HEADER HYDROLASE 25-MAR-08 2VR2 TITLE HUMAN DIHYDROPYRIMIDINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROPYRIMIDINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DHPASE, DHP, DIHYDROPYRIMIDINE AMIDOHYDROLASE, HYDANTOINASE; COMPND 5 EC: 3.5.2.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PNIC-BSA4 KEYWDS HYDANTOINASE, METAL-BINDING, DISEASE MUTATION, DIHYDROPYRIMIDINE KEYWDS 2 AMIDOHYDROLASE, DIHYDROPYRIMIDINASE, NUCLEOTIDE METABOLISM, DHP, KEYWDS 3 DPYS, DHPASE, HYDROLASE, ZN-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.WELIN,T.KARLBERG,J.ANDERSSON,C.H.ARROWSMITH,H.BERGLUND,R.D.BUSAM, AUTHOR 2 R.COLLINS,L.G.DAHLGREN,A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND, AUTHOR 3 M.HAMMARSTROM,M.D.HERMAN,I.JOHANSSON,A.KALLAS,T.KOTENYOVA,L.LEHTIO, AUTHOR 4 M.MOCHE,M.E.NILSSON,T.NYMAN,C.PERSSON,J.SAGEMARK,L.SVENSSON, AUTHOR 5 A.G.THORSELL,L.TRESAUGUES,S.VAN DEN BERG,J.WEIGELT,M.WIKSTROM, AUTHOR 6 P.NORDLUND,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 13-DEC-23 2VR2 1 REMARK LINK REVDAT 4 06-MAY-15 2VR2 1 AUTHOR REVDAT 3 13-JUL-11 2VR2 1 VERSN REVDAT 2 24-FEB-09 2VR2 1 VERSN REVDAT 1 01-APR-08 2VR2 0 JRNL AUTH M.WELIN,T.KARLBERG,J.ANDERSSON,C.H.ARROWSMITH,H.BERGLUND, JRNL AUTH 2 R.D.BUSAM,R.COLLINS,L.G.DAHLGREN,A.M.EDWARDS,S.FLODIN, JRNL AUTH 3 A.FLORES,S.GRASLUND,M.HAMMARSTROM,M.D.HERMAN,I.JOHANSSON, JRNL AUTH 4 A.KALLAS,T.KOTENYOVA,L.LEHTIO,M.MOCHE,M.E.NILSSON,T.NYMAN, JRNL AUTH 5 C.PERSSON,J.SAGEMARK,L.SVENSSON,A.G.THORSELL,L.TRESAUGUES, JRNL AUTH 6 S.VAN DEN BERG,J.WEIGELT,M.WIKSTROM,P.NORDLUND JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN DIHYDROPYRIMIDINASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0040 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 12742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 682 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 881 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3693 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.45000 REMARK 3 B22 (A**2) : 4.45000 REMARK 3 B33 (A**2) : -6.68000 REMARK 3 B12 (A**2) : 2.23000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.386 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.306 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.948 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3777 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5120 ; 0.945 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 476 ; 4.911 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;35.054 ;23.620 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 630 ;15.410 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;14.995 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 570 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2855 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1714 ; 0.170 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2556 ; 0.296 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 103 ; 0.102 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.144 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.098 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2418 ; 0.152 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3821 ; 0.273 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1522 ; 0.321 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1299 ; 0.541 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 493 REMARK 3 ORIGIN FOR THE GROUP (A): 33.2677 -15.0606 -20.2493 REMARK 3 T TENSOR REMARK 3 T11: -0.1482 T22: 0.0047 REMARK 3 T33: -0.0836 T12: 0.0035 REMARK 3 T13: 0.0234 T23: -0.1470 REMARK 3 L TENSOR REMARK 3 L11: 1.3546 L22: 1.2594 REMARK 3 L33: 1.8809 L12: 0.0399 REMARK 3 L13: -0.1525 L23: -0.0466 REMARK 3 S TENSOR REMARK 3 S11: -0.0534 S12: 0.1909 S13: -0.1937 REMARK 3 S21: -0.2660 S22: -0.1482 S23: 0.2629 REMARK 3 S31: 0.3662 S32: -0.2504 S33: 0.2015 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 38-48 ARE DISORDERED. REMARK 4 REMARK 4 2VR2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1290035773. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : TOROIDAL ZERODUR MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13425 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 17.23 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 17.94 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2FTW REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 70% MPD REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.03333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 146.06667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 73.03333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 146.06667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.03333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 146.06667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 73.03333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 146.06667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 15460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 73770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 89.65000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 89.65000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 PRO A 4 REMARK 465 ASP A 38 REMARK 465 LEU A 39 REMARK 465 LEU A 40 REMARK 465 PRO A 41 REMARK 465 PRO A 42 REMARK 465 GLY A 43 REMARK 465 GLY A 44 REMARK 465 ALA A 45 REMARK 465 PRO A 46 REMARK 465 ALA A 47 REMARK 465 GLY A 48 REMARK 465 LYS A 494 REMARK 465 GLY A 495 REMARK 465 GLU A 496 REMARK 465 VAL A 497 REMARK 465 ALA A 498 REMARK 465 THR A 499 REMARK 465 LEU A 500 REMARK 465 LYS A 501 REMARK 465 SER A 502 REMARK 465 ARG A 503 REMARK 465 VAL A 504 REMARK 465 THR A 505 REMARK 465 LYS A 506 REMARK 465 GLU A 507 REMARK 465 ASP A 508 REMARK 465 ALA A 509 REMARK 465 THR A 510 REMARK 465 ALA A 511 REMARK 465 GLY A 512 REMARK 465 THR A 513 REMARK 465 ARG A 514 REMARK 465 LYS A 515 REMARK 465 GLN A 516 REMARK 465 ALA A 517 REMARK 465 HIS A 518 REMARK 465 PRO A 519 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 71 67.51 30.33 REMARK 500 PHE A 74 -88.26 -90.41 REMARK 500 TYR A 164 72.08 62.13 REMARK 500 LEU A 167 -58.86 -131.45 REMARK 500 HIS A 248 74.19 21.79 REMARK 500 ASP A 280 -168.53 -126.02 REMARK 500 CYS A 328 73.87 -151.63 REMARK 500 ASP A 341 103.89 -161.05 REMARK 500 SER A 379 -64.89 -146.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1494 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 67 NE2 REMARK 620 2 HIS A 69 NE2 89.3 REMARK 620 3 ASP A 326 OD1 79.9 90.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1494 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1495 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1496 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN WAS CO-CRYSTALLIZED IN THE PRESENCE OF REMARK 999 CHYMOTRYPSIN AND THE MOST PROBABLE SEQUENCE IN THE CRYSTAL REMARK 999 IS AAPSRLLIRG GRVVNDDFSE VADVLVEDGV VRALGHDLLP PGGAPAGLRV REMARK 999 LDAAGKLVLP GGIDTHTHMQ FPFMGSRSID DFHQGTKAAL SGGTTMIIDF REMARK 999 AIPQKGGSLI EAFETWRSWA DPKVCCDYSL HVAVTWWSDQ VKEEMKILVQ REMARK 999 DKGVNSFKMF MAYKDLYMVT DLELYEAFSR CKEIGAIAQV HAENGDLIAE REMARK 999 GAKKMLALGI TGPEGHELCR PEAVEAEATL RAITIASAVN CPLYIVHVMS REMARK 999 KSAAKVIADA RRDGKVVYGE PIAASLGTDG THYWNKEWHH AAHHVMGPPL REMARK 999 RPDPSTPDFL MNLLANDDLT TTGTDNCTFN TCQKALGKDD FTKIPNGVNG REMARK 999 VEDRMSVIWE KGVHSGKMDE NRFVAVTSTN AAKIFNLYPR KGRIAVGSDA REMARK 999 DIVIWDPKGT RTISAKTHHQ AVNFNIFEGM VCHGVPLVTI SRGKVVYEAG REMARK 999 VFSVTAGDGK FIPRKPFAEY IYKRIKQRDR TCTPTPVERA PYKGEVATL DBREF 2VR2 A -21 0 PDB 2VR2 2VR2 -21 0 DBREF 2VR2 A 1 519 UNP Q14117 DPYS_HUMAN 1 519 SEQRES 1 A 541 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 541 GLY THR GLU ASN LEU TYR PHE GLN SER MET ALA ALA PRO SEQRES 3 A 541 SER ARG LEU LEU ILE ARG GLY GLY ARG VAL VAL ASN ASP SEQRES 4 A 541 ASP PHE SER GLU VAL ALA ASP VAL LEU VAL GLU ASP GLY SEQRES 5 A 541 VAL VAL ARG ALA LEU GLY HIS ASP LEU LEU PRO PRO GLY SEQRES 6 A 541 GLY ALA PRO ALA GLY LEU ARG VAL LEU ASP ALA ALA GLY SEQRES 7 A 541 LYS LEU VAL LEU PRO GLY GLY ILE ASP THR HIS THR HIS SEQRES 8 A 541 MET GLN PHE PRO PHE MET GLY SER ARG SER ILE ASP ASP SEQRES 9 A 541 PHE HIS GLN GLY THR LYS ALA ALA LEU SER GLY GLY THR SEQRES 10 A 541 THR MET ILE ILE ASP PHE ALA ILE PRO GLN LYS GLY GLY SEQRES 11 A 541 SER LEU ILE GLU ALA PHE GLU THR TRP ARG SER TRP ALA SEQRES 12 A 541 ASP PRO LYS VAL CYS CYS ASP TYR SER LEU HIS VAL ALA SEQRES 13 A 541 VAL THR TRP TRP SER ASP GLN VAL LYS GLU GLU MET LYS SEQRES 14 A 541 ILE LEU VAL GLN ASP LYS GLY VAL ASN SER PHE LYS MET SEQRES 15 A 541 PHE MET ALA TYR LYS ASP LEU TYR MET VAL THR ASP LEU SEQRES 16 A 541 GLU LEU TYR GLU ALA PHE SER ARG CYS LYS GLU ILE GLY SEQRES 17 A 541 ALA ILE ALA GLN VAL HIS ALA GLU ASN GLY ASP LEU ILE SEQRES 18 A 541 ALA GLU GLY ALA LYS LYS MET LEU ALA LEU GLY ILE THR SEQRES 19 A 541 GLY PRO GLU GLY HIS GLU LEU CYS ARG PRO GLU ALA VAL SEQRES 20 A 541 GLU ALA GLU ALA THR LEU ARG ALA ILE THR ILE ALA SER SEQRES 21 A 541 ALA VAL ASN CYS PRO LEU TYR ILE VAL HIS VAL MET SER SEQRES 22 A 541 LYS SER ALA ALA LYS VAL ILE ALA ASP ALA ARG ARG ASP SEQRES 23 A 541 GLY LYS VAL VAL TYR GLY GLU PRO ILE ALA ALA SER LEU SEQRES 24 A 541 GLY THR ASP GLY THR HIS TYR TRP ASN LYS GLU TRP HIS SEQRES 25 A 541 HIS ALA ALA HIS HIS VAL MET GLY PRO PRO LEU ARG PRO SEQRES 26 A 541 ASP PRO SER THR PRO ASP PHE LEU MET ASN LEU LEU ALA SEQRES 27 A 541 ASN ASP ASP LEU THR THR THR GLY THR ASP ASN CYS THR SEQRES 28 A 541 PHE ASN THR CYS GLN LYS ALA LEU GLY LYS ASP ASP PHE SEQRES 29 A 541 THR LYS ILE PRO ASN GLY VAL ASN GLY VAL GLU ASP ARG SEQRES 30 A 541 MET SER VAL ILE TRP GLU LYS GLY VAL HIS SER GLY LYS SEQRES 31 A 541 MET ASP GLU ASN ARG PHE VAL ALA VAL THR SER THR ASN SEQRES 32 A 541 ALA ALA LYS ILE PHE ASN LEU TYR PRO ARG LYS GLY ARG SEQRES 33 A 541 ILE ALA VAL GLY SER ASP ALA ASP ILE VAL ILE TRP ASP SEQRES 34 A 541 PRO LYS GLY THR ARG THR ILE SER ALA LYS THR HIS HIS SEQRES 35 A 541 GLN ALA VAL ASN PHE ASN ILE PHE GLU GLY MET VAL CYS SEQRES 36 A 541 HIS GLY VAL PRO LEU VAL THR ILE SER ARG GLY LYS VAL SEQRES 37 A 541 VAL TYR GLU ALA GLY VAL PHE SER VAL THR ALA GLY ASP SEQRES 38 A 541 GLY LYS PHE ILE PRO ARG LYS PRO PHE ALA GLU TYR ILE SEQRES 39 A 541 TYR LYS ARG ILE LYS GLN ARG ASP ARG THR CYS THR PRO SEQRES 40 A 541 THR PRO VAL GLU ARG ALA PRO TYR LYS GLY GLU VAL ALA SEQRES 41 A 541 THR LEU LYS SER ARG VAL THR LYS GLU ASP ALA THR ALA SEQRES 42 A 541 GLY THR ARG LYS GLN ALA HIS PRO HET ZN A1494 1 HET ZN A1495 1 HET CL A1496 1 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 CL CL 1- FORMUL 5 HOH *(H2 O) HELIX 1 1 HIS A 84 SER A 92 1 9 HELIX 2 2 SER A 109 ASP A 122 1 14 HELIX 3 3 SER A 139 ASP A 152 1 14 HELIX 4 4 THR A 171 GLY A 186 1 16 HELIX 5 5 ASN A 195 LEU A 209 1 15 HELIX 6 6 PRO A 214 CYS A 220 1 7 HELIX 7 7 PRO A 222 ASN A 241 1 20 HELIX 8 8 SER A 251 ASP A 264 1 14 HELIX 9 9 ILE A 273 THR A 279 1 7 HELIX 10 10 GLY A 281 ASN A 286 5 6 HELIX 11 11 GLU A 288 HIS A 294 1 7 HELIX 12 12 SER A 306 ASN A 317 1 12 HELIX 13 13 ASN A 331 ALA A 336 1 6 HELIX 14 14 LEU A 337 LYS A 339 5 3 HELIX 15 15 ASP A 341 ILE A 345 5 5 HELIX 16 16 ASP A 354 VAL A 364 1 11 HELIX 17 17 ASP A 370 SER A 379 1 10 HELIX 18 18 SER A 379 PHE A 386 1 8 HELIX 19 19 ALA A 469 CYS A 483 1 15 SHEET 1 AA 4 VAL A 31 GLY A 36 0 SHEET 2 AA 4 ASP A 24 GLU A 28 -1 O ASP A 24 N GLY A 36 SHEET 3 AA 4 ARG A 6 ARG A 10 -1 O LEU A 7 N VAL A 27 SHEET 4 AA 4 ARG A 50 ASP A 53 1 O ARG A 50 N LEU A 8 SHEET 1 AB 7 SER A 20 VAL A 22 0 SHEET 2 AB 7 ARG A 13 VAL A 15 -1 O VAL A 14 N GLU A 21 SHEET 3 AB 7 LEU A 58 PRO A 61 1 O VAL A 59 N VAL A 15 SHEET 4 AB 7 ILE A 403 THR A 413 -1 O VAL A 404 N LEU A 60 SHEET 5 AB 7 VAL A 432 SER A 442 -1 O CYS A 433 N ARG A 412 SHEET 6 AB 7 LYS A 445 GLU A 449 -1 O LYS A 445 N SER A 442 SHEET 7 AB 7 VAL A 452 PHE A 453 -1 O VAL A 452 N GLU A 449 SHEET 1 AC 7 GLY A 63 THR A 68 0 SHEET 2 AC 7 THR A 95 ALA A 102 1 N THR A 96 O GLY A 63 SHEET 3 AC 7 ASP A 128 VAL A 135 1 O ASP A 128 N ILE A 98 SHEET 4 AC 7 SER A 157 PHE A 161 1 O SER A 157 N VAL A 133 SHEET 5 AC 7 ILE A 188 HIS A 192 1 O ILE A 188 N PHE A 158 SHEET 6 AC 7 LEU A 244 VAL A 249 1 O TYR A 245 N VAL A 191 SHEET 7 AC 7 VAL A 268 PRO A 272 1 O TYR A 269 N ILE A 246 LINK NE2 HIS A 67 ZN ZN A1494 1555 1555 2.09 LINK NE2 HIS A 69 ZN ZN A1494 1555 1555 2.21 LINK NE2 HIS A 248 ZN ZN A1495 1555 1555 2.21 LINK OD1 ASP A 326 ZN ZN A1494 1555 1555 2.27 CISPEP 1 GLY A 298 PRO A 299 0 -3.85 CISPEP 2 TYR A 389 PRO A 390 0 0.42 SITE 1 AC1 6 HIS A 67 HIS A 69 LYS A 159 ASP A 326 SITE 2 AC1 6 ZN A1495 HOH A2001 SITE 1 AC2 4 LYS A 159 HIS A 192 HIS A 248 ZN A1494 SITE 1 AC3 1 LYS A 88 CRYST1 89.650 89.650 219.100 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011154 0.006440 0.000000 0.00000 SCALE2 0.000000 0.012880 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004564 0.00000