HEADER PHOTOSYNTHESIS 12-DEC-07 2VJR TITLE THE STRUCTURE OF PHYCOCYANIN FROM GLOEOBACTER VIOLACEUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHYCOCYANIN ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: PHYCOCYANIN BETA CHAIN; COMPND 6 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLOEOBACTER VIOLACEUS; SOURCE 3 ORGANISM_TAXID: 33072; SOURCE 4 STRAIN: PCC7421; SOURCE 5 OTHER_DETAILS: PASTEUR CULTURE COLLECTION; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: GLOEOBACTER VIOLACEUS; SOURCE 8 ORGANISM_TAXID: 33072; SOURCE 9 STRAIN: PCC7421; SOURCE 10 OTHER_DETAILS: PASTEUR CULTURE COLLECTION KEYWDS PHOTOSYNTHESIS, LIGHT HARVESTING EXPDTA X-RAY DIFFRACTION AUTHOR J.W.MURRAY,S.BENSON,J.NIELD,J.BARBER REVDAT 6 13-NOV-24 2VJR 1 REMARK REVDAT 5 13-DEC-23 2VJR 1 REMARK REVDAT 4 08-MAY-19 2VJR 1 REMARK LINK REVDAT 3 13-JUL-11 2VJR 1 VERSN REVDAT 2 24-FEB-09 2VJR 1 VERSN REVDAT 1 25-MAR-08 2VJR 0 JRNL AUTH J.W.MURRAY,S.BENSON,J.NIELD,J.BARBER JRNL TITL THE STRUCTURES OF THE PHYCOBILIPROTEINS OF GLOEOBACTER JRNL TITL 2 VIOLACEUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 101.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 14301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 766 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1025 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.4180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2536 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 129 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : 0.78000 REMARK 3 B12 (A**2) : -0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.500 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.309 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.218 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.017 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2713 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1764 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3686 ; 1.982 ; 2.019 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4295 ; 1.010 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 5.738 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;37.852 ;24.261 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 430 ;16.588 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;20.763 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 408 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3066 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 548 ; 0.012 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 695 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1852 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1325 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1400 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 91 ; 0.188 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 29 ; 0.157 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 36 ; 0.205 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.141 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2141 ; 0.721 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2640 ; 0.814 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1297 ; 1.235 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1046 ; 1.965 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 162 REMARK 3 RESIDUE RANGE : A 1082 A 1082 REMARK 3 ORIGIN FOR THE GROUP (A): -21.0460 -36.1380 -22.3200 REMARK 3 T TENSOR REMARK 3 T11: 0.2263 T22: 0.1712 REMARK 3 T33: -0.1313 T12: 0.1518 REMARK 3 T13: 0.0248 T23: -0.0433 REMARK 3 L TENSOR REMARK 3 L11: 3.0993 L22: 1.4136 REMARK 3 L33: 1.7980 L12: 0.5987 REMARK 3 L13: 0.2105 L23: 0.0909 REMARK 3 S TENSOR REMARK 3 S11: -0.0343 S12: -0.1439 S13: 0.3810 REMARK 3 S21: 0.0497 S22: 0.0343 S23: 0.2478 REMARK 3 S31: -0.5289 S32: -0.4085 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 172 REMARK 3 RESIDUE RANGE : B 1082 B 1153 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8280 -40.9230 -11.0520 REMARK 3 T TENSOR REMARK 3 T11: 0.1786 T22: 0.1221 REMARK 3 T33: -0.1407 T12: -0.0787 REMARK 3 T13: -0.0317 T23: -0.0660 REMARK 3 L TENSOR REMARK 3 L11: 2.2381 L22: 1.2903 REMARK 3 L33: 1.3546 L12: -1.1190 REMARK 3 L13: 0.7552 L23: 0.2842 REMARK 3 S TENSOR REMARK 3 S11: -0.1097 S12: -0.1972 S13: 0.0616 REMARK 3 S21: 0.1958 S22: -0.0179 S23: 0.0719 REMARK 3 S31: -0.3071 S32: 0.0648 S33: 0.1276 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VJR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1290034745. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28300 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16967 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 29.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 21.11 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 34.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 20.96 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1JBO REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 33.3 MM LITHIUM SULFATE, 17 MM TRIS REMARK 280 HYDROCHLORIDE PH 8.5, 5% W/V PEG 4K, MIXED WITH AN EQUAL VOLUME REMARK 280 OF PROTEIN SOLUTION. HANGING DROP VAPOUR DIFFUSION., VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.08150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.08150 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.08150 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 58.08150 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 58.08150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 58.08150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 45640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 90480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -341.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 -58.76900 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 -101.79089 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -58.08150 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -58.08150 REMARK 350 BIOMT1 4 -0.500000 -0.866025 0.000000 -58.76900 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 -101.79089 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -0.500000 0.866025 0.000000 58.76900 REMARK 350 BIOMT2 5 -0.866025 -0.500000 0.000000 -101.79089 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 58.76900 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 -101.79089 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -58.08150 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 75 -150.56 -85.20 REMARK 500 CYS B 109 -55.27 -127.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYC A1082 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYC B1082 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYC B1153 DBREF 2VJR A 1 162 UNP Q7M7F7 Q7M7F7_GLOVI 1 162 DBREF 2VJR B 1 172 UNP Q7M7C7 Q7M7C7_GLOVI 1 172 SEQRES 1 A 162 MET LYS THR VAL ILE THR GLU VAL ILE ALA SER ALA ASP SEQRES 2 A 162 SER GLN GLY ARG PHE LEU ASN ASN THR GLU LEU GLN ALA SEQRES 3 A 162 ALA ASN GLY ARG PHE GLN ARG ALA THR ALA SER MET GLU SEQRES 4 A 162 ALA ALA ARG ALA LEU THR SER ASN ALA ASP SER LEU VAL SEQRES 5 A 162 LYS GLY ALA VAL GLN GLU VAL TYR ASN LYS PHE PRO TYR SEQRES 6 A 162 LEU THR GLN PRO GLY GLN MET GLY TYR GLY ASP THR ASN SEQRES 7 A 162 GLN ALA LYS CYS ALA ARG ASP ILE SER HIS TYR LEU ARG SEQRES 8 A 162 PHE ILE THR TYR SER LEU VAL ALA GLY GLY THR GLY PRO SEQRES 9 A 162 LEU ASP ASP TYR ILE VAL ALA GLY LEU ARG GLU VAL ASN SEQRES 10 A 162 ARG THR PHE ASN LEU SER PRO SER TRP TYR ILE GLU ALA SEQRES 11 A 162 LEU LYS HIS ILE LYS GLY LYS VAL GLY SER GLN LEU SER SEQRES 12 A 162 GLY GLN PRO LEU THR GLU ALA ASN ALA TYR ILE ASP TYR SEQRES 13 A 162 CYS ILE ASN ALA LEU SER SEQRES 1 B 172 MET GLN ASP ALA PHE THR LYS ALA ILE VAL ALA ALA ASP SEQRES 2 B 172 LEU ARG GLY SER PHE LEU SER GLU GLN GLU LEU ASN GLN SEQRES 3 B 172 LEU THR ASN LEU VAL LYS GLU SER ASN LYS ARG LEU ASP SEQRES 4 B 172 ALA VAL ASN ALA ILE THR GLY ASN ALA ALA GLU ILE ILE SEQRES 5 B 172 SER ASP ALA ALA HIS LYS LEU PHE ALA GLU GLN THR ASP SEQRES 6 B 172 LEU ILE ARG PRO GLY GLY ASN ALA TYR PRO ASN ARG ARG SEQRES 7 B 172 MET ALA ALA CYS LEU ARG ASP MET GLU ILE ILE LEU ARG SEQRES 8 B 172 TYR VAL SER TYR ALA LEU LEU ALA GLY ASP ALA SER VAL SEQRES 9 B 172 LEU GLU ASP ARG CYS LEU ASN GLY LEU LYS GLU THR TYR SEQRES 10 B 172 VAL ALA LEU GLY THR PRO THR ARG SER VAL ALA ARG ALA SEQRES 11 B 172 VAL GLN LEU MET LYS GLU THR ALA ILE GLY TYR VAL ASN SEQRES 12 B 172 SER PRO SER GLY VAL THR ARG GLY ASP CYS SER ALA LEU SEQRES 13 B 172 VAL ASN GLU ALA ALA THR TYR PHE ASP LYS ALA ALA ALA SEQRES 14 B 172 SER ILE ALA HET CYC A1082 43 HET CYC B1082 43 HET CYC B1153 43 HETNAM CYC PHYCOCYANOBILIN FORMUL 3 CYC 3(C33 H40 N4 O6) FORMUL 6 HOH *84(H2 O) HELIX 1 1 THR A 3 SER A 14 1 12 HELIX 2 2 ASN A 20 PHE A 63 1 44 HELIX 3 3 PRO A 64 GLN A 68 5 5 HELIX 4 4 TYR A 74 GLY A 100 1 27 HELIX 5 5 THR A 102 ILE A 109 1 8 HELIX 6 6 GLY A 112 PHE A 120 1 9 HELIX 7 7 SER A 123 VAL A 138 1 16 HELIX 8 8 GLY A 144 LEU A 161 1 18 HELIX 9 9 ASP B 3 ARG B 15 1 13 HELIX 10 10 SER B 20 GLU B 33 1 14 HELIX 11 11 GLU B 33 GLY B 46 1 14 HELIX 12 12 ASN B 47 GLN B 63 1 17 HELIX 13 13 PRO B 75 GLY B 100 1 26 HELIX 14 14 ALA B 102 CYS B 109 1 8 HELIX 15 15 GLY B 112 GLY B 121 1 10 HELIX 16 16 PRO B 123 SER B 144 1 22 HELIX 17 17 CYS B 153 ALA B 172 1 20 LINK SG CYS A 82 CAC CYC A1082 1555 1555 1.81 LINK SG CYS B 82 CAC CYC B1082 1555 1555 1.85 LINK SG CYS B 153 CAC CYC B1153 1555 1555 1.82 CISPEP 1 TYR B 74 PRO B 75 0 -3.96 SITE 1 AC1 23 TYR A 60 LEU A 66 MET A 72 GLY A 73 SITE 2 AC1 23 ASN A 78 LYS A 81 CYS A 82 ARG A 84 SITE 3 AC1 23 ASP A 85 HIS A 88 TYR A 89 TYR A 108 SITE 4 AC1 23 PHE A 120 LEU A 122 TRP A 126 TYR A 127 SITE 5 AC1 23 HOH A2039 HIS B 57 ILE B 67 TYR B 74 SITE 6 AC1 23 PRO B 75 ASN B 76 HOH B2017 SITE 1 AC2 14 ASN B 72 ALA B 73 ARG B 77 ARG B 78 SITE 2 AC2 14 ALA B 81 CYS B 82 ARG B 84 ASP B 85 SITE 3 AC2 14 ILE B 88 ARG B 108 LEU B 120 SER B 126 SITE 4 AC2 14 VAL B 127 HOH B2045 SITE 1 AC3 17 ASN A 21 LEU A 24 ASN A 28 ARG A 33 SITE 2 AC3 17 GLN A 145 ASN B 35 LYS B 36 LEU B 38 SITE 3 AC3 17 ASP B 39 VAL B 142 ASN B 143 PRO B 145 SITE 4 AC3 17 VAL B 148 THR B 149 ARG B 150 GLY B 151 SITE 5 AC3 17 CYS B 153 CRYST1 117.538 117.538 116.163 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008508 0.004912 0.000000 0.00000 SCALE2 0.000000 0.009824 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008609 0.00000