HEADER COMPLEX (HEMAGGLUTININ/IMMUNOGLOBULIN) 22-DEC-97 2VIT TITLE INFLUENZA VIRUS HEMAGGLUTININ, MUTANT WITH THR 155 REPLACED BY ILE, TITLE 2 COMPLEXED WITH A NEUTRALIZING ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN (IGG1, LAMBDA); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FAB FRAGMENT; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IMMUNOGLOBULIN (IGG1, LAMBDA); COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: FAB FRAGMENT; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HEMAGGLUTININ; COMPND 11 CHAIN: C; COMPND 12 FRAGMENT: PROTEOLYTIC FRAGMENT "HA TOP" CONTAINING HA1 RESIDUES 28 - COMPND 13 328; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB/C; SOURCE 6 CELL: HYBRIDOMA; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 STRAIN: BALB-C; SOURCE 12 CELL: HYBRIDOMA; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/X-31(H3N2)); SOURCE 15 ORGANISM_TAXID: 132504; SOURCE 16 STRAIN: X31; SOURCE 17 OTHER_DETAILS: A REASSORTANT INFLUENZA STRAIN CONTAINING A/AICHI/68 SOURCE 18 (H3N2) HEMAGGLUTININ KEYWDS COMPLEX (HEMAGGLUTININ-IMMUNOGLOBULIN), GLYCOPROTEIN, COMPLEX KEYWDS 2 (HEMAGGLUTININ-IMMUNOGLOBULIN) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.BIZEBARD,D.FLEURY,B.GIGANT,S.A.WHARTON,J.J.SKEHEL,M.KNOSSOW REVDAT 4 20-NOV-24 2VIT 1 REMARK REVDAT 3 03-NOV-21 2VIT 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2VIT 1 VERSN REVDAT 1 29-APR-98 2VIT 0 JRNL AUTH D.FLEURY,S.A.WHARTON,J.J.SKEHEL,M.KNOSSOW,T.BIZEBARD JRNL TITL ANTIGEN DISTORTION ALLOWS INFLUENZA VIRUS TO ESCAPE JRNL TITL 2 NEUTRALIZATION. JRNL REF NAT.STRUCT.BIOL. V. 5 119 1998 JRNL REFN ISSN 1072-8368 JRNL PMID 9461077 JRNL DOI 10.1038/NSB0298-119 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.BIZEBARD,B.GIGANT,P.RIGOLET,B.RASMUSSEN,O.DIAT,P.BOSECKE, REMARK 1 AUTH 2 S.A.WHARTON,J.J.SKEHEL,M.KNOSSOW REMARK 1 TITL STRUCTURE OF INFLUENZA VIRUS HAEMAGGLUTININ COMPLEXED WITH A REMARK 1 TITL 2 NEUTRALIZING ANTIBODY REMARK 1 REF NATURE V. 376 92 1995 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.BIZEBARD,R.DANIELS,R.KAHN,B.GOLINELLI-PIMPANEAU, REMARK 1 AUTH 2 J.J.SKEHEL,M.KNOSSOW REMARK 1 TITL REFINED THREE-DIMENSIONAL STRUCTURE OF THE FAB FRAGMENT OF A REMARK 1 TITL 2 MURINE IGGL,<LAMBDA> ANTIBODY REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 50 768 1994 REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 3 REMARK 1 AUTH I.A.WILSON,J.J.SKEHEL,D.C.WILEY REMARK 1 TITL STRUCTURE OF THE HAEMAGGLUTININ MEMBRANE GLYCOPROTEIN OF REMARK 1 TITL 2 INFLUENZA VIRUS AT 3 A RESOLUTION REMARK 1 REF NATURE V. 289 366 1981 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 3.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.84 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 16359 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5337 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.600 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2VIT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.85 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18297 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.250 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.84 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 171.66667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 343.33333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 257.50000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 429.16667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.83333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 171.66667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 343.33333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 429.16667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 257.50000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 85.83333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE TWO MOLECULES (HEMAGGLUTININ "TOP" AND FAB FRAGMENT) REMARK 400 ARE OBTAINED BY PROTEOLYSIS OF BIGGER PROTEINS. FOR THIS REMARK 400 REASON, THE C-TERMINI OF EACH OF THE THREE POLYPEPTIDE REMARK 400 CHAINS ARE NOT UNIQUE (AS THE PROTEOLYSIS ARE NOT. REMARK 400 ABSOLUTELY SPECIFIC). THE NUMBERING OF THE HEMAGGLUTININ REMARK 400 FRAGMENT IS MADE ACCORDING TO THE ORIGINAL NUMBERING OF REMARK 400 THE INTACT HEMAGGLUTININ MOLECULE: IT STARTS AT RESIDUE 28, REMARK 400 BUT RESIDUES 28 - 42 ARE NOT VISIBLE IN THE ELECTRON REMARK 400 DENSITY MAPS. THEREFORE, THE LISTED COORDINATES START AT REMARK 400 RESIDUE 43. REMARK 400 REMARK 400 THE HEMAGGLUTININ "TOP" FRAGMENT WAS DEGLYCOSYLATED WITH REMARK 400 N-GLYCOSIDASE F TO REMOVE 4 N-LINKED SUGARS. IN THE REMARK 400 PROCESS, THE CORRESPONDING ASN RESIDUES (C 38, C 81, C 165, REMARK 400 AND C 285) HAVE BEEN CONVERTED TO ASP. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR C 28 REMARK 465 ILE C 29 REMARK 465 THR C 30 REMARK 465 ASP C 31 REMARK 465 ASP C 32 REMARK 465 GLN C 33 REMARK 465 ILE C 34 REMARK 465 GLU C 35 REMARK 465 VAL C 36 REMARK 465 THR C 37 REMARK 465 ASN C 38 REMARK 465 ALA C 39 REMARK 465 THR C 40 REMARK 465 GLU C 41 REMARK 465 LEU C 42 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 58 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 PRO B 9 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 PRO B 135 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 2 -179.89 60.66 REMARK 500 GLU A 7 135.74 -38.64 REMARK 500 ALA A 35 123.69 -34.73 REMARK 500 HIS A 44 82.45 34.19 REMARK 500 LEU A 49 -54.15 -120.57 REMARK 500 THR A 53 -38.91 86.75 REMARK 500 PRO A 58 -77.42 -20.86 REMARK 500 ARG A 63 -7.81 -59.69 REMARK 500 GLU A 83 26.35 -77.48 REMARK 500 ALA A 86 173.30 174.67 REMARK 500 SER A 95 72.15 49.61 REMARK 500 LEU A 109 103.63 -31.63 REMARK 500 THR A 159 19.73 -141.75 REMARK 500 LYS A 174 -155.81 -80.33 REMARK 500 ARG A 190 -8.58 -58.26 REMARK 500 GLN B 3 127.52 -170.92 REMARK 500 SER B 15 78.45 68.70 REMARK 500 GLN B 16 -162.00 -167.30 REMARK 500 ALA B 62 -72.39 -58.71 REMARK 500 SER B 68 102.66 -175.14 REMARK 500 THR B 87 -48.66 -20.54 REMARK 500 PHE B 105 61.30 61.20 REMARK 500 CYS B 149 101.65 -165.14 REMARK 500 PHE B 155 136.89 -174.41 REMARK 500 SER B 169 -39.29 -133.96 REMARK 500 SER B 170 109.38 -56.37 REMARK 500 HIS B 173 99.87 7.95 REMARK 500 SER B 181 -107.56 61.85 REMARK 500 ASP B 182 14.91 -142.51 REMARK 500 SER B 195 51.62 -93.90 REMARK 500 THR B 196 -27.74 -162.29 REMARK 500 SER B 212 23.54 33.44 REMARK 500 ILE C 62 -117.14 52.89 REMARK 500 ASP C 81 10.23 58.46 REMARK 500 ALA C 93 116.75 -16.70 REMARK 500 ASN C 96 56.64 -174.45 REMARK 500 ASP C 104 36.58 78.07 REMARK 500 ASN C 133 25.68 48.22 REMARK 500 CYS C 139 52.18 -146.81 REMARK 500 SER C 145 130.18 -36.72 REMARK 500 ASP C 165 65.47 -165.38 REMARK 500 VAL C 196 -72.26 64.39 REMARK 500 SER C 199 118.52 -166.75 REMARK 500 SER C 209 -168.22 -109.75 REMARK 500 GLN C 210 87.75 174.14 REMARK 500 ASN C 248 29.66 -152.46 REMARK 500 ASN C 250 -3.14 65.13 REMARK 500 ARG C 261 -158.65 -98.98 REMARK 500 SER C 270 147.90 -170.79 REMARK 500 ALA C 304 90.28 -50.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 143 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 211 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 16 OE1 REMARK 620 2 GLU A 16 OE2 65.7 REMARK 620 3 ASP A 154 OD2 93.0 104.9 REMARK 620 4 HIS A 191 ND1 160.0 94.9 97.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 212 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 141 OD2 REMARK 620 2 HIS B 173 NE2 90.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 203 NE2 REMARK 620 2 HIS C 56 NE2 112.9 REMARK 620 3 GLU C 280 OE2 101.7 89.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 212 DBREF 2VIT A 1 210 GB 387376 AAA39089 20 229 DBREF 2VIT B 1 221 GB 4096752 AAD00000 1 212 DBREF 2VIT C 28 309 UNP P03437 HEMA_IAAIC 44 325 SEQADV 2VIT GLN B 3 GB 4096752 LYS 3 CONFLICT SEQADV 2VIT LYS B 5 GB 4096752 GLN 5 CONFLICT SEQADV 2VIT LEU B 28 GB 4096752 SER 28 CONFLICT SEQADV 2VIT ILE B 30 GB 4096752 THR 30 CONFLICT SEQADV 2VIT ASN B 32 GB 4096752 TYR 32 CONFLICT SEQADV 2VIT LEU B 63 GB 4096752 HIS 63 CONFLICT SEQADV 2VIT ILE B 69 GB 4096752 PHE 69 CONFLICT SEQADV 2VIT LYS B 83 GB 4096752 ASN 83 CONFLICT SEQADV 2VIT MET B 92 GB 4096752 LEU 92 CONFLICT SEQADV 2VIT ASP B 98 GB 4096752 INSERTION SEQADV 2VIT PHE B 99 GB 4096752 INSERTION SEQADV 2VIT TYR B 100 GB 4096752 INSERTION SEQADV 2VIT TYR B 102 GB 4096752 HIS 99 CONFLICT SEQADV 2VIT ASP B 103 GB 4096752 GLY 100 CONFLICT SEQADV 2VIT PHE B 105 GB 4096752 INSERTION SEQADV 2VIT TYR B 106 GB 4096752 INSERTION SEQADV 2VIT TYR B 107 GB 4096752 INSERTION SEQADV 2VIT ALA B 108 GB 4096752 INSERTION SEQADV 2VIT MET B 109 GB 4096752 INSERTION SEQADV 2VIT ASP B 110 GB 4096752 INSERTION SEQADV 2VIT SER B 117 GB 4096752 LEU 108 CONFLICT SEQADV 2VIT SER B 122 GB 4096752 ALA 113 CONFLICT SEQADV 2VIT PRO B 135 GB 4096752 SER 126 CONFLICT SEQADV 2VIT ASP C 81 UNP P03437 ASN 97 MODIFIED RESIDUE SEQADV 2VIT ILE C 155 UNP P03437 THR 171 ENGINEERED MUTATION SEQADV 2VIT ASP C 165 UNP P03437 ASN 181 MODIFIED RESIDUE SEQADV 2VIT ASP C 285 UNP P03437 ASN 301 MODIFIED RESIDUE SEQRES 1 A 210 GLN ALA VAL VAL THR GLN GLU SER ALA LEU THR THR SER SEQRES 2 A 210 PRO GLY GLU THR VAL THR LEU THR CYS ARG SER SER THR SEQRES 3 A 210 GLY ALA VAL THR THR SER ASN TYR ALA ASN TRP VAL GLN SEQRES 4 A 210 GLU LYS PRO ASP HIS LEU PHE THR GLY LEU ILE GLY GLY SEQRES 5 A 210 THR ASN ASN ARG ALA PRO GLY VAL PRO ALA ARG PHE SER SEQRES 6 A 210 GLY SER LEU ILE GLY ASP LYS ALA ALA LEU THR ILE THR SEQRES 7 A 210 GLY ALA GLN THR GLU ASP GLU ALA ILE TYR PHE CYS ALA SEQRES 8 A 210 LEU TRP TYR SER ASN HIS TRP VAL PHE GLY GLY GLY THR SEQRES 9 A 210 LYS LEU THR VAL LEU GLY GLN PRO LYS SER SER PRO SER SEQRES 10 A 210 VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLU THR SEQRES 11 A 210 ASN LYS ALA THR LEU VAL CYS THR ILE THR ASP PHE TYR SEQRES 12 A 210 PRO GLY VAL VAL THR VAL ASP TRP LYS VAL ASP GLY THR SEQRES 13 A 210 PRO VAL THR GLN GLY MET GLU THR THR GLN PRO SER LYS SEQRES 14 A 210 GLN SER ASN ASN LYS TYR MET ALA SER SER TYR LEU THR SEQRES 15 A 210 LEU THR ALA ARG ALA TRP GLU ARG HIS SER SER TYR SER SEQRES 16 A 210 CYS GLN VAL THR HIS GLU GLY HIS THR VAL GLU LYS SER SEQRES 17 A 210 LEU SER SEQRES 1 B 221 GLN VAL GLN LEU LYS GLU SER GLY PRO GLY LEU VAL ALA SEQRES 2 B 221 PRO SER GLN SER LEU SER ILE THR CYS THR VAL SER GLY SEQRES 3 B 221 PHE LEU LEU ILE SER ASN GLY VAL HIS TRP VAL ARG GLN SEQRES 4 B 221 PRO PRO GLY LYS GLY LEU GLU TRP LEU GLY VAL ILE TRP SEQRES 5 B 221 ALA GLY GLY ASN THR ASN TYR ASN SER ALA LEU MET SER SEQRES 6 B 221 ARG VAL SER ILE SER LYS ASP ASN SER LYS SER GLN VAL SEQRES 7 B 221 PHE LEU LYS MET LYS SER LEU GLN THR ASP ASP THR ALA SEQRES 8 B 221 MET TYR TYR CYS ALA ARG ASP PHE TYR ASP TYR ASP VAL SEQRES 9 B 221 PHE TYR TYR ALA MET ASP TYR TRP GLY GLN GLY THR SER SEQRES 10 B 221 VAL THR VAL SER SER ALA LYS THR THR PRO PRO SER VAL SEQRES 11 B 221 TYR PRO LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER SEQRES 12 B 221 MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO SEQRES 13 B 221 GLU PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SER SEQRES 14 B 221 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP SEQRES 15 B 221 LEU TYR THR LEU SER SER SER VAL THR VAL PRO SER SER SEQRES 16 B 221 THR TRP PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS SEQRES 17 B 221 PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO SEQRES 1 C 282 THR ILE THR ASP ASP GLN ILE GLU VAL THR ASN ALA THR SEQRES 2 C 282 GLU LEU VAL GLN SER SER SER THR GLY LYS ILE CYS ASN SEQRES 3 C 282 ASN PRO HIS ARG ILE LEU ASP GLY ILE ASP CYS THR LEU SEQRES 4 C 282 ILE ASP ALA LEU LEU GLY ASP PRO HIS CYS ASP VAL PHE SEQRES 5 C 282 GLN ASP GLU THR TRP ASP LEU PHE VAL GLU ARG SER LYS SEQRES 6 C 282 ALA PHE SER ASN CYS TYR PRO TYR ASP VAL PRO ASP TYR SEQRES 7 C 282 ALA SER LEU ARG SER LEU VAL ALA SER SER GLY THR LEU SEQRES 8 C 282 GLU PHE ILE THR GLU GLY PHE THR TRP THR GLY VAL THR SEQRES 9 C 282 GLN ASN GLY GLY SER ASN ALA CYS LYS ARG GLY PRO GLY SEQRES 10 C 282 SER GLY PHE PHE SER ARG LEU ASN TRP LEU ILE LYS SER SEQRES 11 C 282 GLY SER THR TYR PRO VAL LEU ASP VAL THR MET PRO ASN SEQRES 12 C 282 ASN ASP ASN PHE ASP LYS LEU TYR ILE TRP GLY ILE HIS SEQRES 13 C 282 HIS PRO SER THR ASN GLN GLU GLN THR SER LEU TYR VAL SEQRES 14 C 282 GLN ALA SER GLY ARG VAL THR VAL SER THR ARG ARG SER SEQRES 15 C 282 GLN GLN THR ILE ILE PRO ASN ILE GLY SER ARG PRO TRP SEQRES 16 C 282 VAL ARG GLY LEU SER SER ARG ILE SER ILE TYR TRP THR SEQRES 17 C 282 ILE VAL LYS PRO GLY ASP VAL LEU VAL ILE ASN SER ASN SEQRES 18 C 282 GLY ASN LEU ILE ALA PRO ARG GLY TYR PHE LYS MET ARG SEQRES 19 C 282 THR GLY LYS SER SER ILE MET ARG SER ASP ALA PRO ILE SEQRES 20 C 282 ASP THR CYS ILE SER GLU CYS ILE THR PRO ASP GLY SER SEQRES 21 C 282 ILE PRO ASN ASP LYS PRO PHE GLN ASN VAL ASN LYS ILE SEQRES 22 C 282 THR TYR GLY ALA CYS PRO LYS TYR VAL HET ZN A 211 1 HET ZN A 212 1 HET ZN C 1 1 HETNAM ZN ZINC ION FORMUL 4 ZN 3(ZN 2+) HELIX 1 1 THR A 31 ASN A 33 5 3 HELIX 2 2 THR A 82 ASP A 84 5 3 HELIX 3 3 SER A 125 THR A 130 1 6 HELIX 4 4 ALA A 185 GLU A 189 1 5 HELIX 5 5 LEU B 63 SER B 65 5 3 HELIX 6 6 THR B 87 ASP B 89 5 3 HELIX 7 7 ASN B 164 GLY B 166 5 3 HELIX 8 8 PRO B 209 SER B 211 5 3 HELIX 9 9 LEU C 66 LEU C 71 1 6 HELIX 10 10 PRO C 74 PHE C 79 5 6 HELIX 11 11 TYR C 105 SER C 115 1 11 HELIX 12 12 ASN C 137 CYS C 139 5 3 HELIX 13 13 ASN C 188 TYR C 195 1 8 SHEET 1 A 5 ALA A 9 SER A 13 0 SHEET 2 A 5 THR A 104 LEU A 109 1 N LYS A 105 O LEU A 10 SHEET 3 A 5 ALA A 86 ALA A 91 -1 N TYR A 88 O THR A 104 SHEET 4 A 5 ASN A 36 LYS A 41 -1 N GLU A 40 O ILE A 87 SHEET 5 A 5 LEU A 45 ILE A 50 -1 N ILE A 50 O TRP A 37 SHEET 1 B 3 THR A 17 CYS A 22 0 SHEET 2 B 3 LYS A 72 THR A 78 -1 N ILE A 77 O VAL A 18 SHEET 3 B 3 PHE A 64 ILE A 69 -1 N ILE A 69 O LYS A 72 SHEET 1 C 2 ALA A 91 TRP A 93 0 SHEET 2 C 2 TRP A 98 PHE A 100 -1 N VAL A 99 O LEU A 92 SHEET 1 D 3 THR A 148 VAL A 153 0 SHEET 2 D 3 TYR A 194 HIS A 200 -1 N THR A 199 O THR A 148 SHEET 3 D 3 HIS A 203 LEU A 209 -1 N LEU A 209 O TYR A 194 SHEET 1 E 3 MET A 162 THR A 164 0 SHEET 2 E 3 TYR A 175 LEU A 183 -1 N TYR A 180 O GLU A 163 SHEET 3 E 3 ALA A 133 PHE A 142 -1 N PHE A 142 O TYR A 175 SHEET 1 F 4 GLN B 3 SER B 7 0 SHEET 2 F 4 SER B 17 SER B 25 -1 N SER B 25 O GLN B 3 SHEET 3 F 4 GLN B 77 LYS B 83 -1 N MET B 82 O LEU B 18 SHEET 4 F 4 ILE B 69 ASP B 72 -1 N ASP B 72 O GLN B 77 SHEET 1 G 5 THR B 116 VAL B 118 0 SHEET 2 G 5 ALA B 91 ASP B 98 -1 N TYR B 93 O THR B 116 SHEET 3 G 5 GLY B 33 GLN B 39 -1 N GLN B 39 O MET B 92 SHEET 4 G 5 LEU B 45 ILE B 51 -1 N ILE B 51 O VAL B 34 SHEET 5 G 5 THR B 57 TYR B 59 -1 N ASN B 58 O VAL B 50 SHEET 1 H 2 ASP B 98 TYR B 100 0 SHEET 2 H 2 TYR B 107 MET B 109 -1 N ALA B 108 O PHE B 99 SHEET 1 I 2 SER B 129 LEU B 133 0 SHEET 2 I 2 GLY B 148 LYS B 152 -1 N LYS B 152 O SER B 129 SHEET 1 J 2 MET B 144 LEU B 147 0 SHEET 2 J 2 VAL B 190 PRO B 193 -1 N VAL B 192 O VAL B 145 SHEET 1 K 3 THR B 160 TRP B 163 0 SHEET 2 K 3 THR B 203 HIS B 208 -1 N ALA B 207 O THR B 160 SHEET 3 K 3 THR B 213 LYS B 218 -1 N LYS B 217 O CYS B 204 SHEET 1 L 2 VAL B 178 GLN B 180 0 SHEET 2 L 2 LEU B 183 THR B 185 -1 N THR B 185 O VAL B 178 SHEET 1 M 2 LYS C 50 CYS C 52 0 SHEET 2 M 2 PRO C 273 ASP C 275 1 N PRO C 273 O ILE C 51 SHEET 1 N 3 ILE C 58 ASP C 60 0 SHEET 2 N 3 LEU C 86 GLU C 89 1 N LEU C 86 O LEU C 59 SHEET 3 N 3 SER C 266 ARG C 269 1 N SER C 266 O PHE C 87 SHEET 1 O 2 PHE C 120 THR C 122 0 SHEET 2 O 2 GLY C 256 PHE C 258 -1 N TYR C 257 O ILE C 121 SHEET 1 P 2 LEU C 151 TRP C 153 0 SHEET 2 P 2 ILE C 252 PRO C 254 -1 N ALA C 253 O ASN C 152 SHEET 1 Q 4 LEU C 164 ASN C 170 0 SHEET 2 Q 4 ASP C 241 GLY C 249 -1 N SER C 247 O LEU C 164 SHEET 3 Q 4 ARG C 201 SER C 205 -1 N SER C 205 O VAL C 244 SHEET 4 Q 4 GLN C 211 ILE C 213 -1 N ILE C 213 O VAL C 202 SHEET 1 R 2 LYS C 176 HIS C 184 0 SHEET 2 R 2 ARG C 229 VAL C 237 -1 N VAL C 237 O LYS C 176 SSBOND 1 CYS A 22 CYS A 90 1555 1555 2.02 SSBOND 2 CYS A 137 CYS A 196 1555 1555 2.03 SSBOND 3 CYS B 22 CYS B 95 1555 1555 2.03 SSBOND 4 CYS B 149 CYS B 204 1555 1555 2.03 SSBOND 5 CYS C 52 CYS C 277 1555 1555 2.03 SSBOND 6 CYS C 64 CYS C 76 1555 1555 2.05 SSBOND 7 CYS C 97 CYS C 139 1555 1555 2.04 SSBOND 8 CYS C 281 CYS C 305 1555 1555 2.02 LINK OE1 GLU A 16 ZN ZN A 211 9654 1555 1.94 LINK OE2 GLU A 16 ZN ZN A 211 9654 1555 2.07 LINK OD2 ASP A 141 ZN ZN A 212 1555 1555 2.44 LINK OD2 ASP A 154 ZN ZN A 211 1555 1555 1.77 LINK ND1 HIS A 191 ZN ZN A 211 1555 1555 2.01 LINK NE2 HIS A 203 ZN ZN C 1 5564 1555 1.52 LINK ZN ZN A 212 NE2 HIS B 173 1555 1555 2.26 LINK ZN ZN C 1 NE2 HIS C 56 1555 1555 1.79 LINK ZN ZN C 1 OE2 GLU C 280 1555 1555 2.03 CISPEP 1 TYR A 143 PRO A 144 0 -0.60 CISPEP 2 PHE B 155 PRO B 156 0 0.02 CISPEP 3 GLU B 157 PRO B 158 0 -2.31 CISPEP 4 TRP B 197 PRO B 198 0 -0.08 CISPEP 5 ASN C 54 PRO C 55 0 0.88 SITE 1 AC1 4 HIS A 203 THR A 204 HIS C 56 GLU C 280 SITE 1 AC2 3 GLU A 16 ASP A 154 HIS A 191 SITE 1 AC3 2 ASP A 141 HIS B 173 CRYST1 85.500 85.500 515.000 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011696 0.006753 0.000000 0.00000 SCALE2 0.000000 0.013505 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001942 0.00000