HEADER ELECTRON TRANSPORT 13-FEB-08 2VOC TITLE THIOREDOXIN A ACTIVE SITE MUTANTS FORM MIXED DISULFIDE DIMERS THAT TITLE 2 RESEMBLE ENZYME-SUBSTRATE REACTION INTERMEDIATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRX, THIOREDOXIN A; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: HOMODIMER THROUGH RESIDUE C29 DISULFIDE BOND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 668369; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-26B KEYWDS THIOREDOXIN, THIOREDOXIN FOLD, ELECTRON TRANSPORT, BACILLUS, KEYWDS 2 HOMODIMER, DISULFIDE, TRANSPORT, REDOX-ACTIVE CENTER EXPDTA X-RAY DIFFRACTION AUTHOR T.R.H.M.KOUWEN,J.ANDRELL,R.SCHRIJVER,J.Y.F.DUBOIS,M.J.MAHER,S.IWATA, AUTHOR 2 E.P.CARPENTER,J.M.VAN DIJL REVDAT 4 13-DEC-23 2VOC 1 REMARK REVDAT 3 28-FEB-18 2VOC 1 SOURCE JRNL ATOM REVDAT 2 13-JUL-11 2VOC 1 VERSN REVDAT 1 10-MAR-09 2VOC 0 JRNL AUTH T.R.KOUWEN,J.ANDRELL,R.SCHRIJVER,J.Y.DUBOIS,M.J.MAHER, JRNL AUTH 2 S.IWATA,E.P.CARPENTER,J.M.VAN DIJL JRNL TITL THIOREDOXIN A ACTIVE-SITE MUTANTS FORM MIXED DISULFIDE JRNL TITL 2 DIMERS THAT RESEMBLE ENZYME-SUBSTRATE REACTION JRNL TITL 3 INTERMEDIATES. JRNL REF J. MOL. BIOL. V. 379 520 2008 JRNL REFN ESSN 1089-8638 JRNL PMID 18455736 JRNL DOI 10.1016/J.JMB.2008.03.077 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1570 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2026 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1629 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 254 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.57000 REMARK 3 B22 (A**2) : -0.46000 REMARK 3 B33 (A**2) : -0.44000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : -0.59000 REMARK 3 B23 (A**2) : -0.97000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.954 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1740 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2374 ; 2.048 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 228 ; 6.819 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ;34.289 ;27.183 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 306 ;14.098 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 275 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1294 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 808 ; 0.259 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1200 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 216 ; 0.198 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.164 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.172 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1130 ; 1.327 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1793 ; 1.963 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 687 ; 3.088 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 578 ; 4.667 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): 26.8627 2.9459 33.9136 REMARK 3 T TENSOR REMARK 3 T11: 0.0809 T22: 0.0907 REMARK 3 T33: 0.0804 T12: -0.0041 REMARK 3 T13: -0.0064 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.8682 L22: 1.3844 REMARK 3 L33: 1.1708 L12: -0.1462 REMARK 3 L13: -0.1061 L23: 0.5135 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: 0.0954 S13: 0.0432 REMARK 3 S21: -0.1384 S22: -0.0111 S23: -0.0261 REMARK 3 S31: -0.0980 S32: -0.0007 S33: -0.0090 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 105 REMARK 3 ORIGIN FOR THE GROUP (A): 38.5454 26.3410 51.9314 REMARK 3 T TENSOR REMARK 3 T11: 0.0836 T22: 0.0792 REMARK 3 T33: 0.0717 T12: 0.0065 REMARK 3 T13: 0.0011 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.9379 L22: 1.2524 REMARK 3 L33: 1.0373 L12: 0.2738 REMARK 3 L13: 0.1960 L23: 0.1463 REMARK 3 S TENSOR REMARK 3 S11: 0.0011 S12: -0.0155 S13: -0.0923 REMARK 3 S21: 0.0211 S22: 0.0018 S23: -0.1133 REMARK 3 S31: 0.0705 S32: 0.0989 S33: -0.0030 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIDE-CHAIN ATOMS FOR WHICH THERE WERE REMARK 3 NO ELECTRON DENSITY WERE DELETED FROM THE COORDINATE FILE. REMARK 4 REMARK 4 2VOC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1290035323. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31147 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: POLYSERINE MODEL OF PDB ENTRY 2TRX REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 7.8, 0.1 M MAGNESIUM REMARK 280 CHLORIDE, 4% ACETONITRILE, 35% PEG 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 32 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN B, CYS 32 TO SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 112 REMARK 465 MET B 1 REMARK 465 GLU B 106 REMARK 465 HIS B 107 REMARK 465 HIS B 108 REMARK 465 HIS B 109 REMARK 465 HIS B 110 REMARK 465 HIS B 111 REMARK 465 HIS B 112 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CE NZ REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 GLN A 44 CG CD OE1 NE2 REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 LYS A 91 CE NZ REMARK 470 LYS A 93 CE NZ REMARK 470 LYS B 66 CE NZ REMARK 470 LYS B 93 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 48 O HOH A 2065 1.96 REMARK 500 O ALA B 2 O HOH B 2001 2.14 REMARK 500 NE2 GLN A 9 O HOH A 2018 2.15 REMARK 500 OD2 ASP A 48 O HOH A 2066 2.16 REMARK 500 OD2 ASP B 58 O HOH B 2068 2.18 REMARK 500 OD2 ASP A 8 O HOH A 2012 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY B 30 N GLY B 30 CA 0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 31 C - N - CA ANGL. DEV. = 15.8 DEGREES REMARK 500 PRO A 31 C - N - CD ANGL. DEV. = -13.3 DEGREES REMARK 500 LEU A 75 CB - CG - CD2 ANGL. DEV. = -10.7 DEGREES REMARK 500 LEU B 99 CB - CG - CD1 ANGL. DEV. = -10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET B 46 28.43 -148.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2043 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH B2044 DISTANCE = 6.28 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1112 DBREF 2VOC A 1 104 UNP P14949 THIO_BACSU 1 104 DBREF 2VOC A 105 112 PDB 2VOC 2VOC 105 112 DBREF 2VOC B 1 104 UNP P14949 THIO_BACSU 1 104 DBREF 2VOC B 105 112 PDB 2VOC 2VOC 105 112 SEQADV 2VOC SER A 32 UNP P14949 CYS 32 ENGINEERED MUTATION SEQADV 2VOC SER B 32 UNP P14949 CYS 32 ENGINEERED MUTATION SEQRES 1 A 112 MET ALA ILE VAL LYS ALA THR ASP GLN SER PHE SER ALA SEQRES 2 A 112 GLU THR SER GLU GLY VAL VAL LEU ALA ASP PHE TRP ALA SEQRES 3 A 112 PRO TRP CYS GLY PRO SER LYS MET ILE ALA PRO VAL LEU SEQRES 4 A 112 GLU GLU LEU ASP GLN GLU MET GLY ASP LYS LEU LYS ILE SEQRES 5 A 112 VAL LYS ILE ASP VAL ASP GLU ASN GLN GLU THR ALA GLY SEQRES 6 A 112 LYS TYR GLY VAL MET SER ILE PRO THR LEU LEU VAL LEU SEQRES 7 A 112 LYS ASP GLY GLU VAL VAL GLU THR SER VAL GLY PHE LYS SEQRES 8 A 112 PRO LYS GLU ALA LEU GLN GLU LEU VAL ASN LYS HIS LEU SEQRES 9 A 112 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 112 MET ALA ILE VAL LYS ALA THR ASP GLN SER PHE SER ALA SEQRES 2 B 112 GLU THR SER GLU GLY VAL VAL LEU ALA ASP PHE TRP ALA SEQRES 3 B 112 PRO TRP CYS GLY PRO SER LYS MET ILE ALA PRO VAL LEU SEQRES 4 B 112 GLU GLU LEU ASP GLN GLU MET GLY ASP LYS LEU LYS ILE SEQRES 5 B 112 VAL LYS ILE ASP VAL ASP GLU ASN GLN GLU THR ALA GLY SEQRES 6 B 112 LYS TYR GLY VAL MET SER ILE PRO THR LEU LEU VAL LEU SEQRES 7 B 112 LYS ASP GLY GLU VAL VAL GLU THR SER VAL GLY PHE LYS SEQRES 8 B 112 PRO LYS GLU ALA LEU GLN GLU LEU VAL ASN LYS HIS LEU SEQRES 9 B 112 LEU GLU HIS HIS HIS HIS HIS HIS HET PEG A1112 7 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 PEG C4 H10 O3 FORMUL 4 HOH *254(H2 O) HELIX 1 1 SER A 10 SER A 16 1 7 HELIX 2 2 GLY A 30 LYS A 33 5 4 HELIX 3 3 MET A 34 GLY A 47 1 14 HELIX 4 4 GLU A 62 TYR A 67 1 6 HELIX 5 5 PRO A 92 LYS A 102 1 11 HELIX 6 6 SER B 10 THR B 15 1 6 HELIX 7 7 CYS B 29 MET B 34 1 6 HELIX 8 8 MET B 34 GLY B 47 1 14 HELIX 9 9 ASN B 60 TYR B 67 1 8 HELIX 10 10 PRO B 92 LYS B 102 1 11 SHEET 1 AA 5 VAL A 4 LYS A 5 0 SHEET 2 AA 5 LYS A 51 ASP A 56 1 O ILE A 52 N VAL A 4 SHEET 3 AA 5 VAL A 19 TRP A 25 1 O VAL A 19 N LYS A 51 SHEET 4 AA 5 THR A 74 LYS A 79 -1 O THR A 74 N PHE A 24 SHEET 5 AA 5 GLU A 82 VAL A 88 -1 O GLU A 82 N LYS A 79 SHEET 1 BA 5 VAL B 4 LYS B 5 0 SHEET 2 BA 5 LYS B 51 ASP B 56 1 O ILE B 52 N VAL B 4 SHEET 3 BA 5 VAL B 19 TRP B 25 1 O VAL B 19 N LYS B 51 SHEET 4 BA 5 THR B 74 LYS B 79 -1 O THR B 74 N PHE B 24 SHEET 5 BA 5 GLU B 82 VAL B 88 -1 O GLU B 82 N LYS B 79 SSBOND 1 CYS A 29 CYS B 29 1555 1555 2.15 CISPEP 1 ILE A 72 PRO A 73 0 1.83 CISPEP 2 ILE B 72 PRO B 73 0 -1.19 SITE 1 AC1 6 GLY A 65 LYS A 66 TYR A 67 GLY A 68 SITE 2 AC1 6 LYS B 66 TYR B 67 CRYST1 36.765 38.395 41.878 83.33 66.62 78.08 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027200 -0.005742 -0.011549 0.00000 SCALE2 0.000000 0.026619 -0.001014 0.00000 SCALE3 0.000000 0.000000 0.026034 0.00000