HEADER HYDROLASE 30-JAN-08 2VN4 TITLE GLYCOSIDE HYDROLASE FAMILY 15 GLUCOAMYLASE FROM HYPOCREA JECORINA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOAMYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYPOCREA JECORINA; SOURCE 3 ORGANISM_TAXID: 51453 KEYWDS HYDROLASE, CARBOHYDRATE BINDING, GLYCOSIDE HYDROLASE FAMILY 15, KEYWDS 2 GLUCOAMYLASE, AMYLOGLUCOSIDASE EXPDTA X-RAY DIFFRACTION AUTHOR R.BOTT,M.SANDGREN,H.HANSSON REVDAT 7 13-NOV-24 2VN4 1 REMARK REVDAT 6 13-DEC-23 2VN4 1 HETSYN REVDAT 5 29-JUL-20 2VN4 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 17-JAN-18 2VN4 1 REMARK REVDAT 3 20-OCT-09 2VN4 1 VERSN REVDAT 2 15-JAN-09 2VN4 1 VERSN REVDAT 1 20-MAY-08 2VN4 0 JRNL AUTH R.BOTT,M.SALDAJENO,W.CUEVAS,D.WARD,M.SCHEFFERS,W.AEHLE, JRNL AUTH 2 S.KARKEHABADI,M.SANDGREN,H.HANSSON JRNL TITL THREE-DIMENSIONAL STRUCTURE OF AN INTACT GLYCOSIDE HYDROLASE JRNL TITL 2 FAMILY 15 GLUCOAMYLASE FROM HYPOCREA JECORINA. JRNL REF BIOCHEMISTRY V. 47 5746 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18457422 JRNL DOI 10.1021/BI702413K REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 50812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2728 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3676 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 202 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4528 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 158 REMARK 3 SOLVENT ATOMS : 361 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4907 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6749 ; 1.204 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 612 ; 5.216 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;33.184 ;24.483 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 668 ;10.617 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;15.149 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 784 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3712 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2154 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3479 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 331 ; 0.111 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.177 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.127 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3027 ; 0.641 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4914 ; 1.171 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1878 ; 1.680 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1829 ; 2.545 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VN4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1290035127. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90718 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56858 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 76.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1GLM REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.20M AMMONIUM ACETATE, REMARK 280 0.10M BIS-TRIS PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.09250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.62000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.61600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.62000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.09250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.61600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 453 CA - CB - SG ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 44 70.13 42.99 REMARK 500 ASN A 171 30.06 -88.54 REMARK 500 CYS A 266 43.82 -99.90 REMARK 500 ASN A 317 -3.86 86.44 REMARK 500 SER A 415 -152.25 60.22 REMARK 500 ALA A 446 3.03 -61.68 REMARK 500 TRP A 525 -0.85 74.16 REMARK 500 HIS A 542 79.48 -150.12 REMARK 500 CYS A 587 -10.74 81.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2124 DISTANCE = 6.21 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VN7 RELATED DB: PDB REMARK 900 GLYCOSIDE HYDROLASE FAMILY 15 GLUCOAMYLASE FROM HYPOCREA JECORINA DBREF 2VN4 A 1 599 PDB 2VN4 2VN4 1 599 SEQRES 1 A 599 SER VAL ASP ASP PHE ILE SER THR GLU THR PRO ILE ALA SEQRES 2 A 599 LEU ASN ASN LEU LEU CYS ASN VAL GLY PRO ASP GLY CYS SEQRES 3 A 599 ARG ALA PHE GLY THR SER ALA GLY ALA VAL ILE ALA SER SEQRES 4 A 599 PRO SER THR ILE ASP PRO ASP TYR TYR TYR MET TRP THR SEQRES 5 A 599 ARG ASP SER ALA LEU VAL PHE LYS ASN LEU ILE ASP ARG SEQRES 6 A 599 PHE THR GLU THR TYR ASP ALA GLY LEU GLN ARG ARG ILE SEQRES 7 A 599 GLU GLN TYR ILE THR ALA GLN VAL THR LEU GLN GLY LEU SEQRES 8 A 599 SER ASN PRO SER GLY SER LEU ALA ASP GLY SER GLY LEU SEQRES 9 A 599 GLY GLU PRO LYS PHE GLU LEU THR LEU LYS PRO PHE THR SEQRES 10 A 599 GLY ASN TRP GLY ARG PRO GLN ARG ASP GLY PRO ALA LEU SEQRES 11 A 599 ARG ALA ILE ALA LEU ILE GLY TYR SER LYS TRP LEU ILE SEQRES 12 A 599 ASN ASN ASN TYR GLN SER THR VAL SER ASN VAL ILE TRP SEQRES 13 A 599 PRO ILE VAL ARG ASN ASP LEU ASN TYR VAL ALA GLN TYR SEQRES 14 A 599 TRP ASN GLN THR GLY PHE ASP LEU TRP GLU GLU VAL ASN SEQRES 15 A 599 GLY SER SER PHE PHE THR VAL ALA ASN GLN HIS ARG ALA SEQRES 16 A 599 LEU VAL GLU GLY ALA THR LEU ALA ALA THR LEU GLY GLN SEQRES 17 A 599 SER GLY SER ALA TYR SER SER VAL ALA PRO GLN VAL LEU SEQRES 18 A 599 CYS PHE LEU GLN ARG PHE TRP VAL SER SER GLY GLY TYR SEQRES 19 A 599 VAL ASP SER ASN ILE ASN THR ASN GLU GLY ARG THR GLY SEQRES 20 A 599 LYS ASP VAL ASN SER VAL LEU THR SER ILE HIS THR PHE SEQRES 21 A 599 ASP PRO ASN LEU GLY CYS ASP ALA GLY THR PHE GLN PRO SEQRES 22 A 599 CYS SER ASP LYS ALA LEU SER ASN LEU LYS VAL VAL VAL SEQRES 23 A 599 ASP SER PHE ARG SER ILE TYR GLY VAL ASN LYS GLY ILE SEQRES 24 A 599 PRO ALA GLY ALA ALA VAL ALA ILE GLY ARG TYR ALA GLU SEQRES 25 A 599 ASP VAL TYR TYR ASN GLY ASN PRO TRP TYR LEU ALA THR SEQRES 26 A 599 PHE ALA ALA ALA GLU GLN LEU TYR ASP ALA ILE TYR VAL SEQRES 27 A 599 TRP LYS LYS THR GLY SER ILE THR VAL THR ALA THR SER SEQRES 28 A 599 LEU ALA PHE PHE GLN GLU LEU VAL PRO GLY VAL THR ALA SEQRES 29 A 599 GLY THR TYR SER SER SER SER SER THR PHE THR ASN ILE SEQRES 30 A 599 ILE ASN ALA VAL SER THR TYR ALA ASP GLY PHE LEU SER SEQRES 31 A 599 GLU ALA ALA LYS TYR VAL PRO ALA ASP GLY SER LEU ALA SEQRES 32 A 599 GLU GLN PHE ASP ARG ASN SER GLY THR PRO LEU SER ALA SEQRES 33 A 599 LEU HIS LEU THR TRP SER TYR ALA SER PHE LEU THR ALA SEQRES 34 A 599 THR ALA ARG ARG ALA GLY ILE VAL PRO PRO SER TRP ALA SEQRES 35 A 599 ASN SER SER ALA SER THR ILE PRO SER THR CYS SER GLY SEQRES 36 A 599 ALA SER VAL VAL GLY SER TYR SER ARG PRO THR ALA THR SEQRES 37 A 599 SER PHE PRO PRO SER GLN THR PRO LYS PRO GLY VAL PRO SEQRES 38 A 599 SER GLY THR PRO TYR THR PRO LEU PRO CYS ALA THR PRO SEQRES 39 A 599 THR SER VAL ALA VAL THR PHE HIS GLU LEU VAL SER THR SEQRES 40 A 599 GLN PHE GLY GLN THR VAL LYS VAL ALA GLY ASN ALA ALA SEQRES 41 A 599 ALA LEU GLY ASN TRP SER THR SER ALA ALA VAL ALA LEU SEQRES 42 A 599 ASP ALA VAL ASN TYR ALA ASP ASN HIS PRO LEU TRP ILE SEQRES 43 A 599 GLY THR VAL ASN LEU GLU ALA GLY ASP VAL VAL GLU TYR SEQRES 44 A 599 LYS TYR ILE ASN VAL GLY GLN ASP GLY SER VAL THR TRP SEQRES 45 A 599 GLU SER ASP PRO ASN HIS THR TYR THR VAL PRO ALA VAL SEQRES 46 A 599 ALA CYS VAL THR GLN VAL VAL LYS GLU ASP THR TRP GLN SEQRES 47 A 599 SER MODRES 2VN4 ASN A 171 ASN GLYCOSYLATION SITE MODRES 2VN4 THR A 468 THR GLYCOSYLATION SITE MODRES 2VN4 SER A 473 SER GLYCOSYLATION SITE MODRES 2VN4 THR A 475 THR GLYCOSYLATION SITE MODRES 2VN4 SER A 482 SER GLYCOSYLATION SITE MODRES 2VN4 THR A 493 THR GLYCOSYLATION SITE MODRES 2VN4 ASN A 524 ASN GLYCOSYLATION SITE MODRES 2VN4 THR A 579 THR GLYCOSYLATION SITE MODRES 2VN4 THR A 581 THR GLYCOSYLATION SITE MODRES 2VN4 THR A 589 THR GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET MAN A 601 11 HET MAN A 602 11 HET MAN A 603 11 HET MAN A 605 11 HET MAN A 606 11 HET MAN A 607 11 HET MAN A 608 11 HET MAN A 609 11 HET NAG A 613 14 HET BTB A 620 14 HET BTB A 621 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN BTB BIS-TRIS BUFFER FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 3 MAN 8(C6 H12 O6) FORMUL 12 BTB 2(C8 H19 N O5) FORMUL 14 HOH *361(H2 O) HELIX 1 1 SER A 1 CYS A 19 1 19 HELIX 2 2 THR A 52 THR A 69 1 18 HELIX 3 3 ASP A 71 LEU A 91 1 21 HELIX 4 4 GLY A 101 GLU A 106 5 6 HELIX 5 5 ARG A 125 ASN A 145 1 21 HELIX 6 6 TYR A 147 ILE A 155 1 9 HELIX 7 7 ILE A 155 TRP A 170 1 16 HELIX 8 8 PHE A 186 GLY A 207 1 22 HELIX 9 9 GLY A 210 GLN A 225 1 16 HELIX 10 10 VAL A 250 THR A 259 1 10 HELIX 11 11 ASP A 261 GLY A 265 5 5 HELIX 12 12 SER A 275 SER A 291 1 17 HELIX 13 13 TYR A 293 LYS A 297 5 5 HELIX 14 14 VAL A 314 GLY A 318 5 5 HELIX 15 15 TRP A 321 GLY A 343 1 23 HELIX 16 16 SER A 351 VAL A 359 1 9 HELIX 17 17 SER A 371 LYS A 394 1 24 HELIX 18 18 LEU A 419 ALA A 434 1 16 HELIX 19 19 ASN A 443 THR A 448 5 6 HELIX 20 20 ALA A 519 GLY A 523 5 5 SHEET 1 AA 2 MET A 50 TRP A 51 0 SHEET 2 AA 2 LYS A 108 PHE A 109 -1 O PHE A 109 N MET A 50 SHEET 1 AB 3 GLY A 174 PHE A 175 0 SHEET 2 AB 3 ASN A 182 SER A 185 -1 O GLY A 183 N GLY A 174 SHEET 3 AB 3 ASN A 238 ILE A 239 -1 O ILE A 239 N SER A 184 SHEET 1 AC 2 TRP A 228 VAL A 229 0 SHEET 2 AC 2 TYR A 234 VAL A 235 -1 O TYR A 234 N VAL A 229 SHEET 1 AD 2 SER A 344 VAL A 347 0 SHEET 2 AD 2 GLY A 365 SER A 368 -1 O GLY A 365 N VAL A 347 SHEET 1 AE 2 GLN A 405 PHE A 406 0 SHEET 2 AE 2 PRO A 413 LEU A 414 -1 O LEU A 414 N GLN A 405 SHEET 1 AF 3 LEU A 544 GLU A 552 0 SHEET 2 AF 3 SER A 496 LEU A 504 -1 O VAL A 497 N LEU A 551 SHEET 3 AF 3 GLN A 590 THR A 596 1 O VAL A 591 N THR A 500 SHEET 1 AG 4 VAL A 531 ALA A 532 0 SHEET 2 AG 4 THR A 512 GLY A 517 -1 O VAL A 515 N VAL A 531 SHEET 3 AG 4 VAL A 556 VAL A 564 -1 O LYS A 560 N ALA A 516 SHEET 4 AG 4 HIS A 578 THR A 581 -1 O HIS A 578 N TYR A 559 SHEET 1 AH 4 VAL A 531 ALA A 532 0 SHEET 2 AH 4 THR A 512 GLY A 517 -1 O VAL A 515 N VAL A 531 SHEET 3 AH 4 VAL A 556 VAL A 564 -1 O LYS A 560 N ALA A 516 SHEET 4 AH 4 VAL A 570 TRP A 572 -1 O THR A 571 N ASN A 563 SSBOND 1 CYS A 19 CYS A 26 1555 1555 2.01 SSBOND 2 CYS A 222 CYS A 453 1555 1555 2.03 SSBOND 3 CYS A 266 CYS A 274 1555 1555 2.05 SSBOND 4 CYS A 491 CYS A 587 1555 1555 2.02 LINK ND2 ASN A 171 C1 NAG B 1 1555 1555 1.45 LINK OG1 THR A 468 C1 MAN A 601 1555 1555 1.45 LINK OG SER A 473 C1 MAN A 609 1555 1555 1.45 LINK OG1 THR A 475 C1 MAN A 602 1555 1555 1.45 LINK OG SER A 482 C1 MAN A 607 1555 1555 1.44 LINK OG1 THR A 493 C1 MAN A 603 1555 1555 1.45 LINK ND2 ASN A 524 C1 NAG A 613 1555 1555 1.45 LINK OG1 THR A 579 C1 MAN A 608 1555 1555 1.45 LINK OG1 THR A 581 C1 MAN A 605 1555 1555 1.45 LINK OG1 THR A 589 C1 MAN A 606 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 CISPEP 1 GLY A 22 PRO A 23 0 5.27 CISPEP 2 ASP A 44 PRO A 45 0 -0.07 CISPEP 3 ARG A 122 PRO A 123 0 -2.06 CISPEP 4 ASP A 575 PRO A 576 0 -4.25 CRYST1 52.185 99.232 121.240 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019163 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010077 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008248 0.00000