data_2VKF # _entry.id 2VKF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2VKF pdb_00002vkf 10.2210/pdb2vkf/pdb PDBE EBI-34830 ? ? WWPDB D_1290034830 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2CCB unspecified 'COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN -LIKE LIGANDS' PDB 2CCC unspecified 'COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN -LIKE LIGANDS' PDB 2CIF unspecified 'COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN -LIKE LIGANDS' PDB 1MOG unspecified 'CRYSTAL STRUCTURE OF H. SALINARUM DODECIN' PDB 2CC6 unspecified 'COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN -LIKE LIGANDS' PDB 2CC7 unspecified 'COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN -LIKE LIGANDS' PDB 2CC8 unspecified 'COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN -LIKE LIGANDS' PDB 2CC9 unspecified 'COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN -LIKE LIGANDS' PDB 2CIE unspecified 'COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN -LIKE LIGANDS' PDB 2CJC unspecified 'COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN -LIKE LIGANDS' PDB 2VKG unspecified 'COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN -LIKE LIGANDS' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VKF _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2007-12-19 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Grininger, M.' 1 'Noell, G.' 2 'Trawoeger, S.' 3 'Sinner, E.' 4 'Oesterhelt, D.' 5 # _citation.id primary _citation.title 'Electrochemical Switching of the Flavoprotein Dodecin at Gold Surfaces Modified by Flavin-DNA Hybrid Linkers' _citation.journal_abbrev Biointerphases _citation.journal_volume 3 _citation.page_first 51 _citation.page_last ? _citation.year 2008 _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN 1934-8630 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20408700 _citation.pdbx_database_id_DOI 10.1116/1.2965134 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Grininger, M.' 1 ? primary 'Noell, G.' 2 ? primary 'Trawoeger, S.' 3 ? primary 'Sinner, E.' 4 ? primary 'Oesterhelt, D.' 5 ? # _cell.entry_id 2VKF _cell.length_a 141.704 _cell.length_b 141.704 _cell.length_c 141.704 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VKF _symmetry.space_group_name_H-M 'F 41 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 210 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man DODECIN 6722.342 1 ? YES 'RESIDUES 11-58,61-74' 'LIGAND BOUND' 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 6 non-polymer syn "2'-deoxy-5'-O-{[2-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)ethyl]carbamoyl}guanosine" 578.537 1 ? ? ? ? 7 water nat water 18.015 86 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code VFKKVLLTGTSEESFTAAADDAIDRAEDTLDNVVWAEVVDQGVAIGAVRTYQTEVQVAFELD _entity_poly.pdbx_seq_one_letter_code_can VFKKVLLTGTSEESFTAAADDAIDRAEDTLDNVVWAEVVDQGVAIGAVRTYQTEVQVAFELD _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 PHE n 1 3 LYS n 1 4 LYS n 1 5 VAL n 1 6 LEU n 1 7 LEU n 1 8 THR n 1 9 GLY n 1 10 THR n 1 11 SER n 1 12 GLU n 1 13 GLU n 1 14 SER n 1 15 PHE n 1 16 THR n 1 17 ALA n 1 18 ALA n 1 19 ALA n 1 20 ASP n 1 21 ASP n 1 22 ALA n 1 23 ILE n 1 24 ASP n 1 25 ARG n 1 26 ALA n 1 27 GLU n 1 28 ASP n 1 29 THR n 1 30 LEU n 1 31 ASP n 1 32 ASN n 1 33 VAL n 1 34 VAL n 1 35 TRP n 1 36 ALA n 1 37 GLU n 1 38 VAL n 1 39 VAL n 1 40 ASP n 1 41 GLN n 1 42 GLY n 1 43 VAL n 1 44 ALA n 1 45 ILE n 1 46 GLY n 1 47 ALA n 1 48 VAL n 1 49 ARG n 1 50 THR n 1 51 TYR n 1 52 GLN n 1 53 THR n 1 54 GLU n 1 55 VAL n 1 56 GLN n 1 57 VAL n 1 58 ALA n 1 59 PHE n 1 60 GLU n 1 61 LEU n 1 62 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain R1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HALOBACTERIUM SALINARUM' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 478009 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET22B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'GERMAN COLLECTION OF MICROORGANISMS (DSM 671)' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9HPW4_HALSA _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q9HPW4 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2VKF A 1 ? 48 ? Q9HPW4 11 ? 58 ? 2 49 2 1 2VKF A 49 ? 62 ? Q9HPW4 61 ? 74 ? 50 63 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2VKF _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 44 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9HPW4 _struct_ref_seq_dif.db_mon_id GLU _struct_ref_seq_dif.pdbx_seq_db_seq_num 54 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 45 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CF2 non-polymer . "2'-deoxy-5'-O-{[2-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)ethyl]carbamoyl}guanosine" ? 'C25 H26 N10 O7' 578.537 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2VKF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.41 _exptl_crystal.density_percent_sol 63.64 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.2 M MGCL2, 2.0 M NACL, 0.1 M NA HEPES PH 7.5 AND 30% PEG400' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2006-08-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.033000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_wavelength 1.033000 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2VKF _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.00 _reflns.d_resolution_high 1.69 _reflns.number_obs 171130 _reflns.number_all ? _reflns.percent_possible_obs 95.4 _reflns.pdbx_Rmerge_I_obs 0.09 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.80 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 12.7 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.69 _reflns_shell.d_res_low 1.80 _reflns_shell.percent_possible_all 79.0 _reflns_shell.Rmerge_I_obs 0.52 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.10 _reflns_shell.pdbx_redundancy 8.4 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2VKF _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 12770 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.03 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 96.6 _refine.ls_R_factor_obs 0.186 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.184 _refine.ls_R_factor_R_free 0.213 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.200 _refine.ls_number_reflns_R_free 703 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.952 _refine.correlation_coeff_Fo_to_Fc_free 0.951 _refine.B_iso_mean 18.22 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 2CCC' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.079 _refine.pdbx_overall_ESU_R_Free 0.082 _refine.overall_SU_ML 0.050 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.474 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 473 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 51 _refine_hist.number_atoms_solvent 86 _refine_hist.number_atoms_total 610 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 19.03 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.022 ? 542 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.458 2.041 ? 750 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.030 5.000 ? 65 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 30.182 26.250 ? 24 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.584 15.000 ? 77 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10.926 15.000 ? 2 'X-RAY DIFFRACTION' ? r_chiral_restr 0.095 0.200 ? 88 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 409 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.209 0.200 ? 190 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.303 0.200 ? 376 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.204 0.200 ? 56 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.188 0.200 ? 70 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.224 0.200 ? 25 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.843 1.500 ? 315 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.588 2.000 ? 512 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.985 3.000 ? 308 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.717 4.500 ? 237 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.74 _refine_ls_shell.number_reflns_R_work 730 _refine_ls_shell.R_factor_R_work 0.2670 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.3240 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 44 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2VKF _struct.title 'COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2VKF _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text 'BIOTECHNOLOGICAL APPLICATION OF DODECIN BINDING PROPERTIES, FLAVIN-DNA LIGAND HYBRID, ELECTRON TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 6 ? H N N 7 ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id SER _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 14 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LEU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 30 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id SER _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 15 _struct_conf.end_auth_comp_id LEU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 31 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A GLU 13 OE2 ? ? ? 1_555 C MG . MG ? ? A GLU 14 A MG 1062 1_555 ? ? ? ? ? ? ? 2.095 ? ? metalc2 metalc ? ? A ASP 40 OD2 ? ? ? 80_555 B MG . MG ? ? A ASP 41 A MG 1061 1_555 ? ? ? ? ? ? ? 2.211 ? ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 1061 A HOH 2053 1_555 ? ? ? ? ? ? ? 2.175 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 1061 A HOH 2054 1_555 ? ? ? ? ? ? ? 2.223 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 1061 A HOH 2058 80_555 ? ? ? ? ? ? ? 2.307 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 1061 A HOH 2059 80_555 ? ? ? ? ? ? ? 2.031 ? ? metalc7 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 1061 A HOH 2076 80_555 ? ? ? ? ? ? ? 1.977 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 1062 A HOH 2019 1_555 ? ? ? ? ? ? ? 2.195 ? ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 1062 A HOH 2022 1_555 ? ? ? ? ? ? ? 2.206 ? ? metalc10 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 1062 A HOH 2023 1_555 ? ? ? ? ? ? ? 2.099 ? ? metalc11 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 1062 A HOH 2027 24_555 ? ? ? ? ? ? ? 2.077 ? ? metalc12 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 1062 A HOH 2036 24_555 ? ? ? ? ? ? ? 2.131 ? ? metalc13 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 1063 A HOH 2004 80_555 ? ? ? ? ? ? ? 2.574 ? ? metalc14 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 1063 A HOH 2004 59_555 ? ? ? ? ? ? ? 2.574 ? ? metalc15 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 1063 A HOH 2004 1_555 ? ? ? ? ? ? ? 2.574 ? ? metalc16 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 1063 A HOH 2079 1_555 ? ? ? ? ? ? ? 2.332 ? ? metalc17 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 1063 A HOH 2079 80_555 ? ? ? ? ? ? ? 2.332 ? ? metalc18 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 1063 A HOH 2079 59_555 ? ? ? ? ? ? ? 2.332 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 PHE A 2 ? SER A 11 ? PHE A 3 SER A 12 AA 2 ARG A 49 ? GLU A 60 ? ARG A 50 GLU A 61 AA 3 VAL A 33 ? ILE A 45 ? VAL A 34 ILE A 46 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N SER A 11 ? N SER A 12 O TYR A 51 ? O TYR A 52 AA 2 3 O ALA A 58 ? O ALA A 59 N VAL A 34 ? N VAL A 35 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 1061 ? 6 'BINDING SITE FOR RESIDUE MG A 1061' AC2 Software A MG 1062 ? 6 'BINDING SITE FOR RESIDUE MG A 1062' AC3 Software A NA 1063 ? 9 'BINDING SITE FOR RESIDUE NA A 1063' AC4 Software A CL 1064 ? 9 'BINDING SITE FOR RESIDUE CL A 1064' AC5 Software A SO4 1065 ? 12 'BINDING SITE FOR RESIDUE SO4 A 1065' AC6 Software A CF2 1066 ? 15 'BINDING SITE FOR RESIDUE CF2 A 1066' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP A 40 ? ASP A 41 . ? 80_555 ? 2 AC1 6 HOH H . ? HOH A 2053 . ? 1_555 ? 3 AC1 6 HOH H . ? HOH A 2054 . ? 1_555 ? 4 AC1 6 HOH H . ? HOH A 2058 . ? 80_555 ? 5 AC1 6 HOH H . ? HOH A 2059 . ? 80_555 ? 6 AC1 6 HOH H . ? HOH A 2076 . ? 80_555 ? 7 AC2 6 GLU A 13 ? GLU A 14 . ? 1_555 ? 8 AC2 6 HOH H . ? HOH A 2019 . ? 1_555 ? 9 AC2 6 HOH H . ? HOH A 2022 . ? 1_555 ? 10 AC2 6 HOH H . ? HOH A 2023 . ? 1_555 ? 11 AC2 6 HOH H . ? HOH A 2027 . ? 24_555 ? 12 AC2 6 HOH H . ? HOH A 2036 . ? 24_555 ? 13 AC3 9 CL E . ? CL A 1064 . ? 1_555 ? 14 AC3 9 CL E . ? CL A 1064 . ? 59_555 ? 15 AC3 9 CL E . ? CL A 1064 . ? 80_555 ? 16 AC3 9 HOH H . ? HOH A 2004 . ? 80_555 ? 17 AC3 9 HOH H . ? HOH A 2004 . ? 59_555 ? 18 AC3 9 HOH H . ? HOH A 2004 . ? 1_555 ? 19 AC3 9 HOH H . ? HOH A 2079 . ? 80_555 ? 20 AC3 9 HOH H . ? HOH A 2079 . ? 1_555 ? 21 AC3 9 HOH H . ? HOH A 2079 . ? 59_555 ? 22 AC4 9 GLN A 56 ? GLN A 57 . ? 80_555 ? 23 AC4 9 GLN A 56 ? GLN A 57 . ? 59_555 ? 24 AC4 9 GLN A 56 ? GLN A 57 . ? 1_555 ? 25 AC4 9 NA D . ? NA A 1063 . ? 59_555 ? 26 AC4 9 NA D . ? NA A 1063 . ? 80_555 ? 27 AC4 9 NA D . ? NA A 1063 . ? 1_555 ? 28 AC4 9 HOH H . ? HOH A 2034 . ? 59_555 ? 29 AC4 9 HOH H . ? HOH A 2034 . ? 80_555 ? 30 AC4 9 HOH H . ? HOH A 2034 . ? 1_555 ? 31 AC5 12 SER A 14 ? SER A 15 . ? 1_555 ? 32 AC5 12 SER A 14 ? SER A 15 . ? 5_555 ? 33 AC5 12 SER A 14 ? SER A 15 . ? 9_555 ? 34 AC5 12 THR A 16 ? THR A 17 . ? 9_555 ? 35 AC5 12 THR A 16 ? THR A 17 . ? 1_555 ? 36 AC5 12 THR A 16 ? THR A 17 . ? 5_555 ? 37 AC5 12 HOH H . ? HOH A 2060 . ? 1_555 ? 38 AC5 12 HOH H . ? HOH A 2060 . ? 5_555 ? 39 AC5 12 HOH H . ? HOH A 2060 . ? 9_555 ? 40 AC5 12 HOH H . ? HOH A 2082 . ? 9_555 ? 41 AC5 12 HOH H . ? HOH A 2082 . ? 5_555 ? 42 AC5 12 HOH H . ? HOH A 2082 . ? 1_555 ? 43 AC6 15 PHE A 2 ? PHE A 3 . ? 1_555 ? 44 AC6 15 VAL A 34 ? VAL A 35 . ? 1_555 ? 45 AC6 15 TRP A 35 ? TRP A 36 . ? 1_555 ? 46 AC6 15 VAL A 43 ? VAL A 44 . ? 5_555 ? 47 AC6 15 ALA A 44 ? ALA A 45 . ? 5_555 ? 48 AC6 15 ILE A 45 ? ILE A 46 . ? 5_555 ? 49 AC6 15 GLY A 46 ? GLY A 47 . ? 5_555 ? 50 AC6 15 GLN A 52 ? GLN A 53 . ? 5_555 ? 51 AC6 15 GLN A 52 ? GLN A 53 . ? 80_555 ? 52 AC6 15 GLU A 60 ? GLU A 61 . ? 1_555 ? 53 AC6 15 HOH H . ? HOH A 2054 . ? 1_555 ? 54 AC6 15 HOH H . ? HOH A 2064 . ? 5_555 ? 55 AC6 15 HOH H . ? HOH A 2075 . ? 80_555 ? 56 AC6 15 HOH H . ? HOH A 2083 . ? 1_555 ? 57 AC6 15 HOH H . ? HOH A 2084 . ? 1_555 ? # _database_PDB_matrix.entry_id 2VKF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2VKF _atom_sites.fract_transf_matrix[1][1] 0.007057 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007057 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007057 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL MG N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 2 2 VAL VAL A . n A 1 2 PHE 2 3 3 PHE PHE A . n A 1 3 LYS 3 4 4 LYS LYS A . n A 1 4 LYS 4 5 5 LYS LYS A . n A 1 5 VAL 5 6 6 VAL VAL A . n A 1 6 LEU 6 7 7 LEU LEU A . n A 1 7 LEU 7 8 8 LEU LEU A . n A 1 8 THR 8 9 9 THR THR A . n A 1 9 GLY 9 10 10 GLY GLY A . n A 1 10 THR 10 11 11 THR THR A . n A 1 11 SER 11 12 12 SER SER A . n A 1 12 GLU 12 13 13 GLU GLU A . n A 1 13 GLU 13 14 14 GLU GLU A . n A 1 14 SER 14 15 15 SER SER A . n A 1 15 PHE 15 16 16 PHE PHE A . n A 1 16 THR 16 17 17 THR THR A . n A 1 17 ALA 17 18 18 ALA ALA A . n A 1 18 ALA 18 19 19 ALA ALA A . n A 1 19 ALA 19 20 20 ALA ALA A . n A 1 20 ASP 20 21 21 ASP ASP A . n A 1 21 ASP 21 22 22 ASP ASP A . n A 1 22 ALA 22 23 23 ALA ALA A . n A 1 23 ILE 23 24 24 ILE ILE A . n A 1 24 ASP 24 25 25 ASP ASP A . n A 1 25 ARG 25 26 26 ARG ARG A . n A 1 26 ALA 26 27 27 ALA ALA A . n A 1 27 GLU 27 28 28 GLU GLU A . n A 1 28 ASP 28 29 29 ASP ASP A . n A 1 29 THR 29 30 30 THR THR A . n A 1 30 LEU 30 31 31 LEU LEU A . n A 1 31 ASP 31 32 32 ASP ASP A . n A 1 32 ASN 32 33 33 ASN ASN A . n A 1 33 VAL 33 34 34 VAL VAL A . n A 1 34 VAL 34 35 35 VAL VAL A . n A 1 35 TRP 35 36 36 TRP TRP A . n A 1 36 ALA 36 37 37 ALA ALA A . n A 1 37 GLU 37 38 38 GLU GLU A . n A 1 38 VAL 38 39 39 VAL VAL A . n A 1 39 VAL 39 40 40 VAL VAL A . n A 1 40 ASP 40 41 41 ASP ASP A . n A 1 41 GLN 41 42 42 GLN GLN A . n A 1 42 GLY 42 43 43 GLY GLY A . n A 1 43 VAL 43 44 44 VAL VAL A . n A 1 44 ALA 44 45 45 ALA ALA A . n A 1 45 ILE 45 46 46 ILE ILE A . n A 1 46 GLY 46 47 47 GLY GLY A . n A 1 47 ALA 47 48 48 ALA ALA A . n A 1 48 VAL 48 49 49 VAL VAL A . n A 1 49 ARG 49 50 50 ARG ARG A . n A 1 50 THR 50 51 51 THR THR A . n A 1 51 TYR 51 52 52 TYR TYR A . n A 1 52 GLN 52 53 53 GLN GLN A . n A 1 53 THR 53 54 54 THR THR A . n A 1 54 GLU 54 55 55 GLU GLU A . n A 1 55 VAL 55 56 56 VAL VAL A . n A 1 56 GLN 56 57 57 GLN GLN A . n A 1 57 VAL 57 58 58 VAL VAL A . n A 1 58 ALA 58 59 59 ALA ALA A . n A 1 59 PHE 59 60 60 PHE PHE A . n A 1 60 GLU 60 61 61 GLU GLU A . n A 1 61 LEU 61 62 62 LEU LEU A . n A 1 62 ASP 62 63 63 ASP ASP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 1061 1061 MG MG A . C 2 MG 1 1062 1062 MG MG A . D 3 NA 1 1063 1063 NA NA A . E 4 CL 1 1064 1064 CL CL A . F 5 SO4 1 1065 1065 SO4 SO4 A . G 6 CF2 1 1066 1066 CF2 CF2 A . H 7 HOH 1 2001 2001 HOH HOH A . H 7 HOH 2 2002 2002 HOH HOH A . H 7 HOH 3 2003 2003 HOH HOH A . H 7 HOH 4 2004 2004 HOH HOH A . H 7 HOH 5 2005 2005 HOH HOH A . H 7 HOH 6 2006 2006 HOH HOH A . H 7 HOH 7 2007 2007 HOH HOH A . H 7 HOH 8 2008 2008 HOH HOH A . H 7 HOH 9 2009 2009 HOH HOH A . H 7 HOH 10 2010 2010 HOH HOH A . H 7 HOH 11 2011 2011 HOH HOH A . H 7 HOH 12 2012 2012 HOH HOH A . H 7 HOH 13 2013 2013 HOH HOH A . H 7 HOH 14 2014 2014 HOH HOH A . H 7 HOH 15 2015 2015 HOH HOH A . H 7 HOH 16 2016 2016 HOH HOH A . H 7 HOH 17 2017 2017 HOH HOH A . H 7 HOH 18 2018 2018 HOH HOH A . H 7 HOH 19 2019 2019 HOH HOH A . H 7 HOH 20 2020 2020 HOH HOH A . H 7 HOH 21 2021 2021 HOH HOH A . H 7 HOH 22 2022 2022 HOH HOH A . H 7 HOH 23 2023 2023 HOH HOH A . H 7 HOH 24 2024 2024 HOH HOH A . H 7 HOH 25 2025 2025 HOH HOH A . H 7 HOH 26 2026 2026 HOH HOH A . H 7 HOH 27 2027 2027 HOH HOH A . H 7 HOH 28 2028 2028 HOH HOH A . H 7 HOH 29 2029 2029 HOH HOH A . H 7 HOH 30 2030 2030 HOH HOH A . H 7 HOH 31 2031 2031 HOH HOH A . H 7 HOH 32 2032 2032 HOH HOH A . H 7 HOH 33 2033 2033 HOH HOH A . H 7 HOH 34 2034 2034 HOH HOH A . H 7 HOH 35 2035 2035 HOH HOH A . H 7 HOH 36 2036 2036 HOH HOH A . H 7 HOH 37 2037 2037 HOH HOH A . H 7 HOH 38 2038 2038 HOH HOH A . H 7 HOH 39 2039 2039 HOH HOH A . H 7 HOH 40 2040 2040 HOH HOH A . H 7 HOH 41 2041 2041 HOH HOH A . H 7 HOH 42 2042 2042 HOH HOH A . H 7 HOH 43 2043 2043 HOH HOH A . H 7 HOH 44 2044 2044 HOH HOH A . H 7 HOH 45 2045 2045 HOH HOH A . H 7 HOH 46 2046 2046 HOH HOH A . H 7 HOH 47 2047 2047 HOH HOH A . H 7 HOH 48 2048 2048 HOH HOH A . H 7 HOH 49 2049 2049 HOH HOH A . H 7 HOH 50 2050 2050 HOH HOH A . H 7 HOH 51 2051 2051 HOH HOH A . H 7 HOH 52 2052 2052 HOH HOH A . H 7 HOH 53 2053 2053 HOH HOH A . H 7 HOH 54 2054 2054 HOH HOH A . H 7 HOH 55 2055 2055 HOH HOH A . H 7 HOH 56 2056 2056 HOH HOH A . H 7 HOH 57 2057 2057 HOH HOH A . H 7 HOH 58 2058 2058 HOH HOH A . H 7 HOH 59 2059 2059 HOH HOH A . H 7 HOH 60 2060 2060 HOH HOH A . H 7 HOH 61 2061 2061 HOH HOH A . H 7 HOH 62 2062 2062 HOH HOH A . H 7 HOH 63 2063 2063 HOH HOH A . H 7 HOH 64 2064 2064 HOH HOH A . H 7 HOH 65 2065 2065 HOH HOH A . H 7 HOH 66 2066 2066 HOH HOH A . H 7 HOH 67 2067 2067 HOH HOH A . H 7 HOH 68 2068 2068 HOH HOH A . H 7 HOH 69 2069 2069 HOH HOH A . H 7 HOH 70 2070 2070 HOH HOH A . H 7 HOH 71 2071 2071 HOH HOH A . H 7 HOH 72 2072 2072 HOH HOH A . H 7 HOH 73 2073 2073 HOH HOH A . H 7 HOH 74 2074 2074 HOH HOH A . H 7 HOH 75 2075 2075 HOH HOH A . H 7 HOH 76 2076 2076 HOH HOH A . H 7 HOH 77 2077 2077 HOH HOH A . H 7 HOH 78 2078 2078 HOH HOH A . H 7 HOH 79 2079 2079 HOH HOH A . H 7 HOH 80 2080 2080 HOH HOH A . H 7 HOH 81 2081 2081 HOH HOH A . H 7 HOH 82 2082 2082 HOH HOH A . H 7 HOH 83 2083 2083 HOH HOH A . H 7 HOH 84 2084 2084 HOH HOH A . H 7 HOH 85 2085 2085 HOH HOH A . H 7 HOH 86 2086 2086 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 33160 ? 1 MORE -599.6 ? 1 'SSA (A^2)' 26170 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 z,x,y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 3 'crystal symmetry operation' 9_555 y,z,x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 4 'crystal symmetry operation' 80_555 -z,x,-y 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 5 'crystal symmetry operation' 59_555 y,-z,-x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 6 'crystal symmetry operation' 82_555 -y,z,-x 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 7 'crystal symmetry operation' 52_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 8 'crystal symmetry operation' 75_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 9 'crystal symmetry operation' 54_555 z,-x,-y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 10 'crystal symmetry operation' 36_555 -y,-z,x 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 11 'crystal symmetry operation' 31_555 -z,-x,y 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 12 'crystal symmetry operation' 26_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A NA 1063 ? D NA . 2 1 A CL 1064 ? E CL . 3 1 A SO4 1065 ? F SO4 . 4 1 A SO4 1065 ? F SO4 . 5 1 A HOH 2001 ? H HOH . 6 1 A HOH 2004 ? H HOH . 7 1 A HOH 2034 ? H HOH . 8 1 A HOH 2060 ? H HOH . 9 1 A HOH 2082 ? H HOH . 10 1 A HOH 2086 ? H HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE2 ? A GLU 13 ? A GLU 14 ? 1_555 MG ? C MG . ? A MG 1062 ? 1_555 O ? H HOH . ? A HOH 2019 ? 1_555 91.8 ? 2 OE2 ? A GLU 13 ? A GLU 14 ? 1_555 MG ? C MG . ? A MG 1062 ? 1_555 O ? H HOH . ? A HOH 2022 ? 1_555 91.6 ? 3 O ? H HOH . ? A HOH 2019 ? 1_555 MG ? C MG . ? A MG 1062 ? 1_555 O ? H HOH . ? A HOH 2022 ? 1_555 93.9 ? 4 OE2 ? A GLU 13 ? A GLU 14 ? 1_555 MG ? C MG . ? A MG 1062 ? 1_555 O ? H HOH . ? A HOH 2023 ? 1_555 83.3 ? 5 O ? H HOH . ? A HOH 2019 ? 1_555 MG ? C MG . ? A MG 1062 ? 1_555 O ? H HOH . ? A HOH 2023 ? 1_555 174.9 ? 6 O ? H HOH . ? A HOH 2022 ? 1_555 MG ? C MG . ? A MG 1062 ? 1_555 O ? H HOH . ? A HOH 2023 ? 1_555 87.5 ? 7 OE2 ? A GLU 13 ? A GLU 14 ? 1_555 MG ? C MG . ? A MG 1062 ? 1_555 O ? H HOH . ? A HOH 2027 ? 24_555 88.7 ? 8 O ? H HOH . ? A HOH 2019 ? 1_555 MG ? C MG . ? A MG 1062 ? 1_555 O ? H HOH . ? A HOH 2027 ? 24_555 86.4 ? 9 O ? H HOH . ? A HOH 2022 ? 1_555 MG ? C MG . ? A MG 1062 ? 1_555 O ? H HOH . ? A HOH 2027 ? 24_555 179.6 ? 10 O ? H HOH . ? A HOH 2023 ? 1_555 MG ? C MG . ? A MG 1062 ? 1_555 O ? H HOH . ? A HOH 2027 ? 24_555 92.3 ? 11 OE2 ? A GLU 13 ? A GLU 14 ? 1_555 MG ? C MG . ? A MG 1062 ? 1_555 O ? H HOH . ? A HOH 2036 ? 24_555 175.6 ? 12 O ? H HOH . ? A HOH 2019 ? 1_555 MG ? C MG . ? A MG 1062 ? 1_555 O ? H HOH . ? A HOH 2036 ? 24_555 90.6 ? 13 O ? H HOH . ? A HOH 2022 ? 1_555 MG ? C MG . ? A MG 1062 ? 1_555 O ? H HOH . ? A HOH 2036 ? 24_555 84.6 ? 14 O ? H HOH . ? A HOH 2023 ? 1_555 MG ? C MG . ? A MG 1062 ? 1_555 O ? H HOH . ? A HOH 2036 ? 24_555 94.3 ? 15 O ? H HOH . ? A HOH 2027 ? 24_555 MG ? C MG . ? A MG 1062 ? 1_555 O ? H HOH . ? A HOH 2036 ? 24_555 95.2 ? 16 OD2 ? A ASP 40 ? A ASP 41 ? 80_555 MG ? B MG . ? A MG 1061 ? 1_555 O ? H HOH . ? A HOH 2053 ? 1_555 82.6 ? 17 OD2 ? A ASP 40 ? A ASP 41 ? 80_555 MG ? B MG . ? A MG 1061 ? 1_555 O ? H HOH . ? A HOH 2054 ? 1_555 167.7 ? 18 O ? H HOH . ? A HOH 2053 ? 1_555 MG ? B MG . ? A MG 1061 ? 1_555 O ? H HOH . ? A HOH 2054 ? 1_555 94.5 ? 19 OD2 ? A ASP 40 ? A ASP 41 ? 80_555 MG ? B MG . ? A MG 1061 ? 1_555 O ? H HOH . ? A HOH 2058 ? 80_555 81.9 ? 20 O ? H HOH . ? A HOH 2053 ? 1_555 MG ? B MG . ? A MG 1061 ? 1_555 O ? H HOH . ? A HOH 2058 ? 80_555 94.8 ? 21 O ? H HOH . ? A HOH 2054 ? 1_555 MG ? B MG . ? A MG 1061 ? 1_555 O ? H HOH . ? A HOH 2058 ? 80_555 86.5 ? 22 OD2 ? A ASP 40 ? A ASP 41 ? 80_555 MG ? B MG . ? A MG 1061 ? 1_555 O ? H HOH . ? A HOH 2059 ? 80_555 93.3 ? 23 O ? H HOH . ? A HOH 2053 ? 1_555 MG ? B MG . ? A MG 1061 ? 1_555 O ? H HOH . ? A HOH 2059 ? 80_555 175.6 ? 24 O ? H HOH . ? A HOH 2054 ? 1_555 MG ? B MG . ? A MG 1061 ? 1_555 O ? H HOH . ? A HOH 2059 ? 80_555 89.8 ? 25 O ? H HOH . ? A HOH 2058 ? 80_555 MG ? B MG . ? A MG 1061 ? 1_555 O ? H HOH . ? A HOH 2059 ? 80_555 86.0 ? 26 OD2 ? A ASP 40 ? A ASP 41 ? 80_555 MG ? B MG . ? A MG 1061 ? 1_555 O ? H HOH . ? A HOH 2076 ? 80_555 95.6 ? 27 O ? H HOH . ? A HOH 2053 ? 1_555 MG ? B MG . ? A MG 1061 ? 1_555 O ? H HOH . ? A HOH 2076 ? 80_555 95.4 ? 28 O ? H HOH . ? A HOH 2054 ? 1_555 MG ? B MG . ? A MG 1061 ? 1_555 O ? H HOH . ? A HOH 2076 ? 80_555 96.5 ? 29 O ? H HOH . ? A HOH 2058 ? 80_555 MG ? B MG . ? A MG 1061 ? 1_555 O ? H HOH . ? A HOH 2076 ? 80_555 169.2 ? 30 O ? H HOH . ? A HOH 2059 ? 80_555 MG ? B MG . ? A MG 1061 ? 1_555 O ? H HOH . ? A HOH 2076 ? 80_555 83.7 ? 31 O ? H HOH . ? A HOH 2004 ? 80_555 NA ? D NA . ? A NA 1063 ? 1_555 O ? H HOH . ? A HOH 2004 ? 59_555 0.1 ? 32 O ? H HOH . ? A HOH 2004 ? 80_555 NA ? D NA . ? A NA 1063 ? 1_555 O ? H HOH . ? A HOH 2004 ? 1_555 0.1 ? 33 O ? H HOH . ? A HOH 2004 ? 59_555 NA ? D NA . ? A NA 1063 ? 1_555 O ? H HOH . ? A HOH 2004 ? 1_555 0.1 ? 34 O ? H HOH . ? A HOH 2004 ? 80_555 NA ? D NA . ? A NA 1063 ? 1_555 O ? H HOH . ? A HOH 2079 ? 1_555 84.7 ? 35 O ? H HOH . ? A HOH 2004 ? 59_555 NA ? D NA . ? A NA 1063 ? 1_555 O ? H HOH . ? A HOH 2079 ? 1_555 84.8 ? 36 O ? H HOH . ? A HOH 2004 ? 1_555 NA ? D NA . ? A NA 1063 ? 1_555 O ? H HOH . ? A HOH 2079 ? 1_555 84.7 ? 37 O ? H HOH . ? A HOH 2004 ? 80_555 NA ? D NA . ? A NA 1063 ? 1_555 O ? H HOH . ? A HOH 2079 ? 80_555 84.7 ? 38 O ? H HOH . ? A HOH 2004 ? 59_555 NA ? D NA . ? A NA 1063 ? 1_555 O ? H HOH . ? A HOH 2079 ? 80_555 84.7 ? 39 O ? H HOH . ? A HOH 2004 ? 1_555 NA ? D NA . ? A NA 1063 ? 1_555 O ? H HOH . ? A HOH 2079 ? 80_555 84.8 ? 40 O ? H HOH . ? A HOH 2079 ? 1_555 NA ? D NA . ? A NA 1063 ? 1_555 O ? H HOH . ? A HOH 2079 ? 80_555 119.2 ? 41 O ? H HOH . ? A HOH 2004 ? 80_555 NA ? D NA . ? A NA 1063 ? 1_555 O ? H HOH . ? A HOH 2079 ? 59_555 84.8 ? 42 O ? H HOH . ? A HOH 2004 ? 59_555 NA ? D NA . ? A NA 1063 ? 1_555 O ? H HOH . ? A HOH 2079 ? 59_555 84.7 ? 43 O ? H HOH . ? A HOH 2004 ? 1_555 NA ? D NA . ? A NA 1063 ? 1_555 O ? H HOH . ? A HOH 2079 ? 59_555 84.7 ? 44 O ? H HOH . ? A HOH 2079 ? 1_555 NA ? D NA . ? A NA 1063 ? 1_555 O ? H HOH . ? A HOH 2079 ? 59_555 119.2 ? 45 O ? H HOH . ? A HOH 2079 ? 80_555 NA ? D NA . ? A NA 1063 ? 1_555 O ? H HOH . ? A HOH 2079 ? 59_555 119.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-30 2 'Structure model' 1 1 2012-06-06 3 'Structure model' 1 2 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Non-polymer description' 4 2 'Structure model' Other 5 2 'Structure model' 'Version format compliance' 6 3 'Structure model' 'Data collection' 7 3 'Structure model' 'Database references' 8 3 'Structure model' 'Derived calculations' 9 3 'Structure model' Other 10 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' pdbx_struct_special_symmetry 8 3 'Structure model' struct_conn 9 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_sf' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 20 3 'Structure model' '_pdbx_struct_conn_angle.value' 21 3 'Structure model' '_struct_conn.pdbx_dist_value' 22 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 3 'Structure model' '_struct_conn.ptnr1_symmetry' 29 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 35 3 'Structure model' '_struct_conn.ptnr2_symmetry' 36 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 # _pdbx_entry_details.entry_id 2VKF _pdbx_entry_details.compound_details 'ENGINEERED RESIDUE IN CHAIN A, GLU 54 TO ALA' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;COFC2_O5 (CF2): NEW LIGAND, GUANOSIN ATTACHED VIA AN ALIPHATIC LINKER TO ISOALLOXAZINE ; _pdbx_entry_details.sequence_details 'MUTATION OF E45A AND DELETION OF GLU50,GLU51(UNP GLU59, GLU60)' _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 2028 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 2072 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_555 _pdbx_validate_symm_contact.dist 2.12 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CF2 O6A O N N 74 CF2 C6A C N N 75 CF2 N1A N N N 76 CF2 C2A C N N 77 CF2 N2A N N N 78 CF2 N3A N N N 79 CF2 C5AA C Y N 80 CF2 C4AA C Y N 81 CF2 N7A N Y N 82 CF2 C8A C Y N 83 CF2 N9A N Y N 84 CF2 "C1'A" C N R 85 CF2 "C2'A" C N N 86 CF2 "C3'A" C N S 87 CF2 "O3'A" O N N 88 CF2 "O4'A" O N N 89 CF2 "C4'A" C N R 90 CF2 "C5'A" C N N 91 CF2 "O1'" O N N 92 CF2 "C5'" C N N 93 CF2 "O2'" O N N 94 CF2 "N1'" N N N 95 CF2 "C4'" C N N 96 CF2 "C1'" C N N 97 CF2 N10 N N N 98 CF2 C9A C Y N 99 CF2 C5A C Y N 100 CF2 C6 C Y N 101 CF2 C7 C Y N 102 CF2 C7M C N N 103 CF2 C8 C Y N 104 CF2 C8M C N N 105 CF2 C9 C Y N 106 CF2 N5 N N N 107 CF2 C4A C N N 108 CF2 C4 C N N 109 CF2 O4 O N N 110 CF2 N3 N N N 111 CF2 C10 C N N 112 CF2 N1 N N N 113 CF2 C2 C N N 114 CF2 O2 O N N 115 CF2 "HA'" H N N 116 CF2 "HA'1" H N N 117 CF2 "HA'2" H N N 118 CF2 HAA H N N 119 CF2 HAB H N N 120 CF2 HAA1 H N N 121 CF2 HAA2 H N N 122 CF2 HAC H N N 123 CF2 HAD H N N 124 CF2 HAE H N N 125 CF2 HAB1 H N N 126 CF2 HAB2 H N N 127 CF2 "H1'" H N N 128 CF2 "H4'1" H N N 129 CF2 "H4'2" H N N 130 CF2 "H1'1" H N N 131 CF2 "H1'2" H N N 132 CF2 H9 H N N 133 CF2 H6 H N N 134 CF2 H7M1 H N N 135 CF2 H7M2 H N N 136 CF2 H7M3 H N N 137 CF2 H8M1 H N N 138 CF2 H8M2 H N N 139 CF2 H8M3 H N N 140 CF2 H3 H N N 141 CL CL CL N N 142 GLN N N N N 143 GLN CA C N S 144 GLN C C N N 145 GLN O O N N 146 GLN CB C N N 147 GLN CG C N N 148 GLN CD C N N 149 GLN OE1 O N N 150 GLN NE2 N N N 151 GLN OXT O N N 152 GLN H H N N 153 GLN H2 H N N 154 GLN HA H N N 155 GLN HB2 H N N 156 GLN HB3 H N N 157 GLN HG2 H N N 158 GLN HG3 H N N 159 GLN HE21 H N N 160 GLN HE22 H N N 161 GLN HXT H N N 162 GLU N N N N 163 GLU CA C N S 164 GLU C C N N 165 GLU O O N N 166 GLU CB C N N 167 GLU CG C N N 168 GLU CD C N N 169 GLU OE1 O N N 170 GLU OE2 O N N 171 GLU OXT O N N 172 GLU H H N N 173 GLU H2 H N N 174 GLU HA H N N 175 GLU HB2 H N N 176 GLU HB3 H N N 177 GLU HG2 H N N 178 GLU HG3 H N N 179 GLU HE2 H N N 180 GLU HXT H N N 181 GLY N N N N 182 GLY CA C N N 183 GLY C C N N 184 GLY O O N N 185 GLY OXT O N N 186 GLY H H N N 187 GLY H2 H N N 188 GLY HA2 H N N 189 GLY HA3 H N N 190 GLY HXT H N N 191 HOH O O N N 192 HOH H1 H N N 193 HOH H2 H N N 194 ILE N N N N 195 ILE CA C N S 196 ILE C C N N 197 ILE O O N N 198 ILE CB C N S 199 ILE CG1 C N N 200 ILE CG2 C N N 201 ILE CD1 C N N 202 ILE OXT O N N 203 ILE H H N N 204 ILE H2 H N N 205 ILE HA H N N 206 ILE HB H N N 207 ILE HG12 H N N 208 ILE HG13 H N N 209 ILE HG21 H N N 210 ILE HG22 H N N 211 ILE HG23 H N N 212 ILE HD11 H N N 213 ILE HD12 H N N 214 ILE HD13 H N N 215 ILE HXT H N N 216 LEU N N N N 217 LEU CA C N S 218 LEU C C N N 219 LEU O O N N 220 LEU CB C N N 221 LEU CG C N N 222 LEU CD1 C N N 223 LEU CD2 C N N 224 LEU OXT O N N 225 LEU H H N N 226 LEU H2 H N N 227 LEU HA H N N 228 LEU HB2 H N N 229 LEU HB3 H N N 230 LEU HG H N N 231 LEU HD11 H N N 232 LEU HD12 H N N 233 LEU HD13 H N N 234 LEU HD21 H N N 235 LEU HD22 H N N 236 LEU HD23 H N N 237 LEU HXT H N N 238 LYS N N N N 239 LYS CA C N S 240 LYS C C N N 241 LYS O O N N 242 LYS CB C N N 243 LYS CG C N N 244 LYS CD C N N 245 LYS CE C N N 246 LYS NZ N N N 247 LYS OXT O N N 248 LYS H H N N 249 LYS H2 H N N 250 LYS HA H N N 251 LYS HB2 H N N 252 LYS HB3 H N N 253 LYS HG2 H N N 254 LYS HG3 H N N 255 LYS HD2 H N N 256 LYS HD3 H N N 257 LYS HE2 H N N 258 LYS HE3 H N N 259 LYS HZ1 H N N 260 LYS HZ2 H N N 261 LYS HZ3 H N N 262 LYS HXT H N N 263 MG MG MG N N 264 NA NA NA N N 265 PHE N N N N 266 PHE CA C N S 267 PHE C C N N 268 PHE O O N N 269 PHE CB C N N 270 PHE CG C Y N 271 PHE CD1 C Y N 272 PHE CD2 C Y N 273 PHE CE1 C Y N 274 PHE CE2 C Y N 275 PHE CZ C Y N 276 PHE OXT O N N 277 PHE H H N N 278 PHE H2 H N N 279 PHE HA H N N 280 PHE HB2 H N N 281 PHE HB3 H N N 282 PHE HD1 H N N 283 PHE HD2 H N N 284 PHE HE1 H N N 285 PHE HE2 H N N 286 PHE HZ H N N 287 PHE HXT H N N 288 SER N N N N 289 SER CA C N S 290 SER C C N N 291 SER O O N N 292 SER CB C N N 293 SER OG O N N 294 SER OXT O N N 295 SER H H N N 296 SER H2 H N N 297 SER HA H N N 298 SER HB2 H N N 299 SER HB3 H N N 300 SER HG H N N 301 SER HXT H N N 302 SO4 S S N N 303 SO4 O1 O N N 304 SO4 O2 O N N 305 SO4 O3 O N N 306 SO4 O4 O N N 307 THR N N N N 308 THR CA C N S 309 THR C C N N 310 THR O O N N 311 THR CB C N R 312 THR OG1 O N N 313 THR CG2 C N N 314 THR OXT O N N 315 THR H H N N 316 THR H2 H N N 317 THR HA H N N 318 THR HB H N N 319 THR HG1 H N N 320 THR HG21 H N N 321 THR HG22 H N N 322 THR HG23 H N N 323 THR HXT H N N 324 TRP N N N N 325 TRP CA C N S 326 TRP C C N N 327 TRP O O N N 328 TRP CB C N N 329 TRP CG C Y N 330 TRP CD1 C Y N 331 TRP CD2 C Y N 332 TRP NE1 N Y N 333 TRP CE2 C Y N 334 TRP CE3 C Y N 335 TRP CZ2 C Y N 336 TRP CZ3 C Y N 337 TRP CH2 C Y N 338 TRP OXT O N N 339 TRP H H N N 340 TRP H2 H N N 341 TRP HA H N N 342 TRP HB2 H N N 343 TRP HB3 H N N 344 TRP HD1 H N N 345 TRP HE1 H N N 346 TRP HE3 H N N 347 TRP HZ2 H N N 348 TRP HZ3 H N N 349 TRP HH2 H N N 350 TRP HXT H N N 351 TYR N N N N 352 TYR CA C N S 353 TYR C C N N 354 TYR O O N N 355 TYR CB C N N 356 TYR CG C Y N 357 TYR CD1 C Y N 358 TYR CD2 C Y N 359 TYR CE1 C Y N 360 TYR CE2 C Y N 361 TYR CZ C Y N 362 TYR OH O N N 363 TYR OXT O N N 364 TYR H H N N 365 TYR H2 H N N 366 TYR HA H N N 367 TYR HB2 H N N 368 TYR HB3 H N N 369 TYR HD1 H N N 370 TYR HD2 H N N 371 TYR HE1 H N N 372 TYR HE2 H N N 373 TYR HH H N N 374 TYR HXT H N N 375 VAL N N N N 376 VAL CA C N S 377 VAL C C N N 378 VAL O O N N 379 VAL CB C N N 380 VAL CG1 C N N 381 VAL CG2 C N N 382 VAL OXT O N N 383 VAL H H N N 384 VAL H2 H N N 385 VAL HA H N N 386 VAL HB H N N 387 VAL HG11 H N N 388 VAL HG12 H N N 389 VAL HG13 H N N 390 VAL HG21 H N N 391 VAL HG22 H N N 392 VAL HG23 H N N 393 VAL HXT H N N 394 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CF2 O6A C6A doub N N 70 CF2 C6A N1A sing N N 71 CF2 C6A C5AA sing N N 72 CF2 N1A C2A sing N N 73 CF2 C2A N2A sing N N 74 CF2 C2A N3A doub N N 75 CF2 N3A C4AA sing N N 76 CF2 C5AA C4AA doub Y N 77 CF2 C5AA N7A sing Y N 78 CF2 C4AA N9A sing Y N 79 CF2 N7A C8A doub Y N 80 CF2 C8A N9A sing Y N 81 CF2 N9A "C1'A" sing N N 82 CF2 "C1'A" "C2'A" sing N N 83 CF2 "C1'A" "O4'A" sing N N 84 CF2 "C2'A" "C3'A" sing N N 85 CF2 "C3'A" "O3'A" sing N N 86 CF2 "C3'A" "C4'A" sing N N 87 CF2 "O4'A" "C4'A" sing N N 88 CF2 "C4'A" "C5'A" sing N N 89 CF2 "C5'A" "O1'" sing N N 90 CF2 "O1'" "C5'" sing N N 91 CF2 "C5'" "O2'" doub N N 92 CF2 "C5'" "N1'" sing N N 93 CF2 "N1'" "C4'" sing N N 94 CF2 "C4'" "C1'" sing N N 95 CF2 "C1'" N10 sing N N 96 CF2 N10 C9A sing N N 97 CF2 N10 C10 sing N N 98 CF2 C9A C5A sing Y N 99 CF2 C9A C9 doub Y N 100 CF2 C5A C6 doub Y N 101 CF2 C5A N5 sing N N 102 CF2 C6 C7 sing Y N 103 CF2 C7 C7M sing N N 104 CF2 C7 C8 doub Y N 105 CF2 C8 C8M sing N N 106 CF2 C8 C9 sing Y N 107 CF2 N5 C4A doub N N 108 CF2 C4A C4 sing N N 109 CF2 C4A C10 sing N N 110 CF2 C4 O4 doub N N 111 CF2 C4 N3 sing N N 112 CF2 N3 C2 sing N N 113 CF2 C10 N1 doub N N 114 CF2 N1 C2 sing N N 115 CF2 C2 O2 doub N N 116 CF2 N1A "HA'" sing N N 117 CF2 N2A "HA'1" sing N N 118 CF2 N2A "HA'2" sing N N 119 CF2 C8A HAA sing N N 120 CF2 "C1'A" HAB sing N N 121 CF2 "C2'A" HAA1 sing N N 122 CF2 "C2'A" HAA2 sing N N 123 CF2 "C3'A" HAC sing N N 124 CF2 "O3'A" HAD sing N N 125 CF2 "C4'A" HAE sing N N 126 CF2 "C5'A" HAB1 sing N N 127 CF2 "C5'A" HAB2 sing N N 128 CF2 "N1'" "H1'" sing N N 129 CF2 "C4'" "H4'1" sing N N 130 CF2 "C4'" "H4'2" sing N N 131 CF2 "C1'" "H1'1" sing N N 132 CF2 "C1'" "H1'2" sing N N 133 CF2 C9 H9 sing N N 134 CF2 C6 H6 sing N N 135 CF2 C7M H7M1 sing N N 136 CF2 C7M H7M2 sing N N 137 CF2 C7M H7M3 sing N N 138 CF2 C8M H8M1 sing N N 139 CF2 C8M H8M2 sing N N 140 CF2 C8M H8M3 sing N N 141 CF2 N3 H3 sing N N 142 GLN N CA sing N N 143 GLN N H sing N N 144 GLN N H2 sing N N 145 GLN CA C sing N N 146 GLN CA CB sing N N 147 GLN CA HA sing N N 148 GLN C O doub N N 149 GLN C OXT sing N N 150 GLN CB CG sing N N 151 GLN CB HB2 sing N N 152 GLN CB HB3 sing N N 153 GLN CG CD sing N N 154 GLN CG HG2 sing N N 155 GLN CG HG3 sing N N 156 GLN CD OE1 doub N N 157 GLN CD NE2 sing N N 158 GLN NE2 HE21 sing N N 159 GLN NE2 HE22 sing N N 160 GLN OXT HXT sing N N 161 GLU N CA sing N N 162 GLU N H sing N N 163 GLU N H2 sing N N 164 GLU CA C sing N N 165 GLU CA CB sing N N 166 GLU CA HA sing N N 167 GLU C O doub N N 168 GLU C OXT sing N N 169 GLU CB CG sing N N 170 GLU CB HB2 sing N N 171 GLU CB HB3 sing N N 172 GLU CG CD sing N N 173 GLU CG HG2 sing N N 174 GLU CG HG3 sing N N 175 GLU CD OE1 doub N N 176 GLU CD OE2 sing N N 177 GLU OE2 HE2 sing N N 178 GLU OXT HXT sing N N 179 GLY N CA sing N N 180 GLY N H sing N N 181 GLY N H2 sing N N 182 GLY CA C sing N N 183 GLY CA HA2 sing N N 184 GLY CA HA3 sing N N 185 GLY C O doub N N 186 GLY C OXT sing N N 187 GLY OXT HXT sing N N 188 HOH O H1 sing N N 189 HOH O H2 sing N N 190 ILE N CA sing N N 191 ILE N H sing N N 192 ILE N H2 sing N N 193 ILE CA C sing N N 194 ILE CA CB sing N N 195 ILE CA HA sing N N 196 ILE C O doub N N 197 ILE C OXT sing N N 198 ILE CB CG1 sing N N 199 ILE CB CG2 sing N N 200 ILE CB HB sing N N 201 ILE CG1 CD1 sing N N 202 ILE CG1 HG12 sing N N 203 ILE CG1 HG13 sing N N 204 ILE CG2 HG21 sing N N 205 ILE CG2 HG22 sing N N 206 ILE CG2 HG23 sing N N 207 ILE CD1 HD11 sing N N 208 ILE CD1 HD12 sing N N 209 ILE CD1 HD13 sing N N 210 ILE OXT HXT sing N N 211 LEU N CA sing N N 212 LEU N H sing N N 213 LEU N H2 sing N N 214 LEU CA C sing N N 215 LEU CA CB sing N N 216 LEU CA HA sing N N 217 LEU C O doub N N 218 LEU C OXT sing N N 219 LEU CB CG sing N N 220 LEU CB HB2 sing N N 221 LEU CB HB3 sing N N 222 LEU CG CD1 sing N N 223 LEU CG CD2 sing N N 224 LEU CG HG sing N N 225 LEU CD1 HD11 sing N N 226 LEU CD1 HD12 sing N N 227 LEU CD1 HD13 sing N N 228 LEU CD2 HD21 sing N N 229 LEU CD2 HD22 sing N N 230 LEU CD2 HD23 sing N N 231 LEU OXT HXT sing N N 232 LYS N CA sing N N 233 LYS N H sing N N 234 LYS N H2 sing N N 235 LYS CA C sing N N 236 LYS CA CB sing N N 237 LYS CA HA sing N N 238 LYS C O doub N N 239 LYS C OXT sing N N 240 LYS CB CG sing N N 241 LYS CB HB2 sing N N 242 LYS CB HB3 sing N N 243 LYS CG CD sing N N 244 LYS CG HG2 sing N N 245 LYS CG HG3 sing N N 246 LYS CD CE sing N N 247 LYS CD HD2 sing N N 248 LYS CD HD3 sing N N 249 LYS CE NZ sing N N 250 LYS CE HE2 sing N N 251 LYS CE HE3 sing N N 252 LYS NZ HZ1 sing N N 253 LYS NZ HZ2 sing N N 254 LYS NZ HZ3 sing N N 255 LYS OXT HXT sing N N 256 PHE N CA sing N N 257 PHE N H sing N N 258 PHE N H2 sing N N 259 PHE CA C sing N N 260 PHE CA CB sing N N 261 PHE CA HA sing N N 262 PHE C O doub N N 263 PHE C OXT sing N N 264 PHE CB CG sing N N 265 PHE CB HB2 sing N N 266 PHE CB HB3 sing N N 267 PHE CG CD1 doub Y N 268 PHE CG CD2 sing Y N 269 PHE CD1 CE1 sing Y N 270 PHE CD1 HD1 sing N N 271 PHE CD2 CE2 doub Y N 272 PHE CD2 HD2 sing N N 273 PHE CE1 CZ doub Y N 274 PHE CE1 HE1 sing N N 275 PHE CE2 CZ sing Y N 276 PHE CE2 HE2 sing N N 277 PHE CZ HZ sing N N 278 PHE OXT HXT sing N N 279 SER N CA sing N N 280 SER N H sing N N 281 SER N H2 sing N N 282 SER CA C sing N N 283 SER CA CB sing N N 284 SER CA HA sing N N 285 SER C O doub N N 286 SER C OXT sing N N 287 SER CB OG sing N N 288 SER CB HB2 sing N N 289 SER CB HB3 sing N N 290 SER OG HG sing N N 291 SER OXT HXT sing N N 292 SO4 S O1 doub N N 293 SO4 S O2 doub N N 294 SO4 S O3 sing N N 295 SO4 S O4 sing N N 296 THR N CA sing N N 297 THR N H sing N N 298 THR N H2 sing N N 299 THR CA C sing N N 300 THR CA CB sing N N 301 THR CA HA sing N N 302 THR C O doub N N 303 THR C OXT sing N N 304 THR CB OG1 sing N N 305 THR CB CG2 sing N N 306 THR CB HB sing N N 307 THR OG1 HG1 sing N N 308 THR CG2 HG21 sing N N 309 THR CG2 HG22 sing N N 310 THR CG2 HG23 sing N N 311 THR OXT HXT sing N N 312 TRP N CA sing N N 313 TRP N H sing N N 314 TRP N H2 sing N N 315 TRP CA C sing N N 316 TRP CA CB sing N N 317 TRP CA HA sing N N 318 TRP C O doub N N 319 TRP C OXT sing N N 320 TRP CB CG sing N N 321 TRP CB HB2 sing N N 322 TRP CB HB3 sing N N 323 TRP CG CD1 doub Y N 324 TRP CG CD2 sing Y N 325 TRP CD1 NE1 sing Y N 326 TRP CD1 HD1 sing N N 327 TRP CD2 CE2 doub Y N 328 TRP CD2 CE3 sing Y N 329 TRP NE1 CE2 sing Y N 330 TRP NE1 HE1 sing N N 331 TRP CE2 CZ2 sing Y N 332 TRP CE3 CZ3 doub Y N 333 TRP CE3 HE3 sing N N 334 TRP CZ2 CH2 doub Y N 335 TRP CZ2 HZ2 sing N N 336 TRP CZ3 CH2 sing Y N 337 TRP CZ3 HZ3 sing N N 338 TRP CH2 HH2 sing N N 339 TRP OXT HXT sing N N 340 TYR N CA sing N N 341 TYR N H sing N N 342 TYR N H2 sing N N 343 TYR CA C sing N N 344 TYR CA CB sing N N 345 TYR CA HA sing N N 346 TYR C O doub N N 347 TYR C OXT sing N N 348 TYR CB CG sing N N 349 TYR CB HB2 sing N N 350 TYR CB HB3 sing N N 351 TYR CG CD1 doub Y N 352 TYR CG CD2 sing Y N 353 TYR CD1 CE1 sing Y N 354 TYR CD1 HD1 sing N N 355 TYR CD2 CE2 doub Y N 356 TYR CD2 HD2 sing N N 357 TYR CE1 CZ doub Y N 358 TYR CE1 HE1 sing N N 359 TYR CE2 CZ sing Y N 360 TYR CE2 HE2 sing N N 361 TYR CZ OH sing N N 362 TYR OH HH sing N N 363 TYR OXT HXT sing N N 364 VAL N CA sing N N 365 VAL N H sing N N 366 VAL N H2 sing N N 367 VAL CA C sing N N 368 VAL CA CB sing N N 369 VAL CA HA sing N N 370 VAL C O doub N N 371 VAL C OXT sing N N 372 VAL CB CG1 sing N N 373 VAL CB CG2 sing N N 374 VAL CB HB sing N N 375 VAL CG1 HG11 sing N N 376 VAL CG1 HG12 sing N N 377 VAL CG1 HG13 sing N N 378 VAL CG2 HG21 sing N N 379 VAL CG2 HG22 sing N N 380 VAL CG2 HG23 sing N N 381 VAL OXT HXT sing N N 382 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'SODIUM ION' NA 4 'CHLORIDE ION' CL 5 'SULFATE ION' SO4 6 "2'-deoxy-5'-O-{[2-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)ethyl]carbamoyl}guanosine" CF2 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2CCC _pdbx_initial_refinement_model.details 'PDB ENTRY 2CCC' #