HEADER PROTEIN TRANSPORT 06-DEC-07 2VJ0 TITLE CRYSTAL STRUCTURE OF THE ALPHA-ADAPTIN APPENDAGE DOMAIN, FROM THE AP2 TITLE 2 ADAPTOR COMPLEX, IN COMPLEX WITH AN FXDNF PEPTIDE FROM AMPHIPHYSIN1 TITLE 3 AND A WVXF PEPTIDE FROM SYNAPTOJANIN P170 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AP-2 COMPLEX SUBUNIT ALPHA-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: APPENDAGE DOMAIN, RESIDUES 693-938; COMPND 5 SYNONYM: ADAPTER-RELATED PROTEIN COMPLEX 2 ALPHA-2 SUBUNIT, ALPHA- COMPND 6 ADAPTIN C, ADAPTOR PROTEIN COMPLEX AP-2 ALPHA-2 SUBUNIT, CLATHRIN COMPND 7 ASSEMBLY PROTEIN COMPLEX 2 ALPHA-C LARGE CHAIN, 100 KDA COATED COMPND 8 VESICLE PROTEIN C, PLASMA MEMBRANE ADAPTOR HA2/AP2 ADAPTIN ALPHA C COMPND 9 SUBUNIT; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: SYNAPTOJANIN-1; COMPND 13 CHAIN: P; COMPND 14 FRAGMENT: PEPTIDE CONTAINING WVXF MOTIF, RESIDUES 1479-1490; COMPND 15 SYNONYM: SYNAPTIC INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE 1, COMPND 16 SYNAPTOJANIN-1 P170; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 3; COMPND 19 MOLECULE: AMPHIPHYSIN; COMPND 20 CHAIN: Q; COMPND 21 FRAGMENT: PEPTIDE CONTAINING FXDNF MOTIF, RESIDUES 324-330; COMPND 22 SYNONYM: AMPHIPHYSIN1; COMPND 23 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 ORGAN: BRAIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-4T2; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 MOL_ID: 3; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 19 ORGANISM_COMMON: RAT; SOURCE 20 ORGANISM_TAXID: 10116 KEYWDS PROTEIN TRANSPORT, CYTOPLASMIC VESICLE, ALTERNATIVE SPLICING, KEYWDS 2 TRANSPORT, COATED PIT, SH3 DOMAIN, ENDOCYTOSIS, ALPHA-ADAPTIN, GOLGI KEYWDS 3 APPARATUS, PHOSPHORYLATION, AP2, SYNAPSE, MEMBRANE, CYTOPLASM, KEYWDS 4 COILED COIL, AMPHIPHYSIN, CYTOSKELETON, SYNAPTOJANIN, LIPID-BINDING, KEYWDS 5 CELL JUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.G.J.FORD,G.J.K.PRAEFCKE,H.T.MCMAHON REVDAT 4 13-DEC-23 2VJ0 1 REMARK REVDAT 3 24-FEB-09 2VJ0 1 VERSN REVDAT 2 26-FEB-08 2VJ0 1 JRNL REVDAT 1 25-DEC-07 2VJ0 0 JRNL AUTH L.E.OLESEN,M.G.J.FORD,E.M.SCHMID,Y.VALLIS,M.MADAN BABU, JRNL AUTH 2 P.H.LI,I.G.MILLS,H.T.MCMAHON,G.J.K.PRAEFCKE JRNL TITL SOLITARY AND REPETITIVE BINDING MOTIFS FOR THE AP2 COMPLEX JRNL TITL 2 {ALPHA}-APPENDAGE IN AMPHIPHYSIN AND OTHER ACCESSORY JRNL TITL 3 PROTEINS. JRNL REF J.BIOL.CHEM. V. 283 5099 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 17986441 JRNL DOI 10.1074/JBC.M708621200 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0037 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 47892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 2427 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 6.66 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 17.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 585 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.1580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2068 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 343 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20500 REMARK 3 B22 (A**2) : -0.34000 REMARK 3 B33 (A**2) : 0.16400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.16400 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.420 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2164 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2941 ; 1.299 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 268 ; 6.099 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;36.269 ;25.524 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 365 ;11.206 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;16.453 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 331 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2393 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 382 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1074 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 260 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.180 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 33 ; 0.126 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1402 ; 1.001 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2146 ; 1.426 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 896 ; 2.197 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 790 ; 3.362 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VJ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1290034664. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : BENT MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47896 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 17.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1B9K REMARK 200 REMARK 200 REMARK: THE ORIGINAL STRUCTURE BOUND ONLY TO THE SYNAPTOJANIN-1 REMARK 200 P170 PEPTIDE, NOT REPORTED IN THE PAPER, WAS SOLVED BY MOLECULAR REMARK 200 REPLACEMENT. A DIFFERENCE FOURIER WAS CALCULATED FOR THE SOAK OF REMARK 200 THE AMPHIPHYSIN PEPTIDE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M AMMONIUM SULPHATE, 3% ISOPROPANOL REMARK 280 AND 0.05M SODIUM CITRATE PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.25400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.49000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.25400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.49000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 689 REMARK 465 SER A 690 REMARK 465 PRO A 691 REMARK 465 GLY A 692 REMARK 465 ASN P 1 REMARK 465 GLU P 10 REMARK 465 GLU P 11 REMARK 465 GLU P 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 847 CD OE1 NE2 REMARK 470 LYS P 3 CB CG CD CE NZ REMARK 470 GLU Q 2 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2073 O HOH A 2074 2.08 REMARK 500 O HOH A 2114 O HOH A 2144 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 732 -125.19 49.96 REMARK 500 LEU A 843 56.16 -116.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEN A1939 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTD A1940 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1941 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1942 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1943 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1944 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QTP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE AP-2 CLATHRIN ADAPTOR ALPHA- APPENDAGE REMARK 900 RELATED ID: 1KY6 RELATED DB: PDB REMARK 900 AP-2 CLATHRIN ADAPTOR ALPHA-APPENDAGE IN COMPLEX WITH EPSINDPW REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1B9K RELATED DB: PDB REMARK 900 ALPHA-ADAPTIN APPENDAGE DOMAIN, FROM CLATHRIN ADAPTOR AP2 REMARK 900 RELATED ID: 1KYU RELATED DB: PDB REMARK 900 AP-2 CLATHRIN ADAPTOR ALPHA-APPENDAGE IN COMPLEX WITH EPS15DPF REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1KYF RELATED DB: PDB REMARK 900 AP-2 CLATHRIN ADAPTOR ALPHA-APPENDAGE IN COMPLEX WITH EPS15DPF REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1GW5 RELATED DB: PDB REMARK 900 AP2 CLATHRIN ADAPTOR CORE REMARK 900 RELATED ID: 1QTS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE AP-2 CLATHRIN ADAPTOR ALPHA- APPENDAGE REMARK 900 RELATED ID: 1KY7 RELATED DB: PDB REMARK 900 THE AP-2 CLATHRIN ADAPTOR ALPHA-APPENDAGE IN COMPLEX REMARK 900 WITHAMPHIPHYSIN FXDXF REMARK 900 RELATED ID: 1W80 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ALPHA-ADAPTIN APPENDAGE DOMAIN, FROM THE REMARK 900 AP2 ADAPTOR COMPLEX, BOUND TO 2 PEPTIDES FROM SYNAPTOJANIN170 REMARK 900 RELATED ID: 2DNR RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN SYNAPTOJANIN 1 DBREF 2VJ0 A 689 692 PDB 2VJ0 2VJ0 689 692 DBREF 2VJ0 A 693 938 UNP P17427 AP2A2_MOUSE 693 938 DBREF 2VJ0 P 1 12 UNP O43426 SYNJ1_HUMAN 1479 1490 DBREF 2VJ0 Q 1 7 UNP O08838 AMPH_RAT 324 330 SEQADV 2VJ0 LEU A 694 UNP P17427 VAL 694 CONFLICT SEQADV 2VJ0 ILE A 787 UNP P17427 VAL 787 CONFLICT SEQADV 2VJ0 GLY A 889 UNP P17427 VAL 889 CONFLICT SEQADV 2VJ0 ALA A 890 UNP P17427 LEU 890 CONFLICT SEQRES 1 A 250 GLY SER PRO GLY ILE LEU ALA PRO LEU ALA PRO GLY SER SEQRES 2 A 250 GLU ASP ASN PHE ALA ARG PHE VAL CYS LYS ASN ASN GLY SEQRES 3 A 250 VAL LEU PHE GLU ASN GLN LEU LEU GLN ILE GLY LEU LYS SEQRES 4 A 250 SER GLU PHE ARG GLN ASN LEU GLY ARG MET PHE ILE PHE SEQRES 5 A 250 TYR GLY ASN LYS THR SER THR GLN PHE LEU ASN PHE THR SEQRES 6 A 250 PRO THR LEU ILE CYS ALA ASP ASP LEU GLN THR ASN LEU SEQRES 7 A 250 ASN LEU GLN THR LYS PRO VAL ASP PRO THR VAL ASP GLY SEQRES 8 A 250 GLY ALA GLN VAL GLN GLN VAL ILE ASN ILE GLU CYS ILE SEQRES 9 A 250 SER ASP PHE THR GLU ALA PRO VAL LEU ASN ILE GLN PHE SEQRES 10 A 250 ARG TYR GLY GLY THR PHE GLN ASN VAL SER VAL LYS LEU SEQRES 11 A 250 PRO ILE THR LEU ASN LYS PHE PHE GLN PRO THR GLU MET SEQRES 12 A 250 ALA SER GLN ASP PHE PHE GLN ARG TRP LYS GLN LEU SER SEQRES 13 A 250 ASN PRO GLN GLN GLU VAL GLN ASN ILE PHE LYS ALA LYS SEQRES 14 A 250 HIS PRO MET ASP THR GLU ILE THR LYS ALA LYS ILE ILE SEQRES 15 A 250 GLY PHE GLY SER ALA LEU LEU GLU GLU VAL ASP PRO ASN SEQRES 16 A 250 PRO ALA ASN PHE VAL GLY ALA GLY ILE ILE HIS THR LYS SEQRES 17 A 250 THR THR GLN ILE GLY CYS LEU LEU ARG LEU GLU PRO ASN SEQRES 18 A 250 LEU GLN ALA GLN MET TYR ARG LEU THR LEU ARG THR SER SEQRES 19 A 250 LYS ASP THR VAL SER GLN ARG LEU CYS GLU LEU LEU SER SEQRES 20 A 250 GLU GLN PHE SEQRES 1 P 12 ASN PRO LYS GLY TRP VAL THR PHE GLU GLU GLU GLU SEQRES 1 Q 7 PHE GLU ASP ASN PHE VAL PRO HET BEN A1939 9 HET DTD A1940 8 HET SO4 A1941 5 HET SO4 A1942 5 HET SO4 A1943 5 HET CL A1944 1 HETNAM BEN BENZAMIDINE HETNAM DTD DITHIANE DIOL HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 4 BEN C7 H8 N2 FORMUL 5 DTD C4 H8 O2 S2 FORMUL 6 SO4 3(O4 S 2-) FORMUL 9 CL CL 1- FORMUL 10 HOH *343(H2 O) HELIX 1 1 GLY A 700 ARG A 707 1 8 HELIX 2 2 ALA A 759 ASN A 765 1 7 HELIX 3 3 THR A 821 LYS A 824 5 4 HELIX 4 4 ALA A 832 GLN A 842 1 11 HELIX 5 5 ASN A 845 GLN A 847 5 3 HELIX 6 6 ASP A 861 GLY A 873 1 13 HELIX 7 7 LYS A 923 GLU A 936 1 14 SHEET 1 AA 5 GLY A 714 GLU A 718 0 SHEET 2 AA 5 LEU A 722 ARG A 731 -1 O ILE A 724 N LEU A 716 SHEET 3 AA 5 LEU A 734 ASN A 743 -1 O LEU A 734 N ARG A 731 SHEET 4 AA 5 GLN A 782 CYS A 791 -1 O VAL A 783 N TYR A 741 SHEET 5 AA 5 LEU A 766 GLN A 769 -1 O ASN A 767 N GLU A 790 SHEET 1 AB 3 PHE A 749 ILE A 757 0 SHEET 2 AB 3 VAL A 800 TYR A 807 -1 O VAL A 800 N ILE A 757 SHEET 3 AB 3 THR A 810 LYS A 817 -1 O THR A 810 N TYR A 807 SHEET 1 AC 3 PHE A 826 PRO A 828 0 SHEET 2 AC 3 PHE A 887 HIS A 894 -1 O ILE A 892 N GLN A 827 SHEET 3 AC 3 ALA A 875 LEU A 876 -1 O ALA A 875 N ALA A 890 SHEET 1 AD 5 PHE A 826 PRO A 828 0 SHEET 2 AD 5 PHE A 887 HIS A 894 -1 O ILE A 892 N GLN A 827 SHEET 3 AD 5 GLN A 899 ASN A 909 -1 O ILE A 900 N ILE A 893 SHEET 4 AD 5 MET A 914 THR A 921 -1 O MET A 914 N ASN A 909 SHEET 5 AD 5 GLU A 849 LYS A 855 -1 O VAL A 850 N LEU A 919 SITE 1 AC1 8 ARG A 839 HIS A 858 PRO A 859 GLY A 901 SITE 2 AC1 8 CYS A 902 LEU A 903 HOH A2321 HOH A2322 SITE 1 AC2 7 GLU A 729 GLY A 735 GLU A 849 HOH A2225 SITE 2 AC2 7 HOH A2323 ASP Q 3 HOH Q2004 SITE 1 AC3 6 GLY A 700 SER A 701 GLU A 702 ASP A 703 SITE 2 AC3 6 HOH A2038 HOH A2324 SITE 1 AC4 5 THR A 745 SER A 746 THR A 747 TYR A 807 SITE 2 AC4 5 HOH A2326 SITE 1 AC5 3 LYS A 711 ASN A 712 ASN A 713 SITE 1 AC6 4 ASN A 765 PHE A 795 THR A 796 GLU A 797 CRYST1 144.508 66.980 39.730 90.00 94.92 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006920 0.000000 0.000596 0.00000 SCALE2 0.000000 0.014930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025263 0.00000