HEADER TRANSPORT 03-MAR-08 2VPN TITLE HIGH-RESOLUTION STRUCTURE OF THE PERIPLASMIC ECTOINE- TITLE 2 BINDING PROTEIN FROM TEAABC TRAP-TRANSPORTER OF HALOMONAS TITLE 3 ELONGATA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC SUBSTRATE BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 26-341; COMPND 5 SYNONYM: ECTOINE-PERIPLASMIC BINDING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALOMONAS ELONGATA; SOURCE 3 ORGANISM_TAXID: 2746; SOURCE 4 STRAIN: DSM 2581T; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET 26 KEYWDS ECTOINE, HYDROXYECTOINE, TRAP-TRANSPORTER, PERIPLASMIC KEYWDS 2 BINDING PROTEIN, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR S.I.KUHLMANN,A.C.TERWISSCHA VAN SCHELTINGA,R.BIENERT, AUTHOR 2 H.J.KUNTE,C.ZIEGLER REVDAT 3 24-FEB-09 2VPN 1 VERSN REVDAT 2 16-SEP-08 2VPN 1 JRNL REVDAT 1 26-AUG-08 2VPN 0 JRNL AUTH S.I.KUHLMANN,A.C.TERWISSCHA VAN SCHELTINGA, JRNL AUTH 2 R.BIENERT,H.J.KUNTE,C.ZIEGLER JRNL TITL 1.55 A STRUCTURE OF THE ECTOINE BINDING PROTEIN JRNL TITL 2 TEAA OF THE OSMOREGULATED TRAP-TRANSPORTER TEAABC JRNL TITL 3 FROM HALOMONAS ELONGATA. JRNL REF BIOCHEMISTRY V. 47 9475 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18702523 JRNL DOI 10.1021/BI8006719 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0069 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 79385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1606 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5718 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5136 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 665 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : 0.41000 REMARK 3 B13 (A**2) : -0.56000 REMARK 3 B23 (A**2) : 0.02000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.460 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5299 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3487 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7228 ; 1.291 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8600 ; 0.957 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 671 ; 5.392 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 285 ;38.252 ;26.421 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 899 ;12.306 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;10.478 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 761 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6112 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1026 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1073 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3668 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2677 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2700 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 491 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.176 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 37 ; 0.278 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.216 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4206 ; 2.131 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5217 ; 2.619 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2430 ; 3.224 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1998 ; 4.202 ; 8.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 5 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 41 2 REMARK 3 1 B 1 B 41 2 REMARK 3 2 A 47 A 154 2 REMARK 3 2 B 47 B 154 2 REMARK 3 3 A 165 A 311 2 REMARK 3 3 B 165 B 311 2 REMARK 3 4 A 42 A 46 5 REMARK 3 4 B 42 B 46 5 REMARK 3 5 A 154 A 165 4 REMARK 3 5 B 154 B 165 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1612 ; 0.07 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 2138 ; 0.37 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 7 ; 0.56 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 1612 ; 0.18 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2138 ; 0.77 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 7 ; 4.64 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2VPN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-MAR-08. REMARK 100 THE PDBE ID CODE IS EBI-35485. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9781 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81024 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.55 REMARK 200 RESOLUTION RANGE LOW (A) : 20.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 3 REMARK 200 R MERGE (I) : 0.01 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.20 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.9 REMARK 200 R MERGE FOR SHELL (I) : 0.06 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 0.1 M MGCL2 REMARK 280 AND 25.5 % PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 43 REMARK 465 GLU A 44 REMARK 465 SER A 45 REMARK 465 ASP A 46 REMARK 465 GLN A 311 REMARK 465 SER A 312 REMARK 465 GLU A 313 REMARK 465 SER A 314 REMARK 465 GLU A 315 REMARK 465 GLY A 316 REMARK 465 GLN B 311 REMARK 465 SER B 312 REMARK 465 GLU B 313 REMARK 465 SER B 314 REMARK 465 GLU B 315 REMARK 465 GLY B 316 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 301 CG OD1 OD2 REMARK 470 ASP B 301 CG OD1 OD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; REMARK 480 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 480 I=INSERTION CODE): REMARK 480 M RES CSSEQI ATOMS REMARK 480 ASN B 54 CA CB CG OD1 ND2 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 147 70.13 -103.09 REMARK 500 SER B 198 72.26 -153.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 600 REMARK 600 HETEROGEN REMARK 600 (4S)-2-METHYL-1,4,5,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC REMARK 600 ACID (4CS): ECTOINE REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1312 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2152 O REMARK 620 2 HOH B2131 O 86.2 REMARK 620 3 HOH B2133 O 89.4 82.5 REMARK 620 4 HOH A2150 O 92.1 173.2 90.9 REMARK 620 5 ASN A 140A ND2 85.4 95.2 174.4 91.2 REMARK 620 6 HOH B2130 O 168.3 93.8 79.0 86.5 106.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1313 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2265 O REMARK 620 2 HOH A2262 O 89.6 REMARK 620 3 HOH A2264 O 90.6 89.1 REMARK 620 4 HOH A2108 O 94.9 92.2 174.3 REMARK 620 5 HOH A2106 O 90.1 178.2 92.7 86.1 REMARK 620 6 HOH B2090 O 176.7 89.6 86.2 88.3 90.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1314 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2331 O REMARK 620 2 HOH A2254 O 94.4 REMARK 620 3 HOH A2258 O 84.3 100.6 REMARK 620 4 HOH B2062 O 171.9 92.1 99.2 REMARK 620 5 HOH B2332 O 94.9 81.5 177.7 81.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1315 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2143 O REMARK 620 2 HOH A2145 O 93.3 REMARK 620 3 HOH A2221 O 85.9 96.9 REMARK 620 4 HOH A2141 O 86.2 177.2 85.9 REMARK 620 5 HOH A2147 O 89.5 94.9 167.6 82.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1312 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2043 O REMARK 620 2 HOH B2054 O 97.5 REMARK 620 3 GLU B 27 O 80.2 164.7 REMARK 620 4 HOH B2040 O 93.1 92.6 72.4 REMARK 620 5 SER B 30 O 166.7 95.6 86.6 84.2 REMARK 620 6 HOH B2059 O 92.0 94.6 100.6 170.5 89.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1313 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2127 O REMARK 620 2 HOH B2123 O 87.1 REMARK 620 3 HOH B2272 O 83.6 79.0 REMARK 620 4 HOH B2274 O 174.4 87.3 94.8 REMARK 620 5 HOH B2280 O 92.0 168.2 89.2 93.4 REMARK 620 6 HOH B2291 O 90.1 106.7 171.4 92.0 85.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1314 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2074 O REMARK 620 2 HOH B2180 O 95.6 REMARK 620 3 HOH B2185 O 169.9 85.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1315 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2085 O REMARK 620 2 HOH B2179 O 82.8 REMARK 620 3 HOH B2186 O 165.4 106.5 REMARK 620 4 HOH B2183 O 92.8 97.5 75.1 REMARK 620 N 1 2 3 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4CS A1311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4CS B1311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1314 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1315 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VPO RELATED DB: PDB REMARK 900 HIGH RESOLUTION STRUCTURE OF THE PERIPLASMIC REMARK 900 BINDING PROTEIN TEAA FROM TEAABC TRAP REMARK 900 TRANSPORTER OF HALOMONAS ELONGATA IN COMPLEX REMARK 900 WITH HYDROXYECTOINE DBREF 2VPN A 1 316 UNP Q8VPB3 Q8VPB3_HALEL 26 341 DBREF 2VPN B 1 316 UNP Q8VPB3 Q8VPB3_HALEL 26 341 SEQRES 1 A 316 ASP ASN TRP ARG TYR ALA HIS GLU GLU TYR GLU GLY ASP SEQRES 2 A 316 VAL GLN ASP VAL PHE ALA GLN ALA PHE LYS GLY TYR VAL SEQRES 3 A 316 GLU ASP ASN SER ASP HIS THR VAL GLN VAL TYR ARG PHE SEQRES 4 A 316 GLY GLU LEU GLY GLU SER ASP ASP ILE MET GLU GLN THR SEQRES 5 A 316 GLN ASN GLY ILE LEU GLN PHE VAL ASN GLN SER PRO GLY SEQRES 6 A 316 PHE THR GLY SER LEU ILE PRO SER ALA GLN ILE PHE PHE SEQRES 7 A 316 ILE PRO TYR LEU MET PRO THR ASP MET ASP THR VAL LEU SEQRES 8 A 316 GLU PHE PHE ASP GLU SER LYS ALA ILE ASN GLU MET PHE SEQRES 9 A 316 PRO LYS LEU TYR ALA GLU HIS GLY LEU GLU LEU LEU LYS SEQRES 10 A 316 MET TYR PRO GLU GLY GLU MET VAL VAL THR ALA ASP GLU SEQRES 11 A 316 PRO ILE THR SER PRO GLU ASP PHE ASP ASN LYS LYS ILE SEQRES 12 A 316 ARG THR MET THR ASN PRO LEU LEU ALA GLU THR TYR LYS SEQRES 13 A 316 ALA PHE GLY ALA THR PRO THR PRO LEU PRO TRP GLY GLU SEQRES 14 A 316 VAL TYR GLY GLY LEU GLN THR GLY ILE ILE ASP GLY GLN SEQRES 15 A 316 GLU ASN PRO ILE PHE TRP ILE GLU SER GLY GLY LEU TYR SEQRES 16 A 316 GLU VAL SER PRO ASN LEU THR PHE THR SER HIS GLY TRP SEQRES 17 A 316 PHE THR THR ALA MET MET ALA ASN GLN ASP PHE TYR GLU SEQRES 18 A 316 GLY LEU SER GLU GLU ASP GLN GLN LEU VAL GLN ASP ALA SEQRES 19 A 316 ALA ASP ALA ALA TYR ASP HIS THR ILE GLU HIS ILE LYS SEQRES 20 A 316 GLY LEU SER GLU GLU SER LEU GLU LYS ILE LYS ALA ALA SEQRES 21 A 316 SER ASP GLU VAL THR VAL THR ARG LEU ASN ASP GLU GLN SEQRES 22 A 316 ILE GLN ALA PHE LYS GLU ARG ALA PRO GLN VAL GLU GLU SEQRES 23 A 316 LYS PHE ILE GLU MET THR GLY GLU GLN GLY GLN GLU LEU SEQRES 24 A 316 LEU ASP GLN PHE LYS ALA ASP LEU LYS ALA VAL GLN SER SEQRES 25 A 316 GLU SER GLU GLY SEQRES 1 B 316 ASP ASN TRP ARG TYR ALA HIS GLU GLU TYR GLU GLY ASP SEQRES 2 B 316 VAL GLN ASP VAL PHE ALA GLN ALA PHE LYS GLY TYR VAL SEQRES 3 B 316 GLU ASP ASN SER ASP HIS THR VAL GLN VAL TYR ARG PHE SEQRES 4 B 316 GLY GLU LEU GLY GLU SER ASP ASP ILE MET GLU GLN THR SEQRES 5 B 316 GLN ASN GLY ILE LEU GLN PHE VAL ASN GLN SER PRO GLY SEQRES 6 B 316 PHE THR GLY SER LEU ILE PRO SER ALA GLN ILE PHE PHE SEQRES 7 B 316 ILE PRO TYR LEU MET PRO THR ASP MET ASP THR VAL LEU SEQRES 8 B 316 GLU PHE PHE ASP GLU SER LYS ALA ILE ASN GLU MET PHE SEQRES 9 B 316 PRO LYS LEU TYR ALA GLU HIS GLY LEU GLU LEU LEU LYS SEQRES 10 B 316 MET TYR PRO GLU GLY GLU MET VAL VAL THR ALA ASP GLU SEQRES 11 B 316 PRO ILE THR SER PRO GLU ASP PHE ASP ASN LYS LYS ILE SEQRES 12 B 316 ARG THR MET THR ASN PRO LEU LEU ALA GLU THR TYR LYS SEQRES 13 B 316 ALA PHE GLY ALA THR PRO THR PRO LEU PRO TRP GLY GLU SEQRES 14 B 316 VAL TYR GLY GLY LEU GLN THR GLY ILE ILE ASP GLY GLN SEQRES 15 B 316 GLU ASN PRO ILE PHE TRP ILE GLU SER GLY GLY LEU TYR SEQRES 16 B 316 GLU VAL SER PRO ASN LEU THR PHE THR SER HIS GLY TRP SEQRES 17 B 316 PHE THR THR ALA MET MET ALA ASN GLN ASP PHE TYR GLU SEQRES 18 B 316 GLY LEU SER GLU GLU ASP GLN GLN LEU VAL GLN ASP ALA SEQRES 19 B 316 ALA ASP ALA ALA TYR ASP HIS THR ILE GLU HIS ILE LYS SEQRES 20 B 316 GLY LEU SER GLU GLU SER LEU GLU LYS ILE LYS ALA ALA SEQRES 21 B 316 SER ASP GLU VAL THR VAL THR ARG LEU ASN ASP GLU GLN SEQRES 22 B 316 ILE GLN ALA PHE LYS GLU ARG ALA PRO GLN VAL GLU GLU SEQRES 23 B 316 LYS PHE ILE GLU MET THR GLY GLU GLN GLY GLN GLU LEU SEQRES 24 B 316 LEU ASP GLN PHE LYS ALA ASP LEU LYS ALA VAL GLN SER SEQRES 25 B 316 GLU SER GLU GLY HET 4CS A1311 10 HET 4CS B1311 10 HET MG A1312 1 HET MG A1313 1 HET MG A1314 1 HET MG A1315 1 HET MG B1312 1 HET MG B1313 1 HET MG B1314 1 HET MG B1315 1 HETNAM 4CS (4S)-2-METHYL-1,4,5,6-TETRAHYDROPYRIMIDINE-4- HETNAM 2 4CS CARBOXYLIC ACID HETNAM MG MAGNESIUM ION FORMUL 3 4CS 2(C6 H10 N2 O2) FORMUL 4 MG 8(MG 2+) FORMUL 5 HOH *665(H2 O1) HELIX 1 1 ASP A 13 ASN A 29 1 17 HELIX 2 2 ASP A 47 ASN A 54 1 8 HELIX 3 3 SER A 63 GLY A 68 1 6 HELIX 4 4 ILE A 71 ILE A 79 5 9 HELIX 5 5 ASP A 86 SER A 97 1 12 HELIX 6 6 SER A 97 GLU A 102 1 6 HELIX 7 7 GLU A 102 GLU A 110 1 9 HELIX 8 8 SER A 134 ASP A 139 5 6 HELIX 9 9 ASN A 148 GLY A 159 1 12 HELIX 10 10 PRO A 166 GLY A 168 5 3 HELIX 11 11 GLU A 169 THR A 176 1 8 HELIX 12 12 ILE A 186 GLY A 192 1 7 HELIX 13 13 GLY A 193 VAL A 197 5 5 HELIX 14 14 GLN A 217 LEU A 223 1 7 HELIX 15 15 SER A 224 LYS A 247 1 24 HELIX 16 16 GLY A 248 SER A 261 1 14 HELIX 17 17 ASN A 270 GLU A 279 1 10 HELIX 18 18 ARG A 280 VAL A 310 1 31 HELIX 19 19 ASP B 13 SER B 30 1 18 HELIX 20 20 GLU B 44 ASN B 54 1 11 HELIX 21 21 SER B 63 GLY B 68 1 6 HELIX 22 22 ILE B 71 ILE B 79 5 9 HELIX 23 23 ASP B 86 SER B 97 1 12 HELIX 24 24 SER B 97 GLU B 102 1 6 HELIX 25 25 GLU B 102 GLU B 110 1 9 HELIX 26 26 SER B 134 ASP B 139 5 6 HELIX 27 27 ASN B 148 GLY B 159 1 12 HELIX 28 28 PRO B 166 GLY B 168 5 3 HELIX 29 29 GLU B 169 THR B 176 1 8 HELIX 30 30 ILE B 186 GLY B 192 1 7 HELIX 31 31 GLY B 193 VAL B 197 5 5 HELIX 32 32 GLN B 217 LEU B 223 1 7 HELIX 33 33 SER B 224 LYS B 247 1 24 HELIX 34 34 GLY B 248 SER B 261 1 14 HELIX 35 35 ASN B 270 GLU B 279 1 10 HELIX 36 36 ARG B 280 VAL B 310 1 31 SHEET 1 AA 6 THR A 33 TYR A 37 0 SHEET 2 AA 6 ASN A 2 ALA A 6 1 O TRP A 3 N GLN A 35 SHEET 3 AA 6 PHE A 59 GLN A 62 1 O PHE A 59 N ALA A 6 SHEET 4 AA 6 TRP A 208 ASN A 216 -1 O ALA A 212 N GLN A 62 SHEET 5 AA 6 LEU A 113 ALA A 128 -1 O GLU A 114 N ALA A 215 SHEET 6 AA 6 GLY A 181 PRO A 185 -1 O GLN A 182 N THR A 127 SHEET 1 AB 7 THR A 33 TYR A 37 0 SHEET 2 AB 7 ASN A 2 ALA A 6 1 O TRP A 3 N GLN A 35 SHEET 3 AB 7 PHE A 59 GLN A 62 1 O PHE A 59 N ALA A 6 SHEET 4 AB 7 TRP A 208 ASN A 216 -1 O ALA A 212 N GLN A 62 SHEET 5 AB 7 LEU A 113 ALA A 128 -1 O GLU A 114 N ALA A 215 SHEET 6 AB 7 ASN A 200 PHE A 203 -1 O ASN A 200 N ALA A 128 SHEET 7 AB 7 THR A 265 ARG A 268 1 O THR A 265 N LEU A 201 SHEET 1 AC 2 LYS A 142 THR A 145 0 SHEET 2 AC 2 THR A 161 PRO A 164 1 O THR A 161 N ILE A 143 SHEET 1 BA 6 THR B 33 TYR B 37 0 SHEET 2 BA 6 ASN B 2 ALA B 6 1 O TRP B 3 N GLN B 35 SHEET 3 BA 6 PHE B 59 GLN B 62 1 O PHE B 59 N ALA B 6 SHEET 4 BA 6 TRP B 208 ASN B 216 -1 O ALA B 212 N GLN B 62 SHEET 5 BA 6 LEU B 113 ALA B 128 -1 O GLU B 114 N ALA B 215 SHEET 6 BA 6 GLY B 181 PRO B 185 -1 O GLN B 182 N THR B 127 SHEET 1 BB 7 THR B 33 TYR B 37 0 SHEET 2 BB 7 ASN B 2 ALA B 6 1 O TRP B 3 N GLN B 35 SHEET 3 BB 7 PHE B 59 GLN B 62 1 O PHE B 59 N ALA B 6 SHEET 4 BB 7 TRP B 208 ASN B 216 -1 O ALA B 212 N GLN B 62 SHEET 5 BB 7 LEU B 113 ALA B 128 -1 O GLU B 114 N ALA B 215 SHEET 6 BB 7 ASN B 200 PHE B 203 -1 O ASN B 200 N ALA B 128 SHEET 7 BB 7 THR B 265 ARG B 268 1 O THR B 265 N LEU B 201 SHEET 1 BC 2 LYS B 142 THR B 145 0 SHEET 2 BC 2 THR B 161 PRO B 164 1 O THR B 161 N ILE B 143 LINK MG MG A1312 O HOH A2152 1555 1555 2.04 LINK MG MG A1312 O HOH B2131 1555 1546 2.19 LINK MG MG A1312 O HOH B2133 1555 1546 2.18 LINK MG MG A1312 O HOH A2150 1555 1555 2.09 LINK MG MG A1312 ND2AASN A 140 1555 1555 2.13 LINK MG MG A1312 O HOH B2130 1555 1546 2.09 LINK MG MG A1313 O HOH A2265 1555 1555 2.05 LINK MG MG A1313 O HOH A2262 1555 1555 2.14 LINK MG MG A1313 O HOH A2264 1555 1555 2.11 LINK MG MG A1313 O HOH A2108 1555 1555 2.10 LINK MG MG A1313 O HOH A2106 1555 1555 2.08 LINK MG MG A1313 O HOH B2090 1555 1555 2.18 LINK MG MG A1314 O HOH B2331 1555 1545 2.04 LINK MG MG A1314 O HOH A2254 1555 1555 2.20 LINK MG MG A1314 O HOH A2258 1555 1555 2.01 LINK MG MG A1314 O HOH B2062 1555 1555 2.07 LINK MG MG A1314 O HOH B2332 1555 1545 2.38 LINK MG MG A1315 O HOH A2143 1555 1555 2.05 LINK MG MG A1315 O HOH A2145 1555 1555 2.14 LINK MG MG A1315 O HOH A2221 1555 1645 1.94 LINK MG MG A1315 O HOH A2141 1555 1555 1.92 LINK MG MG A1315 O HOH A2147 1555 1555 2.18 LINK MG MG B1312 O HOH B2054 1555 1555 2.69 LINK MG MG B1312 O GLU B 27 1555 1555 2.35 LINK MG MG B1312 O HOH B2040 1555 1555 2.40 LINK MG MG B1312 O SER B 30 1555 1555 2.36 LINK MG MG B1312 O HOH B2059 1555 1555 2.04 LINK MG MG B1312 O HOH B2043 1555 1555 2.28 LINK MG MG B1313 O HOH B2123 1555 1555 1.93 LINK MG MG B1313 O HOH B2272 1555 1555 2.05 LINK MG MG B1313 O HOH B2274 1555 1555 2.03 LINK MG MG B1313 O HOH B2280 1555 1555 2.46 LINK MG MG B1313 O HOH B2291 1555 1555 2.14 LINK MG MG B1313 O HOH B2127 1555 1555 2.02 LINK MG MG B1314 O HOH B2180 1555 1555 2.18 LINK MG MG B1314 O HOH B2185 1555 1555 2.17 LINK MG MG B1314 O HOH B2074 1555 1555 2.03 LINK MG MG B1315 O HOH B2179 1555 1555 2.03 LINK MG MG B1315 O HOH B2186 1555 1555 2.33 LINK MG MG B1315 O HOH B2183 1555 1555 2.30 LINK MG MG B1315 O HOH B2085 1555 1555 1.98 SITE 1 AC1 9 GLU A 9 PHE A 66 ARG A 144 TRP A 167 SITE 2 AC1 9 ASN A 184 PRO A 185 TRP A 188 PHE A 209 SITE 3 AC1 9 HOH A2182 SITE 1 AC2 10 GLU B 8 GLU B 9 PHE B 66 ARG B 144 SITE 2 AC2 10 TRP B 167 ASN B 184 PRO B 185 TRP B 188 SITE 3 AC2 10 PHE B 209 HOH B2217 SITE 1 AC3 6 ASN A 140 HOH A2150 HOH A2152 HOH B2130 SITE 2 AC3 6 HOH B2131 HOH B2133 SITE 1 AC4 6 HOH A2106 HOH A2108 HOH A2262 HOH A2264 SITE 2 AC4 6 HOH A2265 HOH B2090 SITE 1 AC5 5 HOH A2254 HOH A2258 HOH B2062 HOH B2331 SITE 2 AC5 5 HOH B2332 SITE 1 AC6 6 GLU A 225 HOH A2141 HOH A2143 HOH A2145 SITE 2 AC6 6 HOH A2147 HOH A2221 SITE 1 AC7 6 GLU B 27 SER B 30 HOH B2040 HOH B2043 SITE 2 AC7 6 HOH B2054 HOH B2059 SITE 1 AC8 6 HOH B2123 HOH B2127 HOH B2272 HOH B2274 SITE 2 AC8 6 HOH B2280 HOH B2291 SITE 1 AC9 3 HOH B2074 HOH B2180 HOH B2185 SITE 1 BC1 4 HOH B2085 HOH B2179 HOH B2183 HOH B2186 CRYST1 48.300 52.200 63.500 80.80 85.80 77.90 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020704 -0.004439 -0.000872 0.00000 SCALE2 0.000000 0.019592 -0.002936 0.00000 SCALE3 0.000000 0.000000 0.015967 0.00000 MTRIX1 1 -0.892400 0.386800 0.232300 62.04000 1 MTRIX2 1 -0.371900 -0.922100 0.106700 88.77830 1 MTRIX3 1 0.255500 0.008800 0.966800 -39.95720 1