HEADER TRANSFERASE 15-JAN-08 2VLI TITLE STRUCTURE OF DEINOCOCCUS RADIODURANS TUNICAMYCIN RESISTANCE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBIOTIC RESISTANCE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TUNICAMYCIN RESISTANCE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 243230; SOURCE 4 STRAIN: R1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PDEST17 KEYWDS TRANSFERASE, PHOSPHOTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MACEDO,U.KAPP,I.LEIROS,D.R.HALL,E.MITCHELL REVDAT 5 13-NOV-24 2VLI 1 REMARK LINK REVDAT 4 08-MAY-19 2VLI 1 REMARK LINK REVDAT 3 30-MAY-12 2VLI 1 KEYWDS JRNL REMARK VERSN REVDAT 3 2 1 FORMUL REVDAT 2 24-FEB-09 2VLI 1 VERSN REVDAT 1 17-JUN-08 2VLI 0 JRNL AUTH U.KAPP,S.MACEDO,D.R.HALL,I.LEIROS,S.M.MCSWEENEY,E.MITCHELL JRNL TITL STRUCTURE OF DEINOCOCCUS RADIODURANS TUNICAMYCIN-RESISTANCE JRNL TITL 2 PROTEIN (TMRD), A PHOSPHOTRANSFERASE. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 64 479 2008 JRNL REFN ESSN 1744-3091 JRNL PMID 18540055 JRNL DOI 10.1107/S1744309108011822 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 27186 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1486 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1987 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2620 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39000 REMARK 3 B22 (A**2) : -2.53000 REMARK 3 B33 (A**2) : 2.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.354 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2699 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1862 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3672 ; 1.580 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4524 ; 0.984 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 337 ; 5.319 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;31.162 ;22.960 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 442 ;14.279 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;18.081 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 413 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2999 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 536 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 554 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1930 ; 0.207 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1299 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1353 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 160 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.210 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 60 ; 0.287 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.195 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2020 ; 1.959 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2727 ; 1.933 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1088 ; 3.206 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 943 ; 4.821 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THE N-TERMINAL HIS-TAGS AND RESIDUES TO A4 AND B3 AND REMARK 3 FROM A176 AND B176 WERE NOT VISIBLE IN THE DENSITY MAPS. REMARK 3 RESIDUES A15-18 AND A126-129 WERE ALSO NOT VISIBLE. ALL THESE REMARK 3 RESIDUES WERE THEREFORE NOT INCLUDED IN THE STRUCTURE MODEL. REMARK 4 REMARK 4 2VLI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1290035020. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9144, 0.9792 REMARK 200 MONOCHROMATOR : SI DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : RH COATED TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28689 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 22.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.940 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.09 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: PHASING DATA WERE COLLECTED FROM A SECOND CRYSTAL. THE REMARK 200 INITIAL MODEL WAS THEN TRANSFERRED TO HIGHER RESOLUTION DATA SET REMARK 200 FROM ANOTHER CRYSTAL FOR REFINEMENT. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 DEGREESC AFTER 3-6 DAYS USING REMARK 280 HANGING DROPS CONTAINING 2 MICROL OF THE PROTEIN, 0.4-0.8 MICROL REMARK 280 0.1 M CDCL2 AND 1.6-1.2 MICROL OF A RESERVOIR SOLUTION REMARK 280 CONTAINING 11-13% PEG 4000, 0.8 M SODIUM FORMATE AND 0.1 M REMARK 280 SODIUM ACETATE PH 5.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.55500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.55500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.68000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.08000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.68000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.08000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.55500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.68000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.08000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.55500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.68000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.08000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 40.55500 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 40.55500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2052 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2125 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 PRO A 2 REMARK 465 MSE A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 15 REMARK 465 VAL A 16 REMARK 465 GLY A 17 REMARK 465 LYS A 18 REMARK 465 GLY A 126 REMARK 465 GLN A 127 REMARK 465 PRO A 128 REMARK 465 GLN A 129 REMARK 465 PRO A 177 REMARK 465 GLN A 178 REMARK 465 GLY A 179 REMARK 465 ALA A 180 REMARK 465 LEU A 181 REMARK 465 HIS A 182 REMARK 465 TRP A 183 REMARK 465 THR B 1 REMARK 465 PRO B 2 REMARK 465 MSE B 3 REMARK 465 PRO B 177 REMARK 465 GLN B 178 REMARK 465 GLY B 179 REMARK 465 ALA B 180 REMARK 465 LEU B 181 REMARK 465 HIS B 182 REMARK 465 TRP B 183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 123 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 CADMIUM ION (CD): FROM CRYSTALLISATION CONDITIONS REMARK 600 CHLORIDE ION (CL): FROM CRYSTALLISATION CONDITIONS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1177 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 145 OE2 REMARK 620 2 GLU A 145 OE1 49.7 REMARK 620 3 HIS A 150 ND1 89.0 91.3 REMARK 620 4 CL A1178 CL 144.6 94.9 93.2 REMARK 620 5 GLU B 145 OE2 129.1 178.8 88.8 86.3 REMARK 620 6 GLU B 145 OE1 79.6 129.2 89.0 135.8 49.5 REMARK 620 7 HIS B 150 ND1 82.0 82.9 170.9 94.2 96.9 89.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1177 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1178 REMARK 999 REMARK 999 SEQUENCE REMARK 999 PROTEIN WAS EXPRESSED USING A CONSTRUCT GIVING A PRODUCT REMARK 999 WITH A C-TERMINAL TRUNCATION FROM RESIDUE 184 FORWARDS. DBREF 2VLI A 1 183 UNP Q9RUG7 Q9RUG7_DEIRA 2 184 DBREF 2VLI B 1 183 UNP Q9RUG7 Q9RUG7_DEIRA 2 184 SEQRES 1 A 183 THR PRO MSE ARG SER PRO ILE ILE TRP ILE ASN GLY PRO SEQRES 2 A 183 PHE GLY VAL GLY LYS THR HIS THR ALA HIS THR LEU HIS SEQRES 3 A 183 GLU ARG LEU PRO GLY SER PHE VAL PHE GLU PRO GLU GLU SEQRES 4 A 183 MSE GLY GLN ALA LEU ARG LYS LEU THR PRO GLY PHE SER SEQRES 5 A 183 GLY ASP PRO GLN GLU HIS PRO MSE TRP ILE PRO LEU MSE SEQRES 6 A 183 LEU ASP ALA LEU GLN TYR ALA SER ARG GLU ALA ALA GLY SEQRES 7 A 183 PRO LEU ILE VAL PRO VAL SER ILE SER ASP THR ALA ARG SEQRES 8 A 183 HIS ARG ARG LEU MSE SER GLY LEU LYS ASP ARG GLY LEU SEQRES 9 A 183 SER VAL HIS HIS PHE THR LEU ILE ALA PRO LEU ASN VAL SEQRES 10 A 183 VAL LEU GLU ARG LEU ARG ARG ASP GLY GLN PRO GLN VAL SEQRES 11 A 183 ASN VAL GLY THR VAL GLU ASP ARG LEU ASN GLU LEU ARG SEQRES 12 A 183 GLY GLU GLN PHE GLN THR HIS ILE ASP THR ALA GLY LEU SEQRES 13 A 183 GLY THR GLN GLN VAL ALA GLU GLN ILE ALA ALA GLN VAL SEQRES 14 A 183 GLY LEU THR LEU ALA PRO PRO PRO GLN GLY ALA LEU HIS SEQRES 15 A 183 TRP SEQRES 1 B 183 THR PRO MSE ARG SER PRO ILE ILE TRP ILE ASN GLY PRO SEQRES 2 B 183 PHE GLY VAL GLY LYS THR HIS THR ALA HIS THR LEU HIS SEQRES 3 B 183 GLU ARG LEU PRO GLY SER PHE VAL PHE GLU PRO GLU GLU SEQRES 4 B 183 MSE GLY GLN ALA LEU ARG LYS LEU THR PRO GLY PHE SER SEQRES 5 B 183 GLY ASP PRO GLN GLU HIS PRO MSE TRP ILE PRO LEU MSE SEQRES 6 B 183 LEU ASP ALA LEU GLN TYR ALA SER ARG GLU ALA ALA GLY SEQRES 7 B 183 PRO LEU ILE VAL PRO VAL SER ILE SER ASP THR ALA ARG SEQRES 8 B 183 HIS ARG ARG LEU MSE SER GLY LEU LYS ASP ARG GLY LEU SEQRES 9 B 183 SER VAL HIS HIS PHE THR LEU ILE ALA PRO LEU ASN VAL SEQRES 10 B 183 VAL LEU GLU ARG LEU ARG ARG ASP GLY GLN PRO GLN VAL SEQRES 11 B 183 ASN VAL GLY THR VAL GLU ASP ARG LEU ASN GLU LEU ARG SEQRES 12 B 183 GLY GLU GLN PHE GLN THR HIS ILE ASP THR ALA GLY LEU SEQRES 13 B 183 GLY THR GLN GLN VAL ALA GLU GLN ILE ALA ALA GLN VAL SEQRES 14 B 183 GLY LEU THR LEU ALA PRO PRO PRO GLN GLY ALA LEU HIS SEQRES 15 B 183 TRP MODRES 2VLI MSE A 40 MET SELENOMETHIONINE MODRES 2VLI MSE A 60 MET SELENOMETHIONINE MODRES 2VLI MSE A 65 MET SELENOMETHIONINE MODRES 2VLI MSE A 96 MET SELENOMETHIONINE MODRES 2VLI MSE B 40 MET SELENOMETHIONINE MODRES 2VLI MSE B 60 MET SELENOMETHIONINE MODRES 2VLI MSE B 65 MET SELENOMETHIONINE MODRES 2VLI MSE B 96 MET SELENOMETHIONINE HET MSE A 40 8 HET MSE A 60 8 HET MSE A 65 8 HET MSE A 96 8 HET MSE B 40 8 HET MSE B 60 8 HET MSE B 65 8 HET MSE B 96 8 HET CD A1177 1 HET CL A1178 1 HETNAM MSE SELENOMETHIONINE HETNAM CD CADMIUM ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 CD CD 2+ FORMUL 4 CL CL 1- FORMUL 5 HOH *226(H2 O) HELIX 1 1 THR A 19 LEU A 29 1 11 HELIX 2 2 PRO A 37 LEU A 47 1 11 HELIX 3 3 ASP A 54 HIS A 58 5 5 HELIX 4 4 MSE A 60 ALA A 76 1 17 HELIX 5 5 ASP A 88 ARG A 102 1 15 HELIX 6 6 PRO A 114 ARG A 124 1 11 HELIX 7 7 ASN A 131 ARG A 143 1 13 HELIX 8 8 GLY A 144 GLN A 148 5 5 HELIX 9 9 GLY A 157 GLY A 170 1 14 HELIX 10 10 PRO B 13 VAL B 16 5 4 HELIX 11 11 GLY B 17 LEU B 29 1 13 HELIX 12 12 PRO B 37 THR B 48 1 12 HELIX 13 13 ASP B 54 HIS B 58 5 5 HELIX 14 14 MSE B 60 ALA B 76 1 17 HELIX 15 15 ASP B 88 ARG B 102 1 15 HELIX 16 16 PRO B 114 ARG B 123 1 10 HELIX 17 17 ARG B 124 GLN B 127 5 4 HELIX 18 18 ASN B 131 ARG B 143 1 13 HELIX 19 19 GLY B 144 GLN B 148 5 5 HELIX 20 20 GLY B 157 GLY B 170 1 14 SHEET 1 AA 5 PHE A 33 VAL A 34 0 SHEET 2 AA 5 LEU A 80 VAL A 84 1 N ILE A 81 O PHE A 33 SHEET 3 AA 5 ILE A 7 ASN A 11 1 O ILE A 8 N VAL A 82 SHEET 4 AA 5 HIS A 107 ILE A 112 1 O HIS A 107 N TRP A 9 SHEET 5 AA 5 HIS A 150 ASP A 152 1 O ILE A 151 N ILE A 112 SHEET 1 BA 5 PHE B 33 VAL B 34 0 SHEET 2 BA 5 LEU B 80 VAL B 84 1 N ILE B 81 O PHE B 33 SHEET 3 BA 5 ILE B 7 ASN B 11 1 O ILE B 8 N VAL B 82 SHEET 4 BA 5 VAL B 106 ILE B 112 1 O HIS B 107 N TRP B 9 SHEET 5 BA 5 HIS B 150 ASP B 152 1 O ILE B 151 N ILE B 112 LINK C GLU A 39 N MSE A 40 1555 1555 1.33 LINK C MSE A 40 N GLY A 41 1555 1555 1.34 LINK C PRO A 59 N MSE A 60 1555 1555 1.33 LINK C MSE A 60 N TRP A 61 1555 1555 1.33 LINK C LEU A 64 N MSE A 65 1555 1555 1.33 LINK C MSE A 65 N LEU A 66 1555 1555 1.33 LINK C LEU A 95 N MSE A 96 1555 1555 1.34 LINK C MSE A 96 N SER A 97 1555 1555 1.34 LINK C GLU B 39 N MSE B 40 1555 1555 1.33 LINK C MSE B 40 N GLY B 41 1555 1555 1.33 LINK C PRO B 59 N MSE B 60 1555 1555 1.33 LINK C MSE B 60 N TRP B 61 1555 1555 1.33 LINK C LEU B 64 N MSE B 65 1555 1555 1.33 LINK C MSE B 65 N LEU B 66 1555 1555 1.34 LINK C LEU B 95 N MSE B 96 1555 1555 1.33 LINK C MSE B 96 N SER B 97 1555 1555 1.32 LINK OE2 GLU A 145 CD CD A1177 1555 1555 2.33 LINK OE1 GLU A 145 CD CD A1177 1555 1555 2.59 LINK ND1 HIS A 150 CD CD A1177 1555 1555 2.34 LINK CD CD A1177 CL CL A1178 1555 1555 2.62 LINK CD CD A1177 OE2 GLU B 145 1555 1555 2.64 LINK CD CD A1177 OE1 GLU B 145 1555 1555 2.37 LINK CD CD A1177 ND1 HIS B 150 1555 1555 2.45 CISPEP 1 GLN A 148 THR A 149 0 8.25 CISPEP 2 GLN B 148 THR B 149 0 -0.71 SITE 1 AC1 5 GLU A 145 HIS A 150 CL A1178 GLU B 145 SITE 2 AC1 5 HIS B 150 SITE 1 AC2 4 HIS A 150 CD A1177 GLU B 145 HIS B 150 CRYST1 81.360 118.160 81.110 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012291 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008463 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012329 0.00000