HEADER METAL BINDING PROTEIN 22-FEB-08 2VOX TITLE AN OXIDIZED TRYPTOPHAN FACILITATES COPPER-BINDING IN METHYLOCOCCUS TITLE 2 CAPSULATUS SECRETED PROTEIN MOPE. THE STRUCTURE OF MERCURY SOAKED TITLE 3 MOPE TO 1.9AA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SURFACE-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 205-540; COMPND 5 SYNONYM: MOPE; COMPND 6 OTHER_DETAILS: OXIDIZED TRYPTOPHAN AT POSITION A130 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOCOCCUS CAPSULATUS; SOURCE 3 ORGANISM_TAXID: 243233; SOURCE 4 STRAIN: BATH, NCIMB 11132; SOURCE 5 OTHER_DETAILS: UNIVERSITY OF WARWICK CULTURE COLLECTION KEYWDS METAL-BINDING PROTEIN, OXIDIZED TRYPTOPHAN, METHANOTROPH BACTERIUM, KEYWDS 2 KUNURENINE, COPPER HOMEOSTASIS, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.HELLAND,A.FJELLBIRKELAND,O.A.KARLSEN,T.VE,J.R.LILLEHAUG,H.B.JENSEN REVDAT 5 06-NOV-24 2VOX 1 REMARK LINK REVDAT 4 17-APR-13 2VOX 1 TITLE KEYWDS REMARK VERSN REVDAT 4 2 1 HETNAM HETSYN FORMUL REVDAT 3 24-FEB-09 2VOX 1 VERSN REVDAT 2 20-MAY-08 2VOX 1 JRNL REVDAT 1 18-MAR-08 2VOX 0 JRNL AUTH R.HELLAND,A.FJELLBIRKELAND,O.A.KARLSEN,T.VE,J.R.LILLEHAUG, JRNL AUTH 2 H.B.JENSEN JRNL TITL AN OXIDIZED TRYPTOPHAN FACILITATES COPPER BINDING IN JRNL TITL 2 METHYLOCOCCUS CAPSULATUS-SECRETED PROTEIN MOPE. JRNL REF J.BIOL.CHEM. V. 283 13897 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18348978 JRNL DOI 10.1074/JBC.M800340200 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0021 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 26101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1377 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1921 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2234 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.30000 REMARK 3 B22 (A**2) : -1.38000 REMARK 3 B33 (A**2) : -1.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.99000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.157 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.099 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2308 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3162 ; 2.347 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 290 ; 8.262 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;36.441 ;24.783 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 337 ;16.154 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;18.786 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 339 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1792 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 990 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1524 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 100 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.162 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.350 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1486 ; 1.318 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2340 ; 2.055 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 987 ; 2.694 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 821 ; 3.569 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. TRYPTOPHAN 130 IS POST-TRANSLATIONALLY OXIDIZED TO REMARK 3 KYNURENINE RESIDUES 1-46 WERE NOT OBSERVED IN ELECTRON DENSITY REMARK 4 REMARK 4 2VOX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1290035424. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0085 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27480 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 41.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 36-45% AMMONIUM SULPHATE, 0.1 M REMARK 280 BISTRIS PH 7.0-7.75 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 32.96950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.64100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 32.96950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 50.64100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 LEU A 2 REMARK 465 ASP A 3 REMARK 465 THR A 4 REMARK 465 LEU A 5 REMARK 465 ASP A 6 REMARK 465 ARG A 7 REMARK 465 ASP A 8 REMARK 465 GLY A 9 REMARK 465 ASP A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 THR A 13 REMARK 465 ALA A 14 REMARK 465 ASP A 15 REMARK 465 ALA A 16 REMARK 465 ASP A 17 REMARK 465 CYS A 18 REMARK 465 ASN A 19 REMARK 465 ASP A 20 REMARK 465 PHE A 21 REMARK 465 ALA A 22 REMARK 465 PRO A 23 REMARK 465 THR A 24 REMARK 465 ILE A 25 REMARK 465 HIS A 26 REMARK 465 PRO A 27 REMARK 465 GLY A 28 REMARK 465 ALA A 29 REMARK 465 ALA A 30 REMARK 465 GLU A 31 REMARK 465 ALA A 32 REMARK 465 THR A 33 REMARK 465 LEU A 34 REMARK 465 ASP A 35 REMARK 465 GLY A 36 REMARK 465 VAL A 37 REMARK 465 ASP A 38 REMARK 465 SER A 39 REMARK 465 ASN A 40 REMARK 465 CYS A 41 REMARK 465 ASP A 42 REMARK 465 GLY A 43 REMARK 465 ARG A 44 REMARK 465 ASP A 45 REMARK 465 SER A 46 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C GLY A 75 CD PRO A 76 1.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 124 NE2 GLN A 124 2555 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 76 C - N - CA ANGL. DEV. = 55.0 DEGREES REMARK 500 PRO A 76 C - N - CD ANGL. DEV. = -51.7 DEGREES REMARK 500 PRO A 76 CA - N - CD ANGL. DEV. = -9.0 DEGREES REMARK 500 LEU A 213 CB - CG - CD1 ANGL. DEV. = 11.0 DEGREES REMARK 500 LEU A 270 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 61 56.70 -102.25 REMARK 500 PRO A 74 86.75 -50.88 REMARK 500 PRO A 76 88.70 92.29 REMARK 500 THR A 78 106.67 71.83 REMARK 500 TYR A 90 179.91 68.25 REMARK 500 ASP A 196 36.60 71.41 REMARK 500 HIS A 208 51.30 -143.93 REMARK 500 ASP A 221 43.15 -103.88 REMARK 500 ASP A 229 89.99 -67.94 REMARK 500 ILE A 261 90.86 -57.43 REMARK 500 TRP A 320 79.82 -159.91 REMARK 500 GLU A 321 64.38 -100.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 KYNURENINE (KYN): TRYPTOPHAN 130 IS POST-TRANSLATIONALLY REMARK 600 OXIDIZED TO KYNURENINE REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1338 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 132 ND1 REMARK 620 2 HIS A 203 ND1 100.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1337 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 250 OD1 REMARK 620 2 ASP A 252 OD2 89.3 REMARK 620 3 ASP A 274 OD1 164.2 75.5 REMARK 620 4 THR A 276 O 88.9 94.4 88.2 REMARK 620 5 ALA A 279 O 85.3 169.1 110.4 94.9 REMARK 620 6 HOH A2022 O 91.8 86.3 91.3 179.0 84.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A1339 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 327 SG REMARK 620 2 HOH A2010 O 97.6 REMARK 620 N 1 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 1338 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 1339 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VOV RELATED DB: PDB REMARK 900 AN OXIDIZED TRYPTOPHAN FACILITATES COPPER- BINDING IN METHYLOCOCCUS REMARK 900 CAPSULATUS SECRETED PROTEIN MOPE. THE STRUCTURE OF WILD-TYPE MOPE REMARK 900 TO 1.35AA REMARK 900 RELATED ID: 2VOW RELATED DB: PDB REMARK 900 AN OXIDIZED TRYPTOPHAN FACILITATES COPPER- BINDING IN METHYLOCOCCUS REMARK 900 CAPSULATUS SECRETED PROTEIN MOPE. THE STRUCTURE OF RECOMBINANT MOPE REMARK 900 TO 1.65AA REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PURIFIED MOPE REPRESENTS THE 336 C-TERMINAL RESIDUES REMARK 999 OF THE SEQUENCE. THE 46 N-TERMINAL RESIDUES OF THE REMARK 999 PURIFIED MOPE IS NOT VISIBLE IN ELECTRON DENSITY. DBREF 2VOX A 1 336 UNP Q9AIP9 Q9AIP9_METCA 205 540 SEQRES 1 A 336 GLY LEU ASP THR LEU ASP ARG ASP GLY ASP GLY SER THR SEQRES 2 A 336 ALA ASP ALA ASP CYS ASN ASP PHE ALA PRO THR ILE HIS SEQRES 3 A 336 PRO GLY ALA ALA GLU ALA THR LEU ASP GLY VAL ASP SER SEQRES 4 A 336 ASN CYS ASP GLY ARG ASP SER GLY VAL ALA GLU VAL VAL SEQRES 5 A 336 GLU THR PHE LYS ASN PRO GLY THR TYR SER SER PRO VAL SEQRES 6 A 336 ILE ASN PHE LYS ILE ALA SER PRO PRO GLY PRO GLY THR SEQRES 7 A 336 PRO ILE TYR GLY PRO PRO ARG ASP PHE SER GLY TYR ASN SEQRES 8 A 336 LYS SER TYR SER LEU ALA ILE GLY LYS THR SER TYR TYR SEQRES 9 A 336 ASP PRO THR THR GLY THR LYS TRP ASN ASP ASP THR ILE SEQRES 10 A 336 THR PRO VAL SER ASP GLY GLN ASP ILE TRP ARG GLY KYN SEQRES 11 A 336 THR HIS THR GLY LYS TRP SER PHE PHE ASN GLY LYS ALA SEQRES 12 A 336 GLY ASP LYS ILE THR LEU SER VAL GLN ARG ASP ALA GLN SEQRES 13 A 336 GLU ALA SER LEU LYS GLY ALA HIS PRO GLY PHE ILE LEU SEQRES 14 A 336 PHE TRP ARG PRO GLU GLY GLY PRO LEU PHE TRP ALA GLY SEQRES 15 A 336 THR GLN ASP LEU ASP GLU GLY GLN THR ALA LEU PRO ALA SEQRES 16 A 336 ASP SER ASP THR VAL ILE GLY HIS VAL ILE VAL GLN HIS SEQRES 17 A 336 ALA ASP TRP THR LEU GLN GLY LEU PRO PRO LYS ALA ASP SEQRES 18 A 336 HIS THR ALA PRO ALA GLY VAL ASP THR GLU LEU TYR PRO SEQRES 19 A 336 MET LYS PRO ASP SER TYR THR MET TYR TYR VAL ASP SER SEQRES 20 A 336 GLY TYR ASP ALA ASP LYS TYR VAL ALA SER LYS LYS LEU SEQRES 21 A 336 ILE MET HIS PRO THR ALA PHE LYS GLY LEU ALA LEU ASN SEQRES 22 A 336 ASP GLY THR ALA GLY ALA PHE THR LYS SER ILE THR LEU SEQRES 23 A 336 PRO LYS THR GLY TYR TYR MET LEU TYR VAL ALA ASN VAL SEQRES 24 A 336 LEU GLU VAL ASP ASP TRP SER VAL ASP ALA ASP GLY LYS SEQRES 25 A 336 LEU THR THR THR GLY GLU VAL TRP GLU VAL PRO ALA LYS SEQRES 26 A 336 GLY CYS TRP VAL ASN ILE THR ILE SER LYS PRO MODRES 2VOX KYN A 130 TRP HET KYN A 130 14 HET CA A1337 1 HET CU A1338 1 HET HG A1339 1 HETNAM KYN (2S)-2-AMINO-4-(2-AMINOPHENYL)-4-OXOBUTANOIC ACID HETNAM CA CALCIUM ION HETNAM CU COPPER (II) ION HETNAM HG MERCURY (II) ION HETSYN KYN L-KYNURENINE FORMUL 1 KYN C10 H12 N2 O3 FORMUL 2 CA CA 2+ FORMUL 3 CU CU 2+ FORMUL 4 HG HG 2+ FORMUL 5 HOH *26(H2 O) HELIX 1 1 ASP A 105 GLY A 109 5 5 HELIX 2 2 PRO A 119 GLN A 124 5 6 HELIX 3 3 ALA A 155 ALA A 158 5 4 HELIX 4 4 PHE A 267 GLY A 269 5 3 SHEET 1 AA 6 ALA A 49 THR A 54 0 SHEET 2 AA 6 ALA A 209 GLN A 214 1 O ASP A 210 N VAL A 51 SHEET 3 AA 6 SER A 239 ASP A 250 -1 O TYR A 240 N LEU A 213 SHEET 4 AA 6 PRO A 165 ARG A 172 -1 O PRO A 165 N ASP A 250 SHEET 5 AA 6 GLY A 290 ASN A 298 -1 O TYR A 291 N ARG A 172 SHEET 6 AA 6 LYS A 135 GLY A 141 -1 O LYS A 135 N VAL A 296 SHEET 1 AB 4 ALA A 49 THR A 54 0 SHEET 2 AB 4 ALA A 209 GLN A 214 1 O ASP A 210 N VAL A 51 SHEET 3 AB 4 SER A 239 ASP A 250 -1 O TYR A 240 N LEU A 213 SHEET 4 AB 4 ALA A 271 LEU A 272 1 N LEU A 272 O TYR A 249 SHEET 1 AC 2 VAL A 65 ASN A 67 0 SHEET 2 AC 2 SER A 197 THR A 199 -1 O ASP A 198 N ILE A 66 SHEET 1 AD 4 LYS A 92 ALA A 97 0 SHEET 2 AD 4 TRP A 328 SER A 334 -1 O VAL A 329 N LEU A 96 SHEET 3 AD 4 LYS A 146 ARG A 153 -1 O THR A 148 N SER A 334 SHEET 4 AD 4 PHE A 280 THR A 285 -1 O PHE A 280 N VAL A 151 SHEET 1 AE 2 LYS A 111 TRP A 112 0 SHEET 2 AE 2 ILE A 126 TRP A 127 -1 O ILE A 126 N TRP A 112 SHEET 1 AF 2 LYS A 259 LEU A 260 0 SHEET 2 AF 2 GLU A 301 VAL A 302 -1 O VAL A 302 N LYS A 259 SHEET 1 AG 2 ASP A 304 VAL A 307 0 SHEET 2 AG 2 LEU A 313 THR A 316 -1 O THR A 314 N SER A 306 LINK C GLY A 129 N KYN A 130 1555 1555 1.33 LINK C KYN A 130 N THR A 131 1555 1555 1.32 LINK ND1 HIS A 132 CU CU A1338 1555 1555 2.07 LINK ND1 HIS A 203 CU CU A1338 1555 1555 2.34 LINK OD1 ASP A 250 CA CA A1337 1555 1555 2.52 LINK OD2 ASP A 252 CA CA A1337 1555 1555 2.29 LINK OD1 ASP A 274 CA CA A1337 1555 1555 2.44 LINK O THR A 276 CA CA A1337 1555 1555 2.32 LINK O ALA A 279 CA CA A1337 1555 1555 2.37 LINK SG CYS A 327 HG HG A1339 1555 1555 2.56 LINK CA CA A1337 O HOH A2022 1555 1555 2.30 LINK HG HG A1339 O HOH A2010 1555 1555 3.01 CISPEP 1 GLY A 47 VAL A 48 0 11.32 CISPEP 2 ASN A 57 PRO A 58 0 -10.43 CISPEP 3 PRO A 76 GLY A 77 0 4.63 CISPEP 4 THR A 118 PRO A 119 0 -1.85 CISPEP 5 LYS A 335 PRO A 336 0 -7.11 SITE 1 AC1 6 ASP A 250 ASP A 252 ASP A 274 THR A 276 SITE 2 AC1 6 ALA A 279 HOH A2022 SITE 1 AC2 3 KYN A 130 HIS A 132 HIS A 203 SITE 1 AC3 3 VAL A 322 CYS A 327 HOH A2010 CRYST1 65.939 101.282 54.816 90.00 98.32 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015166 0.000000 0.002218 0.00000 SCALE2 0.000000 0.009873 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018437 0.00000