HEADER IMMUNE SYSTEM 15-JAN-08 2VLM TITLE THE STRUCTURAL DYNAMICS AND ENERGETICS OF AN IMMUNODOMINANT TITLE 2 T-CELL RECEPTOR ARE PROGRAMMED BY ITS VBETA DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: JM22 TCR ALPHA CHAIN; COMPND 3 CHAIN: D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: JM22 TCR BETA CHAIN; COMPND 7 CHAIN: E; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMMUNE SYSTEM, HOST-VIRUS INTERACTION, IMMUNE KEYWDS 2 SYSTEM/RECEPTOR/COMPLEX, IMMUNODOMINANCE, IMMUNOGLOBULIN DOMAIN, KEYWDS 3 TCR, MHC, FLU, MHC I, T-CELL, COMPLEX, MEMBRANE, RECEPTOR, IMMUNE KEYWDS 4 RESPONSE EXPDTA X-RAY DIFFRACTION AUTHOR J.ISHIZUKA,G.STEWART-JONES,A.VAN DER MERWE,J.BELL,A.MCMICHAEL, AUTHOR 2 Y.JONES REVDAT 4 13-JUL-11 2VLM 1 VERSN REVDAT 3 24-FEB-09 2VLM 1 VERSN REVDAT 2 26-FEB-08 2VLM 1 JRNL REVDAT 1 22-JAN-08 2VLM 0 JRNL AUTH J.ISHIZUKA,G.STEWART-JONES,A.VAN DER MERWE,J.BELL, JRNL AUTH 2 A.MCMICHAEL,Y.JONES JRNL TITL THE STRUCTURAL DYNAMICS AND ENERGETICS OF AN IMMUNODOMINANT JRNL TITL 2 T-CELL RECEPTOR ARE PROGRAMMED BY ITS VBETA DOMAIN JRNL REF IMMUNITY V. 28 171 2008 JRNL REFN ISSN 1074-7613 JRNL PMID 18275829 JRNL DOI 10.1016/J.IMMUNI.2007.12.018 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.1 REMARK 3 NUMBER OF REFLECTIONS : 27792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1486 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2261 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 145 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3341 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 337 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.227 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.275 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3425 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4654 ; 1.492 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 420 ; 7.315 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 169 ;39.503 ;24.852 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 550 ;18.913 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;18.360 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 500 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2659 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1457 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2281 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 284 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 49 ; 0.197 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2172 ; 0.855 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3414 ; 1.411 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1447 ; 2.179 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1240 ; 3.260 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 3 D 115 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8597 40.1775 51.4349 REMARK 3 T TENSOR REMARK 3 T11: -0.0878 T22: -0.0453 REMARK 3 T33: -0.0398 T12: 0.0301 REMARK 3 T13: 0.0064 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 3.3541 L22: 1.0683 REMARK 3 L33: 2.2343 L12: 0.8470 REMARK 3 L13: -0.4456 L23: -0.2846 REMARK 3 S TENSOR REMARK 3 S11: 0.1404 S12: 0.0795 S13: -0.0043 REMARK 3 S21: 0.0323 S22: -0.0430 S23: -0.0598 REMARK 3 S31: 0.0105 S32: 0.0768 S33: -0.0974 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 116 D 201 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4032 36.6763 81.4310 REMARK 3 T TENSOR REMARK 3 T11: -0.1381 T22: 0.0324 REMARK 3 T33: 0.0602 T12: 0.0260 REMARK 3 T13: -0.0400 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 8.0051 L22: 5.2990 REMARK 3 L33: 5.2042 L12: 3.0654 REMARK 3 L13: 4.5170 L23: 1.9732 REMARK 3 S TENSOR REMARK 3 S11: -0.3228 S12: -0.1988 S13: 0.8869 REMARK 3 S21: -0.3563 S22: -0.0781 S23: 0.5446 REMARK 3 S31: -0.3843 S32: -0.4967 S33: 0.4009 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 5 E 115 REMARK 3 ORIGIN FOR THE GROUP (A): 28.5256 52.6075 61.3869 REMARK 3 T TENSOR REMARK 3 T11: -0.0945 T22: -0.0260 REMARK 3 T33: -0.0386 T12: -0.0250 REMARK 3 T13: 0.0132 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.6761 L22: 1.7902 REMARK 3 L33: 8.1784 L12: 0.0617 REMARK 3 L13: -2.5048 L23: 1.4992 REMARK 3 S TENSOR REMARK 3 S11: 0.1639 S12: -0.0601 S13: 0.0311 REMARK 3 S21: 0.0098 S22: -0.0767 S23: -0.0438 REMARK 3 S31: -0.4907 S32: 0.3262 S33: -0.0872 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 116 E 244 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4440 37.6996 85.2181 REMARK 3 T TENSOR REMARK 3 T11: -0.0806 T22: -0.0198 REMARK 3 T33: -0.0108 T12: 0.0273 REMARK 3 T13: -0.0115 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.8580 L22: 1.2985 REMARK 3 L33: 1.2737 L12: 0.3459 REMARK 3 L13: -0.2030 L23: 0.3471 REMARK 3 S TENSOR REMARK 3 S11: 0.0551 S12: -0.1479 S13: -0.0419 REMARK 3 S21: -0.0658 S22: 0.0271 S23: -0.1092 REMARK 3 S31: 0.0015 S32: 0.0767 S33: -0.0822 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2VLM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JAN-08. REMARK 100 THE PDBE ID CODE IS EBI-35025. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31111 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.98 REMARK 200 RESOLUTION RANGE LOW (A) : 30.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.9 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 30.1 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.10 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.68 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.79900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.59800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.19850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 91.99750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 18.39950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 2 REMARK 465 SER D 146 REMARK 465 GLN D 147 REMARK 465 SER D 148 REMARK 465 LYS D 158 REMARK 465 THR D 159 REMARK 465 VAL D 160 REMARK 465 LEU D 161 REMARK 465 ASP D 162 REMARK 465 MET D 163 REMARK 465 ARG D 164 REMARK 465 SER D 165 REMARK 465 MET D 166 REMARK 465 ASP D 167 REMARK 465 PHE D 168 REMARK 465 LYS D 169 REMARK 465 LYS D 202 REMARK 465 MET E 1 REMARK 465 VAL E 2 REMARK 465 ASP E 3 REMARK 465 GLY E 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB THR E 109 O HOH E 2076 2.12 REMARK 500 O HOH E 2035 O HOH E 2095 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU E 183 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 ARG E 209 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG E 209 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS D 60 -114.47 46.39 REMARK 500 SER D 95 -27.91 78.07 REMARK 500 ASP D 117 63.14 -152.70 REMARK 500 SER D 128 73.42 41.38 REMARK 500 ASP D 130 47.97 34.72 REMARK 500 ASN D 190 -23.52 76.52 REMARK 500 SER D 191 -160.18 -67.18 REMARK 500 ASP D 196 43.28 -107.58 REMARK 500 GLN E 43 -21.90 -142.41 REMARK 500 ASN E 55 -7.37 78.90 REMARK 500 ALA E 89 169.65 176.20 REMARK 500 SER E 99 45.49 -101.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP D 130 22.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VLJ RELATED DB: PDB REMARK 900 THE STRUCTURAL DYNAMICS AND ENERGETICS OF AN REMARK 900 IMMUNODOMINANT T-CELL RECEPTOR ARE REMARK 900 PROGRAMMED BY ITS VBETA DOMAIN REMARK 900 RELATED ID: 2VLK RELATED DB: PDB REMARK 900 THE STRUCTURAL DYNAMICS AND ENERGETICS OF AN REMARK 900 IMMUNODOMINANT T-CELL RECEPTOR ARE REMARK 900 PROGRAMMED BY ITS VBETA DOMAIN REMARK 900 RELATED ID: 2VLR RELATED DB: PDB REMARK 900 THE STRUCTURAL DYNAMICS AND ENERGETICS OF AN REMARK 900 IMMUNODOMINANT T-CELL RECEPTOR ARE REMARK 900 PROGRAMMED BY ITS VBETA DOMAIN DBREF 2VLM D 2 202 PDB 2VLM 2VLM 2 202 DBREF 2VLM E 1 244 PDB 2VLM 2VLM 1 244 SEQRES 1 D 201 MET GLN LEU LEU GLU GLN SER PRO GLN PHE LEU SER ILE SEQRES 2 D 201 GLN GLU GLY GLU ASN LEU THR VAL TYR CYS ASN SER SER SEQRES 3 D 201 SER VAL PHE SER SER LEU GLN TRP TYR ARG GLN GLU PRO SEQRES 4 D 201 GLY GLU GLY PRO VAL LEU LEU VAL THR VAL VAL THR GLY SEQRES 5 D 201 GLY GLU VAL LYS LYS LEU LYS ARG LEU THR PHE GLN PHE SEQRES 6 D 201 GLY ASP ALA ARG LYS ASP SER SER LEU HIS ILE THR ALA SEQRES 7 D 201 ALA GLN PRO GLY ASP THR GLY LEU TYR LEU CYS ALA GLY SEQRES 8 D 201 ALA GLY SER GLN GLY ASN LEU ILE PHE GLY LYS GLY THR SEQRES 9 D 201 LYS LEU SER VAL LYS PRO ASN ILE GLN ASN PRO ASP PRO SEQRES 10 D 201 ALA VAL TYR GLN LEU ARG ASP SER LYS SER SER ASP LYS SEQRES 11 D 201 SER VAL CYS LEU PHE THR ASP PHE ASP SER GLN THR ASN SEQRES 12 D 201 VAL SER GLN SER LYS ASP SER ASP VAL TYR ILE THR ASP SEQRES 13 D 201 LYS THR VAL LEU ASP MET ARG SER MET ASP PHE LYS SER SEQRES 14 D 201 ASN SER ALA VAL ALA TRP SER ASN LYS SER ASP PHE ALA SEQRES 15 D 201 CYS ALA ASN ALA PHE ASN ASN SER ILE ILE PRO GLU ASP SEQRES 16 D 201 THR PHE PHE PRO SER LYS SEQRES 1 E 244 MET VAL ASP GLY GLY ILE THR GLN SER PRO LYS TYR LEU SEQRES 2 E 244 PHE ARG LYS GLU GLY GLN ASN VAL THR LEU SER CYS GLU SEQRES 3 E 244 GLN ASN LEU ASN HIS ASP ALA MET TYR TRP TYR ARG GLN SEQRES 4 E 244 ASP PRO GLY GLN GLY LEU ARG LEU ILE TYR TYR SER GLN SEQRES 5 E 244 ILE VAL ASN ASP PHE GLN LYS GLY ASP ILE ALA GLU GLY SEQRES 6 E 244 TYR SER VAL SER ARG GLU LYS LYS GLU SER PHE PRO LEU SEQRES 7 E 244 THR VAL THR SER ALA GLN LYS ASN PRO THR ALA PHE TYR SEQRES 8 E 244 LEU CYS ALA SER SER SER ARG SER SER TYR GLU GLN TYR SEQRES 9 E 244 PHE GLY PRO GLY THR ARG LEU THR VAL THR GLU ASP LEU SEQRES 10 E 244 LYS ASN VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SEQRES 11 E 244 SER GLU ALA GLU ILE SER HIS THR GLN LYS ALA THR LEU SEQRES 12 E 244 VAL CYS LEU ALA THR GLY PHE TYR PRO ASP HIS VAL GLU SEQRES 13 E 244 LEU SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SER GLY SEQRES 14 E 244 VAL SER THR ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA SEQRES 15 E 244 LEU ASN ASP SER ARG TYR SER LEU SER SER ARG LEU ARG SEQRES 16 E 244 VAL SER ALA THR PHE TRP GLN ASN PRO ARG ASN HIS PHE SEQRES 17 E 244 ARG CYS GLN VAL GLN PHE TYR GLY LEU SER GLU ASN ASP SEQRES 18 E 244 GLU TRP THR GLN ASP ARG ALA LYS PRO VAL THR GLN ILE SEQRES 19 E 244 VAL SER ALA GLU ALA TRP GLY ARG ALA ASP FORMUL 3 HOH *337(H2 O) HELIX 1 1 GLN D 81 THR D 85 5 5 HELIX 2 2 ALA D 183 PHE D 188 1 6 HELIX 3 3 ASP E 116 VAL E 120 5 5 HELIX 4 4 SER E 131 GLN E 139 1 9 HELIX 5 5 ALA E 198 GLN E 202 1 5 SHEET 1 DA 5 LEU D 5 SER D 8 0 SHEET 2 DA 5 LEU D 20 SER D 26 -1 O TYR D 23 N SER D 8 SHEET 3 DA 5 ASP D 72 ILE D 77 -1 O SER D 73 N CYS D 24 SHEET 4 DA 5 LEU D 62 PHE D 66 -1 O THR D 63 N HIS D 76 SHEET 5 DA 5 VAL D 56 LEU D 59 -1 O LYS D 57 N PHE D 64 SHEET 1 DB 5 PHE D 11 GLN D 15 0 SHEET 2 DB 5 THR D 105 LYS D 110 1 O LYS D 106 N LEU D 12 SHEET 3 DB 5 GLY D 86 ALA D 93 -1 O GLY D 86 N LEU D 107 SHEET 4 DB 5 SER D 32 GLN D 38 -1 O SER D 32 N ALA D 93 SHEET 5 DB 5 VAL D 45 VAL D 50 -1 O VAL D 45 N ARG D 37 SHEET 1 DC 4 PHE D 11 GLN D 15 0 SHEET 2 DC 4 THR D 105 LYS D 110 1 O LYS D 106 N LEU D 12 SHEET 3 DC 4 GLY D 86 ALA D 93 -1 O GLY D 86 N LEU D 107 SHEET 4 DC 4 ILE D 100 PHE D 101 -1 O ILE D 100 N GLY D 92 SHEET 1 DD 8 TYR D 154 THR D 156 0 SHEET 2 DD 8 SER D 172 TRP D 176 -1 O VAL D 174 N THR D 156 SHEET 3 DD 8 SER D 132 THR D 137 -1 O CYS D 134 N ALA D 175 SHEET 4 DD 8 ALA D 119 ASP D 125 -1 O ALA D 119 N THR D 137 SHEET 5 DD 8 GLU E 124 GLU E 129 -1 O GLU E 129 N ARG D 124 SHEET 6 DD 8 LYS E 140 PHE E 150 -1 O VAL E 144 N PHE E 128 SHEET 7 DD 8 TYR E 188 SER E 197 -1 O TYR E 188 N PHE E 150 SHEET 8 DD 8 VAL E 170 THR E 172 -1 O SER E 171 N ARG E 193 SHEET 1 DE 8 TYR D 154 THR D 156 0 SHEET 2 DE 8 SER D 172 TRP D 176 -1 O VAL D 174 N THR D 156 SHEET 3 DE 8 SER D 132 THR D 137 -1 O CYS D 134 N ALA D 175 SHEET 4 DE 8 ALA D 119 ASP D 125 -1 O ALA D 119 N THR D 137 SHEET 5 DE 8 GLU E 124 GLU E 129 -1 O GLU E 129 N ARG D 124 SHEET 6 DE 8 LYS E 140 PHE E 150 -1 O VAL E 144 N PHE E 128 SHEET 7 DE 8 TYR E 188 SER E 197 -1 O TYR E 188 N PHE E 150 SHEET 8 DE 8 LEU E 177 LYS E 178 -1 O LEU E 177 N SER E 189 SHEET 1 EA 4 ILE E 6 SER E 9 0 SHEET 2 EA 4 VAL E 21 GLN E 27 -1 O SER E 24 N SER E 9 SHEET 3 EA 4 LEU E 78 VAL E 80 -1 O LEU E 78 N LEU E 23 SHEET 4 EA 4 TYR E 66 VAL E 68 -1 O SER E 67 N THR E 79 SHEET 1 EB 6 TYR E 12 LYS E 16 0 SHEET 2 EB 6 THR E 109 THR E 114 1 O ARG E 110 N LEU E 13 SHEET 3 EB 6 ALA E 89 SER E 96 -1 O ALA E 89 N LEU E 111 SHEET 4 EB 6 ALA E 33 ASP E 40 -1 O ALA E 33 N SER E 96 SHEET 5 EB 6 GLY E 44 SER E 51 -1 O GLY E 44 N ASP E 40 SHEET 6 EB 6 GLN E 58 LYS E 59 -1 O GLN E 58 N TYR E 50 SHEET 1 EC 4 TYR E 12 LYS E 16 0 SHEET 2 EC 4 THR E 109 THR E 114 1 O ARG E 110 N LEU E 13 SHEET 3 EC 4 ALA E 89 SER E 96 -1 O ALA E 89 N LEU E 111 SHEET 4 EC 4 TYR E 104 PHE E 105 -1 O TYR E 104 N SER E 95 SHEET 1 ED 4 LYS E 164 VAL E 166 0 SHEET 2 ED 4 VAL E 155 VAL E 161 -1 O TRP E 159 N VAL E 166 SHEET 3 ED 4 HIS E 207 PHE E 214 -1 O ARG E 209 N TRP E 160 SHEET 4 ED 4 GLN E 233 TRP E 240 -1 O GLN E 233 N PHE E 214 SSBOND 1 CYS D 24 CYS D 90 1555 1555 2.00 SSBOND 2 CYS D 134 CYS D 184 1555 1555 2.03 SSBOND 3 CYS E 25 CYS E 93 1555 1555 1.99 SSBOND 4 CYS E 145 CYS E 210 1555 1555 1.99 CISPEP 1 SER D 8 PRO D 9 0 -8.71 CISPEP 2 SER E 9 PRO E 10 0 -3.86 CISPEP 3 TYR E 151 PRO E 152 0 0.64 CRYST1 87.371 87.371 110.397 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011445 0.006608 0.000000 0.00000 SCALE2 0.000000 0.013216 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009058 0.00000