HEADER TRANSFERASE 08-FEB-08 2VO4 TITLE GLUTATHIONE TRANSFERASE FROM GLYCINE MAX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2,4-D INDUCIBLE GLUTATHIONE S-TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLUTATHIONE-S-TRANSFERASE, GSTA; COMPND 5 EC: 2.5.1.18 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 ORGANISM_TAXID: 3847 KEYWDS HERBICIDE, GLYCINE MAX, TRANSFERASE, TAU CLASS GST, S-(P-NITROBENZYL- KEYWDS 2 GLUTATHIONE) EXPDTA X-RAY DIFFRACTION AUTHOR I.AXARLI,P.DHAVALA,A.C.PAPAGEORGIOU,N.E.LABROU REVDAT 6 13-DEC-23 2VO4 1 REMARK REVDAT 5 24-JUL-19 2VO4 1 REMARK REVDAT 4 13-JUL-11 2VO4 1 VERSN REVDAT 3 20-JAN-09 2VO4 1 JRNL REMARK REVDAT 2 23-DEC-08 2VO4 1 REMARK REVDAT 1 02-DEC-08 2VO4 0 JRNL AUTH I.AXARLI,P.DHAVALA,A.C.PAPAGEORGIOU,N.E.LABROU JRNL TITL CRYSTALLOGRAPHIC AND FUNCTIONAL CHARACTERIZATION OF THE JRNL TITL 2 FLUORODIFEN-INDUCIBLE GLUTATHIONE TRANSFERASE FROM GLYCINE JRNL TITL 3 MAX REVEALS AN ACTIVE SITE TOPOGRAPHY SUITED FOR JRNL TITL 4 DIPHENYLETHER HERBICIDES AND A NOVEL L-SITE. JRNL REF J.MOL.BIOL. V. 385 984 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19014949 JRNL DOI 10.1016/J.JMB.2008.10.084 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 45117 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2400 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3280 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 174 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3622 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 430 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.379 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3909 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5289 ; 1.634 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 466 ;10.064 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;36.227 ;24.783 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 732 ;15.984 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;17.161 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 548 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2973 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2058 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2669 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 363 ; 0.454 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 112 ; 0.253 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 47 ; 0.274 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2308 ; 0.942 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3644 ; 1.483 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1853 ; 2.411 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1632 ; 3.721 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 219 REMARK 3 RESIDUE RANGE : A 1 A 219 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6605 -23.4754 -5.9035 REMARK 3 T TENSOR REMARK 3 T11: -0.0927 T22: 0.0514 REMARK 3 T33: -0.0676 T12: -0.0196 REMARK 3 T13: -0.0021 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.7422 L22: 0.5281 REMARK 3 L33: 0.4149 L12: -0.1467 REMARK 3 L13: -0.0801 L23: 0.0416 REMARK 3 S TENSOR REMARK 3 S11: -0.0225 S12: -0.2613 S13: 0.0294 REMARK 3 S21: 0.0288 S22: 0.0511 S23: -0.0105 REMARK 3 S31: -0.0109 S32: 0.0167 S33: -0.0286 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VO4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1290035278. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8088 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48045 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 70.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 42.00 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1OYJ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.91500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.68750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.68750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.95750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.68750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.68750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.87250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.68750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.68750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.95750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.68750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.68750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 83.87250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.91500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2104 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2211 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 GOL A 1222 O HOH A 2226 1.60 REMARK 500 NH1 ARG B 92 O HOH B 2132 1.62 REMARK 500 O2 GOL B 1222 O HOH B 2210 1.68 REMARK 500 O HOH A 2154 O HOH A 2157 1.84 REMARK 500 OE1 GLN B 91 O HOH B 2131 1.94 REMARK 500 O HOH B 2118 O HOH B 2121 1.95 REMARK 500 O HOH A 2026 O HOH A 2092 1.99 REMARK 500 O HOH A 2076 O HOH B 2056 2.07 REMARK 500 O HOH B 2153 O HOH B 2154 2.16 REMARK 500 O HOH A 2054 O HOH A 2055 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 2 N - CA - C ANGL. DEV. = -17.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 39 66.84 -155.86 REMARK 500 GLU A 66 112.95 80.31 REMARK 500 ASN A 82 103.77 -7.66 REMARK 500 GLU A 137 -72.23 -6.97 REMARK 500 GLN B 2 -57.43 63.60 REMARK 500 ASN B 39 76.86 -151.28 REMARK 500 GLU B 66 113.14 78.34 REMARK 500 ASN B 82 104.40 -7.23 REMARK 500 LYS B 104 -108.18 -56.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 1 GLN A 2 -117.93 REMARK 500 GLU A 136 GLU A 137 134.33 REMARK 500 MET B 1 GLN B 2 32.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2009 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B2010 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH B2019 DISTANCE = 6.76 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTB A1220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTB B1220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4NM A1221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4NM B1221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1222 DBREF 2VO4 A 1 219 UNP O49235 O49235_SOYBN 1 219 DBREF 2VO4 B 1 219 UNP O49235 O49235_SOYBN 1 219 SEQADV 2VO4 GLN A 2 UNP O49235 SER 2 CONFLICT SEQADV 2VO4 GLN B 2 UNP O49235 SER 2 CONFLICT SEQRES 1 A 219 MET GLN ASP GLU VAL VAL LEU LEU ASP PHE TRP PRO SER SEQRES 2 A 219 PRO PHE GLY MET ARG VAL ARG ILE ALA LEU ALA GLU LYS SEQRES 3 A 219 GLY ILE LYS TYR GLU TYR LYS GLU GLU ASP LEU ARG ASN SEQRES 4 A 219 LYS SER PRO LEU LEU LEU GLN MET ASN PRO VAL HIS LYS SEQRES 5 A 219 LYS ILE PRO VAL LEU ILE HIS ASN GLY LYS PRO ILE CYS SEQRES 6 A 219 GLU SER LEU ILE ALA VAL GLN TYR ILE GLU GLU VAL TRP SEQRES 7 A 219 ASN ASP ARG ASN PRO LEU LEU PRO SER ASP PRO TYR GLN SEQRES 8 A 219 ARG ALA GLN THR ARG PHE TRP ALA ASP TYR VAL ASP LYS SEQRES 9 A 219 LYS ILE TYR ASP LEU GLY ARG LYS ILE TRP THR SER LYS SEQRES 10 A 219 GLY GLU GLU LYS GLU ALA ALA LYS LYS GLU PHE ILE GLU SEQRES 11 A 219 ALA LEU LYS LEU LEU GLU GLU GLN LEU GLY ASP LYS THR SEQRES 12 A 219 TYR PHE GLY GLY ASP ASN LEU GLY PHE VAL ASP ILE ALA SEQRES 13 A 219 LEU VAL PRO PHE TYR THR TRP PHE LYS ALA TYR GLU THR SEQRES 14 A 219 PHE GLY THR LEU ASN ILE GLU SER GLU CYS PRO LYS PHE SEQRES 15 A 219 ILE ALA TRP ALA LYS ARG CYS LEU GLN LYS GLU SER VAL SEQRES 16 A 219 ALA LYS SER LEU PRO ASP GLN GLN LYS VAL TYR GLU PHE SEQRES 17 A 219 ILE MET ASP LEU ARG LYS LYS LEU GLY ILE GLU SEQRES 1 B 219 MET GLN ASP GLU VAL VAL LEU LEU ASP PHE TRP PRO SER SEQRES 2 B 219 PRO PHE GLY MET ARG VAL ARG ILE ALA LEU ALA GLU LYS SEQRES 3 B 219 GLY ILE LYS TYR GLU TYR LYS GLU GLU ASP LEU ARG ASN SEQRES 4 B 219 LYS SER PRO LEU LEU LEU GLN MET ASN PRO VAL HIS LYS SEQRES 5 B 219 LYS ILE PRO VAL LEU ILE HIS ASN GLY LYS PRO ILE CYS SEQRES 6 B 219 GLU SER LEU ILE ALA VAL GLN TYR ILE GLU GLU VAL TRP SEQRES 7 B 219 ASN ASP ARG ASN PRO LEU LEU PRO SER ASP PRO TYR GLN SEQRES 8 B 219 ARG ALA GLN THR ARG PHE TRP ALA ASP TYR VAL ASP LYS SEQRES 9 B 219 LYS ILE TYR ASP LEU GLY ARG LYS ILE TRP THR SER LYS SEQRES 10 B 219 GLY GLU GLU LYS GLU ALA ALA LYS LYS GLU PHE ILE GLU SEQRES 11 B 219 ALA LEU LYS LEU LEU GLU GLU GLN LEU GLY ASP LYS THR SEQRES 12 B 219 TYR PHE GLY GLY ASP ASN LEU GLY PHE VAL ASP ILE ALA SEQRES 13 B 219 LEU VAL PRO PHE TYR THR TRP PHE LYS ALA TYR GLU THR SEQRES 14 B 219 PHE GLY THR LEU ASN ILE GLU SER GLU CYS PRO LYS PHE SEQRES 15 B 219 ILE ALA TRP ALA LYS ARG CYS LEU GLN LYS GLU SER VAL SEQRES 16 B 219 ALA LYS SER LEU PRO ASP GLN GLN LYS VAL TYR GLU PHE SEQRES 17 B 219 ILE MET ASP LEU ARG LYS LYS LEU GLY ILE GLU HET GTB A1220 30 HET 4NM A1221 11 HET GOL A1222 6 HET GTB B1220 30 HET 4NM B1221 11 HET GOL B1222 6 HETNAM GTB S-(P-NITROBENZYL)GLUTATHIONE HETNAM 4NM 4-NITROPHENYL METHANETHIOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GTB 2(C17 H22 N4 O8 S) FORMUL 4 4NM 2(C7 H8 N O2 S 1+) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 9 HOH *430(H2 O) HELIX 1 1 SER A 13 LYS A 26 1 14 HELIX 2 2 SER A 41 ASN A 48 1 8 HELIX 3 3 GLU A 66 TRP A 78 1 13 HELIX 4 4 ASP A 88 SER A 116 1 29 HELIX 5 5 LYS A 117 GLY A 140 1 24 HELIX 6 6 GLY A 151 THR A 162 1 12 HELIX 7 7 TRP A 163 GLY A 171 1 9 HELIX 8 8 ASN A 174 CYS A 179 1 6 HELIX 9 9 CYS A 179 GLN A 191 1 13 HELIX 10 10 LYS A 192 LYS A 197 1 6 HELIX 11 11 ASP A 201 LEU A 212 1 12 HELIX 12 12 LEU A 212 GLY A 217 1 6 HELIX 13 13 SER B 13 LYS B 26 1 14 HELIX 14 14 SER B 41 ASN B 48 1 8 HELIX 15 15 GLU B 66 TRP B 78 1 13 HELIX 16 16 ASP B 88 SER B 116 1 29 HELIX 17 17 LYS B 117 GLY B 140 1 24 HELIX 18 18 GLY B 151 THR B 162 1 12 HELIX 19 19 TRP B 163 GLY B 171 1 9 HELIX 20 20 ASN B 174 CYS B 179 1 6 HELIX 21 21 CYS B 179 LYS B 192 1 14 HELIX 22 22 LYS B 192 LYS B 197 1 6 HELIX 23 23 ASP B 201 LEU B 212 1 12 HELIX 24 24 LEU B 212 GLY B 217 1 6 SHEET 1 AA 4 GLU A 31 GLU A 34 0 SHEET 2 AA 4 VAL A 5 ASP A 9 1 O VAL A 5 N GLU A 31 SHEET 3 AA 4 VAL A 56 HIS A 59 -1 O VAL A 56 N LEU A 8 SHEET 4 AA 4 LYS A 62 CYS A 65 -1 O LYS A 62 N HIS A 59 SHEET 1 BA 4 GLU B 31 GLU B 34 0 SHEET 2 BA 4 VAL B 5 ASP B 9 1 O VAL B 5 N GLU B 31 SHEET 3 BA 4 VAL B 56 HIS B 59 -1 O VAL B 56 N LEU B 8 SHEET 4 BA 4 LYS B 62 CYS B 65 -1 O LYS B 62 N HIS B 59 CISPEP 1 ILE A 54 PRO A 55 0 0.23 CISPEP 2 ILE A 218 GLU A 219 0 14.40 CISPEP 3 ILE B 54 PRO B 55 0 -1.25 CISPEP 4 ILE B 218 GLU B 219 0 -14.42 SITE 1 AC1 19 SER A 13 PHE A 15 LEU A 37 LYS A 40 SITE 2 AC1 19 LYS A 53 ILE A 54 PRO A 55 GLU A 66 SITE 3 AC1 19 SER A 67 TYR A 107 ARG A 111 LEU A 212 SITE 4 AC1 19 LYS A 215 LEU A 216 HOH A2080 HOH A2220 SITE 5 AC1 19 HOH A2221 HOH A2223 HOH A2224 SITE 1 AC2 20 SER B 13 PHE B 15 LEU B 37 LYS B 40 SITE 2 AC2 20 LYS B 53 ILE B 54 PRO B 55 GLU B 66 SITE 3 AC2 20 SER B 67 TYR B 107 LEU B 212 LYS B 215 SITE 4 AC2 20 LEU B 216 HOH B2081 HOH B2095 HOH B2142 SITE 5 AC2 20 HOH B2203 HOH B2204 HOH B2207 HOH B2208 SITE 1 AC3 7 TRP A 11 ARG A 20 TYR A 32 LYS A 197 SITE 2 AC3 7 SER A 198 LEU A 199 PRO A 200 SITE 1 AC4 9 TRP B 11 ARG B 20 TYR B 30 TYR B 32 SITE 2 AC4 9 LYS B 197 SER B 198 LEU B 199 PRO B 200 SITE 3 AC4 9 HOH B2009 SITE 1 AC5 6 ASP A 3 VAL A 77 TRP A 78 ASP A 80 SITE 2 AC5 6 HOH A2226 HOH A2227 SITE 1 AC6 6 VAL B 77 ASN B 79 ASP B 80 HOH B2107 SITE 2 AC6 6 HOH B2210 HOH B2211 CRYST1 91.375 91.375 111.830 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010944 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010944 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008942 0.00000