HEADER TRANSPORT 04-APR-08 2VRG TITLE STRUCTURE OF HUMAN MCFD2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MULTIPLE COAGULATION FACTOR DEFICIENCY PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NEURAL STEM CELL-DERIVED NEURONAL SURVIVAL PROTEIN, MCFD2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS ER-GOLGI TRANSPORT, GLYCOPROTEIN SORTING, DISEASE MUTATION, SECRETORY KEYWDS 2 PATHWAY, PROTEIN TRANSPORT, ER, EF-HAND, CALCIUM, TRANSPORT, GOLGI KEYWDS 3 APPARATUS, ENDOPLASMIC RETICULUM, COAGULATION FACTOR DEFICIENCY EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.E.GUY,E.WIGREN,M.SVARD,T.HARD,Y.LINDQVIST REVDAT 5 15-MAY-24 2VRG 1 REMARK REVDAT 4 07-FEB-18 2VRG 1 SOURCE JRNL REMARK REVDAT 3 24-FEB-09 2VRG 1 VERSN REVDAT 2 19-AUG-08 2VRG 1 JRNL REVDAT 1 15-JUL-08 2VRG 0 JRNL AUTH J.E.GUY,E.WIGREN,M.SVARD,T.HARD,Y.LINDQVIST JRNL TITL NEW INSIGHTS INTO MULTIPLE COAGULATION FACTOR DEFICIENCY JRNL TITL 2 FROM THE SOLUTION STRUCTURE OF HUMAN MCFD2. JRNL REF J. MOL. BIOL. V. 381 941 2008 JRNL REFN ESSN 1089-8638 JRNL PMID 18590741 JRNL DOI 10.1016/J.JMB.2008.06.042 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : NILGES, RIEPING, HABECK, BARDIAUX, BERNARD, REMARK 3 MALLIAVIN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE REMARK 4 REMARK 4 2VRG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-APR-08. REMARK 100 THE DEPOSITION ID IS D_1290035857. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0; 298.0 REMARK 210 PH : 6.0; 6.0 REMARK 210 IONIC STRENGTH : 1 MM MES; 1 MM MES REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 90% WATER, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N HSQC; 13C HSQC; 3D HNCO; 3D REMARK 210 CBCANH; 3D CBCA(CO)NH; 3D 15N- REMARK 210 EDITED TOCSY- HSQC; 3D 15N- REMARK 210 EDITED NOESY- HSQC; 3D HCCH-COSY; REMARK 210 3D 13C- EDITED NOESY; 2D (HB) REMARK 210 CB(CGCDCE)HE; 3D 15N-EDITED REMARK 210 NOESY-HSQC; 3D 13C-EDITED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, CCPNMR ANALYSIS REMARK 210 ANALYSIS, TALOS, ARIA REMARK 210 METHOD USED : AB INITIO SIMULATED ANNEALING IN REMARK 210 ARIA2 REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TOTAL ENERGY AND RESTRAINT REMARK 210 VIOLATION STATISTICS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 2 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED MCFD2 REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 HIS A 25 REMARK 465 MET A 26 REMARK 465 GLU A 27 REMARK 465 GLU A 28 REMARK 465 PRO A 29 REMARK 465 ALA A 30 REMARK 465 ALA A 31 REMARK 465 SER A 32 REMARK 465 PHE A 33 REMARK 465 SER A 34 REMARK 465 GLN A 35 REMARK 465 PRO A 36 REMARK 465 GLY A 37 REMARK 465 SER A 38 REMARK 465 MET A 39 REMARK 465 GLY A 40 REMARK 465 LEU A 41 REMARK 465 ASP A 42 REMARK 465 LYS A 43 REMARK 465 ASN A 44 REMARK 465 THR A 45 REMARK 465 VAL A 46 REMARK 465 HIS A 47 REMARK 465 ASP A 48 REMARK 465 GLN A 49 REMARK 465 GLU A 50 REMARK 465 HIS A 51 REMARK 465 ILE A 52 REMARK 465 MET A 53 REMARK 465 GLU A 54 REMARK 465 HIS A 55 REMARK 465 LEU A 56 REMARK 465 GLU A 57 REMARK 465 GLY A 58 REMARK 465 VAL A 59 REMARK 465 ILE A 60 REMARK 465 ASN A 61 REMARK 465 LYS A 62 REMARK 465 PRO A 63 REMARK 465 GLU A 64 REMARK 465 ALA A 65 REMARK 465 GLU A 66 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ PHE A 77 HA ASN A 86 1.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 103 -74.52 -107.24 REMARK 500 1 GLU A 104 46.71 -106.88 REMARK 500 1 SER A 106 -80.16 -106.42 REMARK 500 1 LEU A 111 83.47 -58.71 REMARK 500 1 SER A 113 119.15 -161.38 REMARK 500 2 HIS A 80 10.21 -144.74 REMARK 500 2 LEU A 111 78.97 -63.21 REMARK 500 3 LYS A 102 77.02 -69.13 REMARK 500 3 SER A 106 -67.90 -153.31 REMARK 500 3 LEU A 111 79.03 -62.94 REMARK 500 4 HIS A 80 11.49 -146.50 REMARK 500 4 GLU A 103 -87.18 -162.64 REMARK 500 4 SER A 106 -37.27 -136.40 REMARK 500 4 LEU A 111 78.93 -61.07 REMARK 500 4 ASP A 127 -43.28 -136.50 REMARK 500 5 GLU A 103 -75.36 -140.20 REMARK 500 5 SER A 106 -77.57 -155.51 REMARK 500 5 LEU A 111 76.15 -62.67 REMARK 500 5 SER A 113 117.49 -163.04 REMARK 500 6 HIS A 80 9.56 -157.93 REMARK 500 6 GLU A 103 -63.45 -123.22 REMARK 500 6 PRO A 110 60.58 -69.86 REMARK 500 6 LEU A 111 77.53 -69.49 REMARK 500 7 HIS A 80 11.14 -143.04 REMARK 500 7 GLU A 103 -46.91 -165.58 REMARK 500 7 GLU A 104 42.28 -95.49 REMARK 500 7 SER A 106 -78.84 -146.19 REMARK 500 7 LEU A 111 89.63 -56.40 REMARK 500 8 GLU A 103 -76.41 -142.12 REMARK 500 8 SER A 106 -84.48 -97.06 REMARK 500 8 LEU A 111 74.67 -66.07 REMARK 500 9 GLU A 103 -74.79 -162.14 REMARK 500 9 SER A 106 -84.99 -139.37 REMARK 500 9 LEU A 111 80.23 -59.63 REMARK 500 10 SER A 106 -84.14 -131.28 REMARK 500 10 LEU A 111 84.25 -59.00 REMARK 500 10 SER A 113 118.72 -162.09 REMARK 500 10 ASP A 127 -48.90 -134.36 REMARK 500 11 GLU A 103 -66.56 -154.31 REMARK 500 11 SER A 106 -75.07 -73.67 REMARK 500 12 HIS A 80 10.06 -141.06 REMARK 500 12 HIS A 101 81.18 -69.23 REMARK 500 12 GLU A 103 -67.85 -144.88 REMARK 500 12 LEU A 111 79.61 -65.22 REMARK 500 13 GLU A 103 -80.53 -140.70 REMARK 500 13 SER A 106 -61.23 -95.02 REMARK 500 13 LEU A 111 93.40 -51.10 REMARK 500 13 SER A 113 118.28 -160.74 REMARK 500 14 HIS A 101 93.99 -66.05 REMARK 500 14 GLU A 103 -67.98 179.00 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1148 REMARK 999 REMARK 999 SEQUENCE REMARK 999 DEPOSITED SEQUENCE INCLUDES SIGNAL SEQUENCE, OUR CONSTRUCT REMARK 999 CORRESPONDS TO MATURE MCFD2 (AND THE REMAINS OF AN N- REMARK 999 TERMINAL THROMBIN CLEAVAGE SITE) DBREF 2VRG A 23 26 PDB 2VRG 2VRG 23 26 DBREF 2VRG A 27 146 UNP Q8NI22 MCFD2_HUMAN 27 146 SEQRES 1 A 124 GLY SER HIS MET GLU GLU PRO ALA ALA SER PHE SER GLN SEQRES 2 A 124 PRO GLY SER MET GLY LEU ASP LYS ASN THR VAL HIS ASP SEQRES 3 A 124 GLN GLU HIS ILE MET GLU HIS LEU GLU GLY VAL ILE ASN SEQRES 4 A 124 LYS PRO GLU ALA GLU MET SER PRO GLN GLU LEU GLN LEU SEQRES 5 A 124 HIS TYR PHE LYS MET HIS ASP TYR ASP GLY ASN ASN LEU SEQRES 6 A 124 LEU ASP GLY LEU GLU LEU SER THR ALA ILE THR HIS VAL SEQRES 7 A 124 HIS LYS GLU GLU GLY SER GLU GLN ALA PRO LEU MET SER SEQRES 8 A 124 GLU ASP GLU LEU ILE ASN ILE ILE ASP GLY VAL LEU ARG SEQRES 9 A 124 ASP ASP ASP LYS ASN ASN ASP GLY TYR ILE ASP TYR ALA SEQRES 10 A 124 GLU PHE ALA LYS SER LEU GLN HET CA A1147 1 HET CA A1148 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) HELIX 1 1 SER A 68 MET A 79 1 12 HELIX 2 2 ASP A 89 HIS A 101 1 13 HELIX 3 3 SER A 113 ASP A 127 1 15 HELIX 4 4 ASP A 137 GLN A 146 1 10 SITE 1 AC1 5 ASP A 81 ASP A 83 ASN A 85 LEU A 87 SITE 2 AC1 5 GLU A 92 SITE 1 AC2 5 ASP A 129 ASN A 131 ASP A 133 TYR A 135 SITE 2 AC2 5 GLU A 140 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1