HEADER LIGASE 29-FEB-08 2VPI TITLE HUMAN GMP SYNTHETASE - GLUTAMINASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GMP SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: GLUTAMINASE DOMAIN, RESIDUES 25-219; COMPND 5 SYNONYM: GLUTAMINE AMIDOTRANSFERASE, GMP SYNTHETASE; COMPND 6 EC: 6.3.5.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: R3 PRARE; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS GUANINE MONOPHOSPHATE SYNTHETASE, PHOSPHOPROTEIN, GMP SYNTHETASE, GMP KEYWDS 2 BIOSYNTHESIS, GLUTAMINE AMIDOTRANSFERASE, GMPS, LIGASE, CYTOPLASM, KEYWDS 3 ATP-BINDING, PROTO-ONCOGENE, GLUTAMINASE DOMAIN, NUCLEOTIDE-BINDING, KEYWDS 4 PURINE BIOSYNTHESIS, CHROMOSOMAL REARRANGEMENT EXPDTA X-RAY DIFFRACTION AUTHOR M.WELIN,L.TRESAUGUES,C.H.ARROWSMITH,H.BERGLUND,R.D.BUSAM,R.COLLINS, AUTHOR 2 L.G.DAHLGREN,A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM, AUTHOR 3 M.D.HERMAN,I.JOHANSSON,A.KALLAS,T.KARLBERG,T.KOTENYOVA,L.LEHTIO, AUTHOR 4 M.MOCHE,M.E.NILSSON,T.NYMAN,C.PERSSON,J.SAGEMARK,L.SVENSSON, AUTHOR 5 A.G.THORSELL,S.VAN DER BERG,J.WEIGELT,P.NORDLUND,STRUCTURAL GENOMICS AUTHOR 6 CONSORTIUM (SGC) REVDAT 5 13-DEC-23 2VPI 1 REMARK REVDAT 4 07-MAR-18 2VPI 1 SOURCE REVDAT 3 29-APR-15 2VPI 1 SOURCE AUTHOR REMARK VERSN REVDAT 3 2 1 FORMUL REVDAT 2 24-FEB-09 2VPI 1 VERSN REVDAT 1 11-MAR-08 2VPI 0 JRNL AUTH M.WELIN,L.TRESAUGUES,C.H.ARROWSMITH,H.BERGLUND,R.D.BUSAM, JRNL AUTH 2 R.COLLINS,L.G.DAHLGREN,A.M.EDWARDS,S.FLODIN,A.FLORES, JRNL AUTH 3 S.GRASLUND,M.HAMMARSTROM,M.D.HERMAN,I.JOHANSSON,A.KALLAS, JRNL AUTH 4 T.KARLBERG,T.KOTENYOVA,L.LEHTIO,M.MOCHE,M.E.NILSSON,T.NYMAN, JRNL AUTH 5 C.PERSSON,J.SAGEMARK,L.SVENSSON,A.G.THORSELL,S.VAN DEN BERG, JRNL AUTH 6 J.WEIGELT,P.NORDLUND JRNL TITL HUMAN GMP SYNTHETASE - GLUTAMINASE DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0040 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 13703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 733 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 951 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2837 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : 0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.61000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.621 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.300 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.203 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.472 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.854 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2893 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3900 ; 1.227 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 373 ; 5.997 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;33.269 ;24.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 502 ;16.053 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;21.629 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 445 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2152 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1189 ; 0.186 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1978 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 142 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.184 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.169 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1893 ; 0.550 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2956 ; 0.954 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1107 ; 1.516 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 942 ; 2.550 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 24 A 54 1 REMARK 3 1 B 24 B 54 1 REMARK 3 2 A 64 A 123 1 REMARK 3 2 B 64 B 123 1 REMARK 3 3 A 125 A 139 1 REMARK 3 3 B 125 B 139 1 REMARK 3 4 A 143 A 219 1 REMARK 3 4 B 143 B 219 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1312 ; 0.04 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 1312 ; 0.07 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 77-85 IN CHAIN A AND 77-86 IN CHAIN B ARE REMARK 3 DISORDERED. MET 24 IS FROM HIS TAG AND CORRESPONDS TO A TYR IN REMARK 3 BIOLOGICAL SEQUENCE. REMARK 4 REMARK 4 2VPI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1290035506. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14466 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 4.130 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.88 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1GPM REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE 0.1 M BIS-TRIS REMARK 280 PH 5.5 25% PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 60.44000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 VAL A 12 REMARK 465 ASP A 13 REMARK 465 LEU A 14 REMARK 465 GLY A 15 REMARK 465 THR A 16 REMARK 465 GLU A 17 REMARK 465 ASN A 18 REMARK 465 LEU A 19 REMARK 465 TYR A 20 REMARK 465 PHE A 21 REMARK 465 GLN A 22 REMARK 465 SER A 23 REMARK 465 GLY A 77 REMARK 465 PRO A 78 REMARK 465 ASN A 79 REMARK 465 SER A 80 REMARK 465 VAL A 81 REMARK 465 TYR A 82 REMARK 465 ALA A 83 REMARK 465 GLU A 84 REMARK 465 ASP A 85 REMARK 465 MET B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 SER B 9 REMARK 465 SER B 10 REMARK 465 GLY B 11 REMARK 465 VAL B 12 REMARK 465 ASP B 13 REMARK 465 LEU B 14 REMARK 465 GLY B 15 REMARK 465 THR B 16 REMARK 465 GLU B 17 REMARK 465 ASN B 18 REMARK 465 LEU B 19 REMARK 465 TYR B 20 REMARK 465 PHE B 21 REMARK 465 GLN B 22 REMARK 465 SER B 23 REMARK 465 GLY B 77 REMARK 465 PRO B 78 REMARK 465 ASN B 79 REMARK 465 SER B 80 REMARK 465 VAL B 81 REMARK 465 TYR B 82 REMARK 465 ALA B 83 REMARK 465 GLU B 84 REMARK 465 ASP B 85 REMARK 465 ALA B 86 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 88 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 88 CZ3 CH2 REMARK 470 TRP B 88 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 88 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 188 O HOH A 2040 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 44 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 44 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 44 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG B 44 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 104 -108.73 56.21 REMARK 500 ASP A 158 -94.35 -100.42 REMARK 500 ASN A 198 41.02 -107.90 REMARK 500 CYS B 104 -111.53 54.60 REMARK 500 ASP B 158 -93.72 -98.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 CONTAINS AN N-TERMINAL HEXAHISTIDINE TAG REMARK 999 MHHHHHHSSGVDLGTENLYFQSM DBREF 2VPI A 2 24 PDB 2VPI 2VPI 2 24 DBREF 2VPI A 25 219 UNP P49915 GUAA_HUMAN 25 219 DBREF 2VPI B 2 24 PDB 2VPI 2VPI 2 24 DBREF 2VPI B 25 219 UNP P49915 GUAA_HUMAN 25 219 SEQRES 1 A 218 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 218 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLU GLY ALA SEQRES 3 A 218 VAL VAL ILE LEU ASP ALA GLY ALA GLN TYR GLY LYS VAL SEQRES 4 A 218 ILE ASP ARG ARG VAL ARG GLU LEU PHE VAL GLN SER GLU SEQRES 5 A 218 ILE PHE PRO LEU GLU THR PRO ALA PHE ALA ILE LYS GLU SEQRES 6 A 218 GLN GLY PHE ARG ALA ILE ILE ILE SER GLY GLY PRO ASN SEQRES 7 A 218 SER VAL TYR ALA GLU ASP ALA PRO TRP PHE ASP PRO ALA SEQRES 8 A 218 ILE PHE THR ILE GLY LYS PRO VAL LEU GLY ILE CYS TYR SEQRES 9 A 218 GLY MET GLN MET MET ASN LYS VAL PHE GLY GLY THR VAL SEQRES 10 A 218 HIS LYS LYS SER VAL ARG GLU ASP GLY VAL PHE ASN ILE SEQRES 11 A 218 SER VAL ASP ASN THR CYS SER LEU PHE ARG GLY LEU GLN SEQRES 12 A 218 LYS GLU GLU VAL VAL LEU LEU THR HIS GLY ASP SER VAL SEQRES 13 A 218 ASP LYS VAL ALA ASP GLY PHE LYS VAL VAL ALA ARG SER SEQRES 14 A 218 GLY ASN ILE VAL ALA GLY ILE ALA ASN GLU SER LYS LYS SEQRES 15 A 218 LEU TYR GLY ALA GLN PHE HIS PRO GLU VAL GLY LEU THR SEQRES 16 A 218 GLU ASN GLY LYS VAL ILE LEU LYS ASN PHE LEU TYR ASP SEQRES 17 A 218 ILE ALA GLY CYS SER GLY THR PHE THR VAL SEQRES 1 B 218 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 218 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLU GLY ALA SEQRES 3 B 218 VAL VAL ILE LEU ASP ALA GLY ALA GLN TYR GLY LYS VAL SEQRES 4 B 218 ILE ASP ARG ARG VAL ARG GLU LEU PHE VAL GLN SER GLU SEQRES 5 B 218 ILE PHE PRO LEU GLU THR PRO ALA PHE ALA ILE LYS GLU SEQRES 6 B 218 GLN GLY PHE ARG ALA ILE ILE ILE SER GLY GLY PRO ASN SEQRES 7 B 218 SER VAL TYR ALA GLU ASP ALA PRO TRP PHE ASP PRO ALA SEQRES 8 B 218 ILE PHE THR ILE GLY LYS PRO VAL LEU GLY ILE CYS TYR SEQRES 9 B 218 GLY MET GLN MET MET ASN LYS VAL PHE GLY GLY THR VAL SEQRES 10 B 218 HIS LYS LYS SER VAL ARG GLU ASP GLY VAL PHE ASN ILE SEQRES 11 B 218 SER VAL ASP ASN THR CYS SER LEU PHE ARG GLY LEU GLN SEQRES 12 B 218 LYS GLU GLU VAL VAL LEU LEU THR HIS GLY ASP SER VAL SEQRES 13 B 218 ASP LYS VAL ALA ASP GLY PHE LYS VAL VAL ALA ARG SER SEQRES 14 B 218 GLY ASN ILE VAL ALA GLY ILE ALA ASN GLU SER LYS LYS SEQRES 15 B 218 LEU TYR GLY ALA GLN PHE HIS PRO GLU VAL GLY LEU THR SEQRES 16 B 218 GLU ASN GLY LYS VAL ILE LEU LYS ASN PHE LEU TYR ASP SEQRES 17 B 218 ILE ALA GLY CYS SER GLY THR PHE THR VAL FORMUL 3 HOH *100(H2 O) HELIX 1 1 GLY A 38 LEU A 48 1 11 HELIX 2 2 PRO A 60 GLY A 68 1 9 HELIX 3 3 ASP A 90 THR A 95 5 6 HELIX 4 4 TYR A 105 PHE A 114 1 10 HELIX 5 5 CYS A 137 ARG A 141 5 5 HELIX 6 6 ASN A 198 TYR A 208 1 11 HELIX 7 7 GLY B 38 LEU B 48 1 11 HELIX 8 8 PRO B 60 GLY B 68 1 9 HELIX 9 9 ASP B 90 THR B 95 5 6 HELIX 10 10 TYR B 105 PHE B 114 1 10 HELIX 11 11 CYS B 137 ARG B 141 5 5 HELIX 12 12 ASN B 198 TYR B 208 1 11 SHEET 1 AA 9 SER A 52 ILE A 54 0 SHEET 2 AA 9 VAL A 28 ASP A 32 1 O VAL A 28 N GLU A 53 SHEET 3 AA 9 ALA A 71 GLY A 76 1 O ALA A 71 N VAL A 29 SHEET 4 AA 9 VAL A 100 CYS A 104 1 O LEU A 101 N ILE A 74 SHEET 5 AA 9 LEU A 184 ALA A 187 1 O TYR A 185 N GLY A 102 SHEET 6 AA 9 ILE A 173 ASN A 179 -1 O ILE A 177 N GLY A 186 SHEET 7 AA 9 LYS A 165 SER A 170 -1 O LYS A 165 N ALA A 178 SHEET 8 AA 9 GLY A 127 VAL A 133 -1 O SER A 132 N ARG A 169 SHEET 9 AA 9 GLU A 146 LEU A 151 -1 O GLU A 147 N ILE A 131 SHEET 1 AB 2 VAL A 118 VAL A 123 0 SHEET 2 AB 2 GLY A 154 VAL A 157 -1 O GLY A 154 N VAL A 123 SHEET 1 BA 9 SER B 52 ILE B 54 0 SHEET 2 BA 9 VAL B 28 ASP B 32 1 O VAL B 28 N GLU B 53 SHEET 3 BA 9 ALA B 71 GLY B 76 1 O ALA B 71 N VAL B 29 SHEET 4 BA 9 VAL B 100 CYS B 104 1 O LEU B 101 N ILE B 74 SHEET 5 BA 9 LEU B 184 ALA B 187 1 O TYR B 185 N GLY B 102 SHEET 6 BA 9 ILE B 173 ASN B 179 -1 O ILE B 177 N GLY B 186 SHEET 7 BA 9 LYS B 165 SER B 170 -1 O LYS B 165 N ALA B 178 SHEET 8 BA 9 GLY B 127 VAL B 133 -1 O SER B 132 N ARG B 169 SHEET 9 BA 9 GLU B 146 LEU B 151 -1 O GLU B 147 N ILE B 131 SHEET 1 BB 2 VAL B 118 VAL B 123 0 SHEET 2 BB 2 GLY B 154 VAL B 157 -1 O GLY B 154 N VAL B 123 CRYST1 35.680 120.880 47.320 90.00 106.43 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028027 0.000000 0.008265 0.00000 SCALE2 0.000000 0.008273 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022032 0.00000 MTRIX1 1 0.845800 -0.030980 0.532600 -6.03900 1 MTRIX2 1 -0.027080 -0.999500 -0.015130 31.35000 1 MTRIX3 1 0.532800 -0.001620 -0.846300 22.54000 1