HEADER HYDROLASE 29-FEB-08 2VPH TITLE CRYSTAL STRUCTURE OF THE HUMAN PROTEIN TYROSINE PHOSPHATASE, NON- TITLE 2 RECEPTOR TYPE 4, PDZ DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PDZ DOMAIN, RESIDUES 513-606; COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE MEG1, PTPASE-MEG1, MEG; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-ROSETTA-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS PROTEIN PHOSPHATASE, PTPN4, PTPMEG, HYDROLASE, CYTOSKELETON, KEYWDS 2 MEGAKARYOCYTE, DEPHOSPHORYLATION, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.K.ROOS,J.WANG,N.BURGESS-BROWN,J.M.ELKINS,K.KAVANAGH,A.C.W.PIKE, AUTHOR 2 P.FILIPPAKOPOULOS,C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS,F.VON DELFT, AUTHOR 3 C.BOUNTRA,S.KNAPP REVDAT 5 13-DEC-23 2VPH 1 REMARK REVDAT 4 24-JAN-18 2VPH 1 JRNL REVDAT 3 13-JUL-11 2VPH 1 VERSN REVDAT 2 24-FEB-09 2VPH 1 VERSN REVDAT 1 18-MAR-08 2VPH 0 JRNL AUTH A.K.ROOS,J.WANG,N.BURGESS-BROWN,J.M.ELKINS,K.KAVANAGH, JRNL AUTH 2 A.C.W.PIKE,P.FILIPPAKOPOULOS,C.H.ARROWSMITH,J.WEIGELT, JRNL AUTH 3 A.EDWARDS,F.VON DELFT,C.BOUNTRA,S.KNAPP JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN PROTEIN TYROSINE PHOSPHATASE, JRNL TITL 2 NON-RECEPTOR TYPE 4, PDZ DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14492 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 765 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1059 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1424 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 30.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.56000 REMARK 3 B22 (A**2) : -0.90000 REMARK 3 B33 (A**2) : -0.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.169 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.694 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1444 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 949 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1963 ; 1.448 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2327 ; 0.921 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 186 ; 6.414 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 63 ;32.526 ;24.603 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 233 ;11.308 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;20.304 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 234 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1619 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 264 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 945 ; 2.861 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1522 ; 4.235 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 499 ; 5.889 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 441 ; 8.366 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 515 A 554 5 REMARK 3 1 B 515 B 554 5 REMARK 3 2 A 556 A 588 5 REMARK 3 2 B 556 B 588 5 REMARK 3 3 A 596 A 607 5 REMARK 3 3 B 596 B 607 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 491 ; 0.15 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 491 ; 0.15 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 547 ; 0.21 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 547 ; 0.21 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 491 ; 1.19 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 491 ; 1.19 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 547 ; 1.15 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 547 ; 1.15 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 513 A 610 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7358 19.5704 17.6481 REMARK 3 T TENSOR REMARK 3 T11: -0.0746 T22: -0.1158 REMARK 3 T33: -0.0733 T12: 0.0159 REMARK 3 T13: -0.0276 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 2.0290 L22: 2.7036 REMARK 3 L33: 4.4266 L12: -0.6362 REMARK 3 L13: 0.5409 L23: -1.2290 REMARK 3 S TENSOR REMARK 3 S11: 0.0713 S12: -0.0628 S13: -0.0143 REMARK 3 S21: 0.0590 S22: 0.1484 S23: 0.1132 REMARK 3 S31: 0.0690 S32: -0.1328 S33: -0.2197 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 513 B 610 REMARK 3 ORIGIN FOR THE GROUP (A): 7.8947 33.9617 -2.0656 REMARK 3 T TENSOR REMARK 3 T11: -0.0635 T22: -0.0629 REMARK 3 T33: -0.0511 T12: -0.0025 REMARK 3 T13: -0.0297 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 1.5754 L22: 2.7018 REMARK 3 L33: 6.7214 L12: 1.0127 REMARK 3 L13: 0.4598 L23: 1.1253 REMARK 3 S TENSOR REMARK 3 S11: -0.0625 S12: 0.0607 S13: 0.0648 REMARK 3 S21: -0.0199 S22: -0.0154 S23: 0.1460 REMARK 3 S31: 0.0812 S32: -0.5197 S33: 0.0778 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VPH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1290035498. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98068 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15306 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2OCS, 2HE2, 1QAV REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.20M (NH4)2H(CIT), PH 5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.24450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.79900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.50750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.79900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.24450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.50750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 SER B -1 REMARK 465 GLU B 524 REMARK 465 CYS B 590 REMARK 465 GLU B 591 REMARK 465 ARG B 592 REMARK 465 HIS B 593 REMARK 465 SER B 594 REMARK 465 GLY B 595 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 524 CG CD OE1 OE2 REMARK 470 LYS A 539 CG CD CE NZ REMARK 470 SER A 589 OG REMARK 470 CYS A 590 SG REMARK 470 HIS A 593 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 594 OG REMARK 470 ARG B 519 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 521 CG CD CE NZ REMARK 470 ARG B 527 NE CZ NH1 NH2 REMARK 470 LYS B 539 CG CD CE NZ REMARK 470 VAL B 557 CG1 CG2 REMARK 470 GLU B 596 CG CD OE1 OE2 REMARK 470 MET B 598 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 514 52.03 -141.89 REMARK 500 ASP A 523 -174.88 -69.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CS5 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF PDZ DOMAIN OF PROTEIN TYROSINEPHOSPHATASE, REMARK 900 NON-RECEPTOR TYPE 4 DBREF 2VPH A -1 0 PDB 2VPH 2VPH -1 0 DBREF 2VPH A 513 606 UNP P29074 PTN4_HUMAN 513 606 DBREF 2VPH A 607 610 PDB 2VPH 2VPH 607 610 DBREF 2VPH B -1 0 PDB 2VPH 2VPH -1 0 DBREF 2VPH B 513 606 UNP P29074 PTN4_HUMAN 513 606 DBREF 2VPH B 607 610 PDB 2VPH 2VPH 607 610 SEQRES 1 A 100 SER MET ASP ASN LEU VAL LEU ILE ARG MET LYS PRO ASP SEQRES 2 A 100 GLU ASN GLY ARG PHE GLY PHE ASN VAL LYS GLY GLY TYR SEQRES 3 A 100 ASP GLN LYS MET PRO VAL ILE VAL SER ARG VAL ALA PRO SEQRES 4 A 100 GLY THR PRO ALA ASP LEU CYS VAL PRO ARG LEU ASN GLU SEQRES 5 A 100 GLY ASP GLN VAL VAL LEU ILE ASN GLY ARG ASP ILE ALA SEQRES 6 A 100 GLU HIS THR HIS ASP GLN VAL VAL LEU PHE ILE LYS ALA SEQRES 7 A 100 SER CYS GLU ARG HIS SER GLY GLU LEU MET LEU LEU VAL SEQRES 8 A 100 ARG PRO ASN ALA VAL GLU SER THR VAL SEQRES 1 B 100 SER MET ASP ASN LEU VAL LEU ILE ARG MET LYS PRO ASP SEQRES 2 B 100 GLU ASN GLY ARG PHE GLY PHE ASN VAL LYS GLY GLY TYR SEQRES 3 B 100 ASP GLN LYS MET PRO VAL ILE VAL SER ARG VAL ALA PRO SEQRES 4 B 100 GLY THR PRO ALA ASP LEU CYS VAL PRO ARG LEU ASN GLU SEQRES 5 B 100 GLY ASP GLN VAL VAL LEU ILE ASN GLY ARG ASP ILE ALA SEQRES 6 B 100 GLU HIS THR HIS ASP GLN VAL VAL LEU PHE ILE LYS ALA SEQRES 7 B 100 SER CYS GLU ARG HIS SER GLY GLU LEU MET LEU LEU VAL SEQRES 8 B 100 ARG PRO ASN ALA VAL GLU SER THR VAL FORMUL 3 HOH *72(H2 O) HELIX 1 1 TYR A 536 LYS A 539 5 4 HELIX 2 2 THR A 551 CYS A 556 1 6 HELIX 3 3 THR A 578 ALA A 588 1 11 HELIX 4 4 SER A 589 ARG A 592 5 4 HELIX 5 5 TYR B 536 LYS B 539 5 4 HELIX 6 6 THR B 551 CYS B 556 1 6 HELIX 7 7 THR B 578 ALA B 588 1 11 SHEET 1 AA 4 VAL A 516 MET A 520 0 SHEET 2 AA 4 LEU A 597 ARG A 602 -1 O LEU A 597 N MET A 520 SHEET 3 AA 4 GLN A 565 ILE A 569 -1 O GLN A 565 N ARG A 602 SHEET 4 AA 4 ARG A 572 ASP A 573 -1 O ARG A 572 N ILE A 569 SHEET 1 AB 2 PHE A 530 GLY A 535 0 SHEET 2 AB 2 MET A 540 VAL A 547 -1 O MET A 540 N GLY A 535 SHEET 1 AC 3 GLU A 607 THR A 609 0 SHEET 2 AC 3 PHE B 530 GLY B 535 -1 O VAL B 532 N SER A 608 SHEET 3 AC 3 MET B 540 VAL B 547 -1 O MET B 540 N GLY B 535 SHEET 1 BA 4 VAL B 516 MET B 520 0 SHEET 2 BA 4 LEU B 597 ARG B 602 -1 O LEU B 597 N MET B 520 SHEET 3 BA 4 GLN B 565 ILE B 569 -1 O GLN B 565 N ARG B 602 SHEET 4 BA 4 ARG B 572 ASP B 573 -1 O ARG B 572 N ILE B 569 CISPEP 1 VAL A 557 PRO A 558 0 -3.06 CISPEP 2 VAL B 557 PRO B 558 0 -9.98 CRYST1 36.489 71.015 71.598 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027406 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014082 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013967 0.00000 MTRIX1 1 0.992000 0.037000 -0.117000 -8.44412 1 MTRIX2 1 0.118000 -0.022000 0.993000 15.43300 1 MTRIX3 1 0.034000 -0.999000 -0.027000 17.89650 1