 3 AB 7 PHE A 401 ASP A 407 -1 O PHE A 401 N VAL A 419 SHEET 4 AB 7 TYR A 272 PRO A 279 -1 O SER A 273 N ILE A 406 SHEET 5 AB 7 ALA A 260 PRO A 266 -1 O ILE A 261 N LEU A 278 SHEET 6 AB 7 ARG A 241 GLU A 256 -1 O LEU A 253 N VAL A 264 SHEET 7 AB 7 LYS A 305 PRO A 314 -1 O LYS A 305 N TYR A 254 SHEET 1 AC 6 ASP A 169 ALA A 173 0 SHEET 2 AC 6 SER A 137 LYS A 148 1 O ASN A 143 N ASP A 169 SHEET 3 AC 6 ASP A 206 GLU A 219 -1 O VAL A 207 N LYS A 148 SHEET 4 AC 6 GLY A 372 THR A 384 -1 O THR A 373 N ALA A 218 SHEET 5 AC 6 TYR A 356 VAL A 368 -1 O TYR A 356 N THR A 384 SHEET 6 AC 6 PHE A 316 LYS A 323 -1 O PHE A 316 N VAL A 368 SHEET 1 AD 2 PHE A 152 PRO A 154 0 SHEET 2 AD 2 GLY A 348 SER A 350 -1 O LYS A 349 N MET A 153 SHEET 1 BA 7 LEU B 82 ILE B 83 0 SHEET 2 BA 7 PRO B 413 VAL B 419 -1 O ILE B 416 N ILE B 83 SHEET 3 BA 7 PHE B 401 ASP B 407 -1 O PHE B 401 N VAL B 419 SHEET 4 BA 7 TYR B 272 ILE B 277 -1 O SER B 273 N ILE B 406 SHEET 5 BA 7 ALA B 260 PRO B 266 -1 O PHE B 263 N ALA B 276 SHEET 6 BA 7 ARG B 241 GLU B 257 -1 O LEU B 253 N VAL B 264 SHEET 7 BA 7 VAL B 229 THR B 235 -1 O HIS B 230 N PHE B 246 SHEET 1 BB 7 LEU B 82 ILE B 83 0 SHEET 2 BB 7 PRO B 413 VAL B 419 -1 O ILE B 416 N ILE B 83 SHEET 3 BB 7 PHE B 401 ASP B 407 -1 O PHE B 401 N VAL B 419 SHEET 4 BB 7 TYR B 272 ILE B 277 -1 O SER B 273 N ILE B 406 SHEET 5 BB 7 ALA B 260 PRO B 266 -1 O PHE B 263 N ALA B 276 SHEET 6 BB 7 ARG B 241 GLU B 257 -1 O LEU B 253 N VAL B 264 SHEET 7 BB 7 LYS B 305 PRO B 314 -1 N LYS B 305 O TYR B 254 SHEET 1 BC 6 ASP B 169 ALA B 173 0 SHEET 2 BC 6 SER B 137 LYS B 148 1 O ASN B 143 N ASP B 169 SHEET 3 BC 6 ASP B 206 GLU B 219 -1 O VAL B 207 N LYS B 148 SHEET 4 BC 6 GLY B 372 THR B 384 -1 O THR B 373 N ALA B 218 SHEET 5 BC 6 TYR B 356 VAL B 368 -1 O TYR B 356 N THR B 384 SHEET 6 BC 6 LYS B 317 LYS B 323 -1 O TYR B 318 N ILE B 366 SHEET 1 BD 2 PHE B 152 PRO B 154 0 SHEET 2 BD 2 GLY B 348 SER B 350 -1 O LYS B 349 N MET B 153 CRYST1 42.895 68.669 137.651 90.00 93.45 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023313 0.000000 0.001405 0.00000 SCALE2 0.000000 0.014563 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007278 0.00000