HEADER OXIDOREDUCTASE 21-JAN-08 2VM1 TITLE CRYSTAL STRUCTURE OF BARLEY THIOREDOXIN H ISOFORM 1 CRYSTALLIZED USING TITLE 2 AMMONIUM SULFATE AS PRECIPITANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN H ISOFORM 1.; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: THIOREDOXIN; COMPND 5 EC: 1.8.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HORDEUM VULGARE VAR. DISTICHUM; SOURCE 3 ORGANISM_COMMON: TWO-ROWED BARLEY; SOURCE 4 ORGANISM_TAXID: 112509; SOURCE 5 VARIANT: BARKE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS OXIDOREDUCTASE, PROTEIN DISULFIDE REDUCTASE, THIOREDOXIN-FOLD EXPDTA X-RAY DIFFRACTION AUTHOR K.MAEDA,P.HAGGLUND,C.FINNIE,B.SVENSSON,A.HENRIKSEN REVDAT 5 12-JUL-17 2VM1 1 REVDAT 4 13-JUL-11 2VM1 1 VERSN REVDAT 3 24-FEB-09 2VM1 1 VERSN REVDAT 2 17-JUN-08 2VM1 1 JRNL REMARK REVDAT 1 29-APR-08 2VM1 0 JRNL AUTH K.MAEDA,P.HAGGLUND,C.FINNIE,B.SVENSSON,A.HENRIKSEN JRNL TITL CRYSTAL STRUCTURES OF BARLEY THIOREDOXIN H ISOFORMS HVTRXH1 JRNL TITL 2 AND HVTRXH2 REVEAL FEATURES INVOLVED IN PROTEIN RECOGNITION JRNL TITL 3 AND POSSIBLY IN DISCRIMINATING THE ISOFORM SPECIFICITY. JRNL REF PROTEIN SCI. V. 17 1015 2008 JRNL REFN ISSN 0961-8368 JRNL PMID 18424513 JRNL DOI 10.1110/PS.083460308 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 121.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 51064 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2732 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3615 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 193 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3372 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 464 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.883 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3604 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4892 ; 1.181 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 470 ; 5.050 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;33.501 ;25.278 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 633 ;11.717 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.390 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 547 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2704 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1712 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2515 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 362 ; 0.121 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 103 ; 0.177 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 30 ; 0.126 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2332 ; 0.755 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3696 ; 1.186 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1408 ; 2.072 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1195 ; 3.355 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7670 -12.5730 14.7980 REMARK 3 T TENSOR REMARK 3 T11: -0.0560 T22: -0.0143 REMARK 3 T33: -0.0504 T12: 0.0035 REMARK 3 T13: -0.0181 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.2194 L22: 1.0271 REMARK 3 L33: 0.9869 L12: -0.2822 REMARK 3 L13: 0.3110 L23: 0.1825 REMARK 3 S TENSOR REMARK 3 S11: 0.0120 S12: 0.0243 S13: 0.0208 REMARK 3 S21: 0.0426 S22: -0.0132 S23: 0.0189 REMARK 3 S31: 0.0444 S32: 0.0221 S33: 0.0012 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): -10.3490 -2.6210 43.8020 REMARK 3 T TENSOR REMARK 3 T11: -0.0518 T22: -0.0244 REMARK 3 T33: -0.0625 T12: 0.0080 REMARK 3 T13: 0.0138 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.6440 L22: 1.3336 REMARK 3 L33: 1.3106 L12: -0.6376 REMARK 3 L13: -0.2317 L23: 0.6694 REMARK 3 S TENSOR REMARK 3 S11: 0.0349 S12: 0.0021 S13: -0.0315 REMARK 3 S21: 0.0108 S22: -0.0084 S23: -0.0602 REMARK 3 S31: 0.0035 S32: -0.0116 S33: -0.0265 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 118 REMARK 3 ORIGIN FOR THE GROUP (A): 23.9720 -8.3930 46.1580 REMARK 3 T TENSOR REMARK 3 T11: -0.0561 T22: 0.0133 REMARK 3 T33: -0.0596 T12: 0.0057 REMARK 3 T13: -0.0180 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 1.1005 L22: 0.4193 REMARK 3 L33: 1.5863 L12: -0.2795 REMARK 3 L13: 0.7714 L23: -0.3212 REMARK 3 S TENSOR REMARK 3 S11: -0.0190 S12: -0.0671 S13: 0.0126 REMARK 3 S21: -0.0059 S22: -0.0210 S23: 0.0177 REMARK 3 S31: -0.0737 S32: -0.0896 S33: 0.0400 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 6 D 114 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4230 -2.6500 -11.4880 REMARK 3 T TENSOR REMARK 3 T11: -0.0496 T22: 0.0143 REMARK 3 T33: -0.0689 T12: -0.0146 REMARK 3 T13: 0.0020 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.0100 L22: 0.7054 REMARK 3 L33: 1.3632 L12: 0.1970 REMARK 3 L13: -0.1068 L23: 0.0705 REMARK 3 S TENSOR REMARK 3 S11: -0.0150 S12: 0.0512 S13: 0.0524 REMARK 3 S21: -0.0142 S22: 0.0283 S23: 0.0160 REMARK 3 S31: -0.0059 S32: 0.1281 S33: -0.0132 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VM1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1290035027. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53797 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.44050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 16.76650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.44050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 16.76650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 4 REMARK 465 SER A 115 REMARK 465 ALA A 116 REMARK 465 SER A 117 REMARK 465 THR A 118 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 GLU B 4 REMARK 465 ALA B 116 REMARK 465 SER B 117 REMARK 465 THR B 118 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 ALA C 3 REMARK 465 GLU C 4 REMARK 465 GLU C 5 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 ALA D 3 REMARK 465 GLU D 4 REMARK 465 GLU D 5 REMARK 465 ALA D 116 REMARK 465 SER D 117 REMARK 465 THR D 118 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 5 CB CG CD OE1 OE2 REMARK 470 SER B 115 CA C O CB OG REMARK 470 SER D 115 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 70 70.78 -109.46 REMARK 500 LEU B 70 69.02 -117.39 REMARK 500 LEU C 70 70.67 -105.79 REMARK 500 LEU D 70 74.95 -112.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D1116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C1119 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D1117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1116 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VM2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BARLEY THIOREDOXIN H ISOFORM 1 CRYSTALLIZED REMARK 900 USING PEG AS PRECIPITANT DBREF 2VM1 A 1 118 UNP Q7XZK3 Q7XZK3_HORVD 1 118 DBREF 2VM1 B 1 118 UNP Q7XZK3 Q7XZK3_HORVD 1 118 DBREF 2VM1 C 1 118 UNP Q7XZK3 Q7XZK3_HORVD 1 118 DBREF 2VM1 D 1 118 UNP Q7XZK3 Q7XZK3_HORVD 1 118 SEQRES 1 A 118 MET ALA ALA GLU GLU GLY ALA VAL ILE ALA CYS HIS THR SEQRES 2 A 118 LYS GLN GLU PHE ASP THR HIS MET ALA ASN GLY LYS ASP SEQRES 3 A 118 THR GLY LYS LEU VAL ILE ILE ASP PHE THR ALA SER TRP SEQRES 4 A 118 CYS GLY PRO CYS ARG VAL ILE ALA PRO VAL PHE ALA GLU SEQRES 5 A 118 TYR ALA LYS LYS PHE PRO GLY ALA ILE PHE LEU LYS VAL SEQRES 6 A 118 ASP VAL ASP GLU LEU LYS ASP VAL ALA GLU ALA TYR ASN SEQRES 7 A 118 VAL GLU ALA MET PRO THR PHE LEU PHE ILE LYS ASP GLY SEQRES 8 A 118 GLU LYS VAL ASP SER VAL VAL GLY GLY ARG LYS ASP ASP SEQRES 9 A 118 ILE HIS THR LYS ILE VAL ALA LEU MET GLY SER ALA SER SEQRES 10 A 118 THR SEQRES 1 B 118 MET ALA ALA GLU GLU GLY ALA VAL ILE ALA CYS HIS THR SEQRES 2 B 118 LYS GLN GLU PHE ASP THR HIS MET ALA ASN GLY LYS ASP SEQRES 3 B 118 THR GLY LYS LEU VAL ILE ILE ASP PHE THR ALA SER TRP SEQRES 4 B 118 CYS GLY PRO CYS ARG VAL ILE ALA PRO VAL PHE ALA GLU SEQRES 5 B 118 TYR ALA LYS LYS PHE PRO GLY ALA ILE PHE LEU LYS VAL SEQRES 6 B 118 ASP VAL ASP GLU LEU LYS ASP VAL ALA GLU ALA TYR ASN SEQRES 7 B 118 VAL GLU ALA MET PRO THR PHE LEU PHE ILE LYS ASP GLY SEQRES 8 B 118 GLU LYS VAL ASP SER VAL VAL GLY GLY ARG LYS ASP ASP SEQRES 9 B 118 ILE HIS THR LYS ILE VAL ALA LEU MET GLY SER ALA SER SEQRES 10 B 118 THR SEQRES 1 C 118 MET ALA ALA GLU GLU GLY ALA VAL ILE ALA CYS HIS THR SEQRES 2 C 118 LYS GLN GLU PHE ASP THR HIS MET ALA ASN GLY LYS ASP SEQRES 3 C 118 THR GLY LYS LEU VAL ILE ILE ASP PHE THR ALA SER TRP SEQRES 4 C 118 CYS GLY PRO CYS ARG VAL ILE ALA PRO VAL PHE ALA GLU SEQRES 5 C 118 TYR ALA LYS LYS PHE PRO GLY ALA ILE PHE LEU LYS VAL SEQRES 6 C 118 ASP VAL ASP GLU LEU LYS ASP VAL ALA GLU ALA TYR ASN SEQRES 7 C 118 VAL GLU ALA MET PRO THR PHE LEU PHE ILE LYS ASP GLY SEQRES 8 C 118 GLU LYS VAL ASP SER VAL VAL GLY GLY ARG LYS ASP ASP SEQRES 9 C 118 ILE HIS THR LYS ILE VAL ALA LEU MET GLY SER ALA SER SEQRES 10 C 118 THR SEQRES 1 D 118 MET ALA ALA GLU GLU GLY ALA VAL ILE ALA CYS HIS THR SEQRES 2 D 118 LYS GLN GLU PHE ASP THR HIS MET ALA ASN GLY LYS ASP SEQRES 3 D 118 THR GLY LYS LEU VAL ILE ILE ASP PHE THR ALA SER TRP SEQRES 4 D 118 CYS GLY PRO CYS ARG VAL ILE ALA PRO VAL PHE ALA GLU SEQRES 5 D 118 TYR ALA LYS LYS PHE PRO GLY ALA ILE PHE LEU LYS VAL SEQRES 6 D 118 ASP VAL ASP GLU LEU LYS ASP VAL ALA GLU ALA TYR ASN SEQRES 7 D 118 VAL GLU ALA MET PRO THR PHE LEU PHE ILE LYS ASP GLY SEQRES 8 D 118 GLU LYS VAL ASP SER VAL VAL GLY GLY ARG LYS ASP ASP SEQRES 9 D 118 ILE HIS THR LYS ILE VAL ALA LEU MET GLY SER ALA SER SEQRES 10 D 118 THR HET SO4 B1116 5 HET SO4 C1119 5 HET SO4 D1116 5 HET SO4 D1117 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 4(O4 S 2-) FORMUL 9 HOH *464(H2 O) HELIX 1 1 THR A 13 GLY A 28 1 16 HELIX 2 2 CYS A 40 PHE A 57 1 18 HELIX 3 3 LEU A 70 TYR A 77 1 8 HELIX 4 4 ARG A 101 GLY A 114 1 14 HELIX 5 5 THR B 13 GLY B 28 1 16 HELIX 6 6 CYS B 40 PHE B 57 1 18 HELIX 7 7 LEU B 70 TYR B 77 1 8 HELIX 8 8 ARG B 101 GLY B 114 1 14 HELIX 9 9 THR C 13 GLY C 28 1 16 HELIX 10 10 CYS C 40 VAL C 45 5 6 HELIX 11 11 ILE C 46 PHE C 57 1 12 HELIX 12 12 LEU C 70 TYR C 77 1 8 HELIX 13 13 ARG C 101 GLY C 114 1 14 HELIX 14 14 THR D 13 GLY D 28 1 16 HELIX 15 15 CYS D 40 PHE D 57 1 18 HELIX 16 16 LEU D 70 ASN D 78 1 9 HELIX 17 17 ARG D 101 GLY D 114 1 14 SHEET 1 AA 5 VAL A 8 ALA A 10 0 SHEET 2 AA 5 ILE A 61 ASP A 66 1 O PHE A 62 N ILE A 9 SHEET 3 AA 5 VAL A 31 THR A 36 1 O ILE A 32 N LEU A 63 SHEET 4 AA 5 THR A 84 LYS A 89 -1 O THR A 84 N PHE A 35 SHEET 5 AA 5 GLU A 92 VAL A 98 -1 O GLU A 92 N LYS A 89 SHEET 1 BA 5 VAL B 8 ALA B 10 0 SHEET 2 BA 5 ILE B 61 ASP B 66 1 O PHE B 62 N ILE B 9 SHEET 3 BA 5 VAL B 31 THR B 36 1 O ILE B 32 N LEU B 63 SHEET 4 BA 5 THR B 84 LYS B 89 -1 O THR B 84 N PHE B 35 SHEET 5 BA 5 GLU B 92 VAL B 98 -1 O GLU B 92 N LYS B 89 SHEET 1 CA 5 ILE C 9 ALA C 10 0 SHEET 2 CA 5 ILE C 61 ASP C 66 1 O PHE C 62 N ILE C 9 SHEET 3 CA 5 VAL C 31 THR C 36 1 O ILE C 32 N LEU C 63 SHEET 4 CA 5 THR C 84 LYS C 89 -1 O THR C 84 N PHE C 35 SHEET 5 CA 5 GLU C 92 VAL C 98 -1 O GLU C 92 N LYS C 89 SHEET 1 DA 5 ILE D 9 ALA D 10 0 SHEET 2 DA 5 ILE D 61 ASP D 66 1 O PHE D 62 N ILE D 9 SHEET 3 DA 5 VAL D 31 THR D 36 1 O ILE D 32 N LEU D 63 SHEET 4 DA 5 THR D 84 LYS D 89 -1 O THR D 84 N PHE D 35 SHEET 5 DA 5 GLU D 92 VAL D 98 -1 O GLU D 92 N LYS D 89 SSBOND 1 CYS A 40 CYS A 43 1555 1555 2.87 SSBOND 2 CYS B 40 CYS B 43 1555 1555 2.73 SSBOND 3 CYS C 40 CYS C 43 1555 1555 2.97 SSBOND 4 CYS D 40 CYS D 43 1555 1555 2.71 CISPEP 1 MET A 82 PRO A 83 0 -3.29 CISPEP 2 MET A 82 PRO A 83 0 -4.74 CISPEP 3 MET B 82 PRO B 83 0 -6.14 CISPEP 4 MET C 82 PRO C 83 0 -2.52 CISPEP 5 MET C 82 PRO C 83 0 -4.59 CISPEP 6 MET D 82 PRO D 83 0 -5.99 SITE 1 AC1 5 GLY D 100 ARG D 101 LYS D 102 ASP D 103 SITE 2 AC1 5 HOH D2110 SITE 1 AC2 5 GLY C 100 ARG C 101 LYS C 102 ASP C 103 SITE 2 AC2 5 HOH C2110 SITE 1 AC3 1 LYS D 108 SITE 1 AC4 6 GLY B 100 ARG B 101 LYS B 102 ASP B 103 SITE 2 AC4 6 HOH B2133 PRO C 48 CRYST1 120.881 33.533 131.048 90.00 112.31 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008273 0.000000 0.003395 0.00000 SCALE2 0.000000 0.029821 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008248 0.00000