HEADER MEMBRANE PROTEIN 20-DEC-07 2VKN TITLE YEAST SHO1 SH3 DOMAIN COMPLEXED WITH A PEPTIDE FROM PBS2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN SSU81; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN, RESIDUES 298-367; COMPND 5 SYNONYM: SHO1 OSMOSENSOR, SHO1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MAP KINASE KINASE PBS2; COMPND 9 CHAIN: C; COMPND 10 FRAGMENT: PROLINE-RICH DOMAIN, RESIDUES 2-13; COMPND 11 SYNONYM: POLYMYXIN B RESISTANCE PROTEIN 2, SUPPRESSOR OF FLUORIDE COMPND 12 SENSITIVITY 4, PBS2; COMPND 13 EC: 2.7.12.2; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 4932 KEYWDS MEMBRANE, SH3 DOMAIN, S. CEREVISIAE, TRANSMEMBRANE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.KURSULA,I.KURSULA,Y.H.SONG,K.PARASKEVOPOULOS,M.WILMANNS REVDAT 5 13-DEC-23 2VKN 1 REMARK REVDAT 4 30-JAN-19 2VKN 1 REMARK REVDAT 3 13-JUL-11 2VKN 1 VERSN REVDAT 2 24-FEB-09 2VKN 1 VERSN REVDAT 1 05-FEB-08 2VKN 0 SPRSDE 05-FEB-08 2VKN 2QK6 JRNL AUTH P.KURSULA,I.KURSULA,N.PINOTSIS,Y.H.SONG,F.LEHMANN,P.ZOU, JRNL AUTH 2 M.WILMANNS JRNL TITL STRUCTURAL GENOMICS OF YEAST SH3 DOMAINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 5233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 243 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 377 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 15 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 605 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 37 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.85000 REMARK 3 B22 (A**2) : 0.85000 REMARK 3 B33 (A**2) : -1.27000 REMARK 3 B12 (A**2) : 0.42000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.177 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.906 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 642 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 434 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 877 ; 1.444 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1058 ; 0.928 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 75 ; 6.575 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 34 ;43.012 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 100 ;18.186 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;18.028 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 88 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 703 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 123 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 103 ; 0.167 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 432 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 288 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 354 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 24 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.138 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 22 ; 0.167 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.118 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 483 ; 1.368 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 611 ; 1.986 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 317 ; 3.389 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 265 ; 4.746 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 8 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2820 -27.9670 3.7570 REMARK 3 T TENSOR REMARK 3 T11: .0604 T22: .0533 REMARK 3 T33: .1139 T12: -.0498 REMARK 3 T13: .0255 T23: .0356 REMARK 3 L TENSOR REMARK 3 L11: 18.8452 L22: 2.1752 REMARK 3 L33: 15.4722 L12: -6.2237 REMARK 3 L13: 4.4596 L23: -.1585 REMARK 3 S TENSOR REMARK 3 S11: -.5860 S12: .3048 S13: .8898 REMARK 3 S21: -.1795 S22: .3379 S23: -.2913 REMARK 3 S31: -.6801 S32: 1.3760 S33: .2481 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 14 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0790 -24.8010 1.2400 REMARK 3 T TENSOR REMARK 3 T11: -.1127 T22: .2486 REMARK 3 T33: .0281 T12: .0803 REMARK 3 T13: .0152 T23: -.0127 REMARK 3 L TENSOR REMARK 3 L11: 3.8367 L22: 35.0126 REMARK 3 L33: 8.2534 L12: 2.6600 REMARK 3 L13: -4.1958 L23: -2.2311 REMARK 3 S TENSOR REMARK 3 S11: .2480 S12: .0994 S13: -.2442 REMARK 3 S21: .3305 S22: -.4153 S23: 1.1334 REMARK 3 S31: -.3032 S32: -1.8094 S33: .1674 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 21 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2830 -9.7960 .7020 REMARK 3 T TENSOR REMARK 3 T11: .3971 T22: .3387 REMARK 3 T33: .3869 T12: .2425 REMARK 3 T13: -.0833 T23: .2622 REMARK 3 L TENSOR REMARK 3 L11: 28.4446 L22: 78.0838 REMARK 3 L33: 3.1937 L12: -8.8166 REMARK 3 L13: -2.3808 L23: 15.7589 REMARK 3 S TENSOR REMARK 3 S11: -2.6849 S12: -2.0347 S13: 3.0777 REMARK 3 S21: .0567 S22: .6391 S23: 4.4458 REMARK 3 S31: -1.0595 S32: .1000 S33: 2.0457 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 27 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3570 -21.7110 -2.1540 REMARK 3 T TENSOR REMARK 3 T11: .0320 T22: .2227 REMARK 3 T33: .0475 T12: .1493 REMARK 3 T13: .0494 T23: .0724 REMARK 3 L TENSOR REMARK 3 L11: 2.2957 L22: 30.5406 REMARK 3 L33: 6.5407 L12: 2.8565 REMARK 3 L13: 2.1780 L23: 5.2906 REMARK 3 S TENSOR REMARK 3 S11: .1529 S12: .2643 S13: -.1129 REMARK 3 S21: -.8643 S22: -.2965 S23: -.1339 REMARK 3 S31: -1.0693 S32: -1.5890 S33: .1436 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 34 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6970 -27.0960 -1.7280 REMARK 3 T TENSOR REMARK 3 T11: .0049 T22: .0973 REMARK 3 T33: .0926 T12: -.0192 REMARK 3 T13: .0626 T23: .0168 REMARK 3 L TENSOR REMARK 3 L11: 19.1471 L22: 7.7797 REMARK 3 L33: 14.3155 L12: 7.6766 REMARK 3 L13: 15.9252 L23: 7.1796 REMARK 3 S TENSOR REMARK 3 S11: .1434 S12: .6794 S13: -.3288 REMARK 3 S21: -.0735 S22: .1792 S23: -.2658 REMARK 3 S31: -.1909 S32: .1062 S33: -.3226 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2980 -20.2680 11.2970 REMARK 3 T TENSOR REMARK 3 T11: .1012 T22: .0627 REMARK 3 T33: .1032 T12: -.0206 REMARK 3 T13: -.0226 T23: -.0972 REMARK 3 L TENSOR REMARK 3 L11: 11.2342 L22: 12.0103 REMARK 3 L33: 17.7563 L12: -.6884 REMARK 3 L13: .2481 L23: -10.8404 REMARK 3 S TENSOR REMARK 3 S11: -.2775 S12: -.5029 S13: .7500 REMARK 3 S21: .6146 S22: .1958 S23: -.2131 REMARK 3 S31: -1.6498 S32: .7280 S33: .0817 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5990 -21.3650 .4720 REMARK 3 T TENSOR REMARK 3 T11: .0090 T22: -.0269 REMARK 3 T33: .1631 T12: -.0067 REMARK 3 T13: .0139 T23: .0322 REMARK 3 L TENSOR REMARK 3 L11: 5.2464 L22: 5.5932 REMARK 3 L33: 28.3563 L12: -.3074 REMARK 3 L13: .8770 L23: 2.3804 REMARK 3 S TENSOR REMARK 3 S11: .0979 S12: .1073 S13: -.0752 REMARK 3 S21: -.2577 S22: .0837 S23: -.4515 REMARK 3 S31: -1.4034 S32: .7122 S33: -.1816 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7360 -18.7300 -3.6770 REMARK 3 T TENSOR REMARK 3 T11: .0519 T22: .0639 REMARK 3 T33: .1086 T12: .0170 REMARK 3 T13: .0124 T23: .0793 REMARK 3 L TENSOR REMARK 3 L11: 1.2831 L22: 12.7704 REMARK 3 L33: 19.0456 L12: -1.4489 REMARK 3 L13: -3.5023 L23: 7.4956 REMARK 3 S TENSOR REMARK 3 S11: .2361 S12: .3694 S13: .2868 REMARK 3 S21: -.4115 S22: .1114 S23: .5869 REMARK 3 S31: -1.6518 S32: -.5906 S33: -.3475 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): 8.5010 -26.7970 6.1900 REMARK 3 T TENSOR REMARK 3 T11: -.0192 T22: .1129 REMARK 3 T33: .1395 T12: -.0108 REMARK 3 T13: .0439 T23: .0341 REMARK 3 L TENSOR REMARK 3 L11: 5.6184 L22: 6.9647 REMARK 3 L33: 10.3728 L12: -2.0476 REMARK 3 L13: -3.4424 L23: 8.4230 REMARK 3 S TENSOR REMARK 3 S11: -.0205 S12: -.5319 S13: .1352 REMARK 3 S21: .1964 S22: .3637 S23: -.0298 REMARK 3 S31: .1606 S32: -.6899 S33: -.3433 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3310 -31.8080 2.8740 REMARK 3 T TENSOR REMARK 3 T11: -.0276 T22: .1616 REMARK 3 T33: .0881 T12: .0221 REMARK 3 T13: .0952 T23: -.1510 REMARK 3 L TENSOR REMARK 3 L11: 28.8571 L22: 17.4457 REMARK 3 L33: 20.5735 L12: 8.8561 REMARK 3 L13: 12.9723 L23: -1.7357 REMARK 3 S TENSOR REMARK 3 S11: .1344 S12: 1.3243 S13: -1.1615 REMARK 3 S21: -.9229 S22: .2332 S23: -1.5468 REMARK 3 S31: .2026 S32: 2.0043 S33: -.3676 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 11 REMARK 3 ORIGIN FOR THE GROUP (A): 1.0386 -21.0616 8.9383 REMARK 3 T TENSOR REMARK 3 T11: -.2796 T22: .0815 REMARK 3 T33: -.0622 T12: .0968 REMARK 3 T13: .1133 T23: -.0122 REMARK 3 L TENSOR REMARK 3 L11: 35.7112 L22: 5.1887 REMARK 3 L33: 13.6099 L12: 12.2121 REMARK 3 L13: 15.2092 L23: 2.5137 REMARK 3 S TENSOR REMARK 3 S11: -.1011 S12: .5620 S13: .5652 REMARK 3 S21: .3541 S22: .3883 S23: .3938 REMARK 3 S31: -.2586 S32: -.0043 S33: -.2872 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VKN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1290034845. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.25 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5525 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2QK6 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.3M AMMONIUM SULPHATE, 0.1M TRIS-HCL, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.11333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 11.05667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 16.58500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 5.52833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.64167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 0 REMARK 465 MET A 67 REMARK 465 HIS A 68 REMARK 465 ARG A 69 REMARK 465 ASN C 2 REMARK 465 GLY C 12 REMARK 465 SER C 13 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 2 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU C 10 128.90 -37.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1067 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C1012 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C1013 DBREF 2VKN A 0 69 UNP P40073 SSU81_YEAST 298 367 DBREF 2VKN C 2 13 UNP P08018 PBS2_YEAST 92 103 SEQADV 2VKN LEU C 10 UNP P08018 VAL 100 CONFLICT SEQRES 1 A 70 ASP ASP ASN PHE ILE TYR LYS ALA LYS ALA LEU TYR PRO SEQRES 2 A 70 TYR ASP ALA ASP ASP ASP ASP ALA TYR GLU ILE SER PHE SEQRES 3 A 70 GLU GLN ASN GLU ILE LEU GLN VAL SER ASP ILE GLU GLY SEQRES 4 A 70 ARG TRP TRP LYS ALA ARG ARG ALA ASN GLY GLU THR GLY SEQRES 5 A 70 ILE ILE PRO SER ASN TYR VAL GLN LEU ILE ASP GLY PRO SEQRES 6 A 70 GLU GLU MET HIS ARG SEQRES 1 C 12 ASN LYS PRO LEU PRO PRO LEU PRO LEU ALA GLY SER HET SO4 A1067 5 HET SO4 C1012 5 HET SO4 C1013 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *37(H2 O) SHEET 1 AA 5 THR A 50 PRO A 54 0 SHEET 2 AA 5 TRP A 40 ARG A 44 -1 O TRP A 41 N ILE A 53 SHEET 3 AA 5 ILE A 30 SER A 34 -1 O GLN A 32 N ARG A 44 SHEET 4 AA 5 ILE A 4 ALA A 9 -1 O TYR A 5 N VAL A 33 SHEET 5 AA 5 VAL A 58 GLU A 65 -1 O GLN A 59 N LYS A 8 CISPEP 1 GLY A 63 PRO A 64 0 2.08 SITE 1 AC1 3 GLY A 38 ARG A 39 TRP A 40 SITE 1 AC2 3 ARG A 39 PRO C 4 LEU C 5 SITE 1 AC3 4 LYS A 42 PRO C 7 LEU C 8 HOH C2003 CRYST1 67.490 67.490 33.170 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014817 0.008555 0.000000 0.00000 SCALE2 0.000000 0.017109 0.000000 0.00000 SCALE3 0.000000 0.000000 0.030148 0.00000