HEADER OXYGEN STORAGE/TRANSPORT 16-APR-08 2VRY TITLE MOUSE NEUROGLOBIN WITH HEME IRON IN THE REDUCED FERROUS STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUROGLOBIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: THE PROTEIN CONTAINS THREE ADDITIONAL AMINO ACIDS AT COMPND 7 THE N TERM GLY, SER, HIS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: FVB/N; SOURCE 6 ORGAN: BRAIN; SOURCE 7 CELL: NEURONS; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS OXYGEN STORAGE-TRANSPORT COMPLEX, METAL- BINDING, PHOTOREDUCTION, KEYWDS 2 OXYGEN TRANSPORT, IRON, HEME, FERROUS, TRANSPORT, NEUROGLOBIN, KEYWDS 3 GLOBIN FOLD, HEME PROTEIN, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.ARCOVITO,T.MOSCHETTI,P.D'ANGELO,G.MANCINI,B.VALLONE,M.BRUNORI, AUTHOR 2 S.DELLA LONGA REVDAT 6 13-DEC-23 2VRY 1 REMARK LINK REVDAT 5 06-MAR-19 2VRY 1 REMARK REVDAT 4 22-OCT-14 2VRY 1 JRNL REVDAT 3 13-JUL-11 2VRY 1 VERSN REVDAT 2 24-FEB-09 2VRY 1 VERSN REVDAT 1 06-MAY-08 2VRY 0 JRNL AUTH A.ARCOVITO,T.MOSCHETTI,P.D'ANGELO,G.MANCINI,B.VALLONE, JRNL AUTH 2 M.BRUNORI,S.DELLA LONGA JRNL TITL AN X-RAY DIFFRACTION AND X-RAY ABSORPTION SPECTROSCOPY JOINT JRNL TITL 2 STUDY OF NEUROGLOBIN. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 475 7 2008 JRNL REFN ISSN 0003-9861 JRNL PMID 18406335 JRNL DOI 10.1016/J.ABB.2008.03.026 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 13093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 692 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 746 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1134 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 74 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 29.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : -0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.392 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1308 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1814 ; 1.521 ; 2.175 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 155 ; 4.574 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 47 ;29.948 ;22.979 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 203 ;14.465 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;13.175 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 188 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 984 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 668 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 896 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 75 ; 0.202 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 64 ; 0.201 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.449 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 768 ; 0.842 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1220 ; 1.393 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 628 ; 2.168 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 585 ; 2.947 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7220 47.4060 33.5430 REMARK 3 T TENSOR REMARK 3 T11: -0.0170 T22: -0.0399 REMARK 3 T33: -0.0028 T12: -0.0439 REMARK 3 T13: -0.1110 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 1.4932 L22: 3.0479 REMARK 3 L33: 2.0052 L12: 0.3525 REMARK 3 L13: 0.0345 L23: -0.5283 REMARK 3 S TENSOR REMARK 3 S11: 0.1193 S12: -0.1752 S13: -0.1993 REMARK 3 S21: 0.4991 S22: -0.1752 S23: -0.4767 REMARK 3 S31: 0.0952 S32: 0.0764 S33: 0.0559 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. STRUCTURE OF UNLIGANDED NEUROGLOBIN, WITH REDUCED REMARK 3 HEME IRON STATE (FERROUS). REMARK 4 REMARK 4 2VRY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-APR-08. REMARK 100 THE DEPOSITION ID IS D_1290035916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12881 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 1Q1F REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 0.1 MMES, PH REMARK 280 6.5, 10% V/V DIOXANE, 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 43.96000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.38032 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 37.88200 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 43.96000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 25.38032 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 37.88200 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 43.96000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 25.38032 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 37.88200 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 43.96000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 25.38032 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 37.88200 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 43.96000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 25.38032 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 37.88200 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 43.96000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 25.38032 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 37.88200 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 50.76064 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 75.76400 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 50.76064 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 75.76400 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 50.76064 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 75.76400 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 50.76064 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 75.76400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 50.76064 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 75.76400 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 50.76064 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 75.76400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 12800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 43.96000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 76.14095 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -43.96000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 76.14095 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 -43.96000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 25.38032 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 37.88200 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 101.52127 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 37.88200 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 43.96000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 25.38032 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 37.88200 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2008 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2009 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2035 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 55 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 120 TO SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 150 REMARK 465 GLU A 151 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 3 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 5 CD OE1 OE2 REMARK 470 ARG A 10 CZ NH1 NH2 REMARK 470 ARG A 14 NE CZ NH1 NH2 REMARK 470 GLN A 43 OE1 NE2 REMARK 470 GLU A 86 CD OE1 OE2 REMARK 470 ARG A 94 CD NE CZ NH1 NH2 REMARK 470 ARG A 130 CZ NH1 NH2 REMARK 470 ARG A 146 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 81 93.91 -162.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 PROTOPORPHYRIN IX CONTAINING FE (HEM): THE HEME IRON IS IN REMARK 600 THE REDUCED FERROUS STATE REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1150 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 64 NE2 REMARK 620 2 HEM A1150 NA 82.7 REMARK 620 3 HEM A1150 NB 102.9 90.8 REMARK 620 4 HEM A1150 NC 100.8 176.0 90.2 REMARK 620 5 HEM A1150 ND 83.3 88.6 173.6 90.0 REMARK 620 6 HIS A 96 NE2 167.8 86.0 72.6 90.6 101.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A1150 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 64 NE2 REMARK 620 2 HEM A1150 NA 85.2 REMARK 620 3 HEM A1150 NB 89.6 89.0 REMARK 620 4 HEM A1150 NC 99.6 175.2 90.9 REMARK 620 5 HEM A1150 ND 95.4 90.1 174.9 89.5 REMARK 620 6 HIS A 96 NE2 164.5 84.3 78.9 91.0 96.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 1150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1152 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q1F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MURINE NEUROGLOBIN REMARK 900 RELATED ID: 1W92 RELATED DB: PDB REMARK 900 THE STRUCTURE OF CARBOMONOXY MURINE NEUROGLOBIN REVEALS A HEME- REMARK 900 SLIDING MECHANISM FOR AFFINITY REGULATION DBREF 2VRY A -2 0 PDB 2VRY 2VRY -2 0 DBREF 2VRY A 1 151 UNP Q9ER97 NGB_MOUSE 1 151 SEQADV 2VRY SER A 55 UNP Q9ER97 CYS 55 ENGINEERED MUTATION SEQADV 2VRY SER A 120 UNP Q9ER97 CYS 120 ENGINEERED MUTATION SEQRES 1 A 154 GLY SER HIS MET GLU ARG PRO GLU SER GLU LEU ILE ARG SEQRES 2 A 154 GLN SER TRP ARG VAL VAL SER ARG SER PRO LEU GLU HIS SEQRES 3 A 154 GLY THR VAL LEU PHE ALA ARG LEU PHE ALA LEU GLU PRO SEQRES 4 A 154 SER LEU LEU PRO LEU PHE GLN TYR ASN GLY ARG GLN PHE SEQRES 5 A 154 SER SER PRO GLU ASP SER LEU SER SER PRO GLU PHE LEU SEQRES 6 A 154 ASP HIS ILE ARG LYS VAL MET LEU VAL ILE ASP ALA ALA SEQRES 7 A 154 VAL THR ASN VAL GLU ASP LEU SER SER LEU GLU GLU TYR SEQRES 8 A 154 LEU THR SER LEU GLY ARG LYS HIS ARG ALA VAL GLY VAL SEQRES 9 A 154 ARG LEU SER SER PHE SER THR VAL GLY GLU SER LEU LEU SEQRES 10 A 154 TYR MET LEU GLU LYS SER LEU GLY PRO ASP PHE THR PRO SEQRES 11 A 154 ALA THR ARG THR ALA TRP SER ARG LEU TYR GLY ALA VAL SEQRES 12 A 154 VAL GLN ALA MET SER ARG GLY TRP ASP GLY GLU HET HEM A1150 86 HET SO4 A1151 5 HET SO4 A1152 5 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM SO4 SULFATE ION HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *74(H2 O) HELIX 1 1 PRO A 4 ARG A 18 1 15 HELIX 2 2 SER A 19 GLU A 35 1 17 HELIX 3 3 PRO A 36 PHE A 42 5 7 HELIX 4 4 SER A 51 LEU A 56 1 6 HELIX 5 5 SER A 58 ASN A 78 1 21 HELIX 6 6 ASP A 81 SER A 84 5 4 HELIX 7 7 LEU A 85 GLY A 100 1 16 HELIX 8 8 SER A 104 GLY A 122 1 19 HELIX 9 9 PRO A 123 PHE A 125 5 3 HELIX 10 10 THR A 126 ARG A 146 1 21 HELIX 11 11 GLY A 147 ASP A 149 5 3 LINK NE2BHIS A 64 FE BHEM A1150 1555 1555 2.25 LINK NE2AHIS A 64 FE AHEM A1150 1555 1555 1.88 LINK NE2BHIS A 96 FE BHEM A1150 1555 1555 1.74 LINK NE2AHIS A 96 FE AHEM A1150 1555 1555 2.35 SITE 1 AC1 13 LEU A 41 PHE A 42 TYR A 44 HIS A 64 SITE 2 AC1 13 LYS A 67 VAL A 68 VAL A 71 TYR A 88 SITE 3 AC1 13 HIS A 96 VAL A 109 HOH A2070 HOH A2072 SITE 4 AC1 13 HOH A2073 SITE 1 AC2 6 SER A 19 PRO A 20 LEU A 21 GLU A 22 SITE 2 AC2 6 ARG A 66 HOH A2074 SITE 1 AC3 6 LEU A 21 GLU A 22 PRO A 59 LEU A 62 SITE 2 AC3 6 ASP A 63 ARG A 66 CRYST1 87.920 87.920 113.646 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011374 0.006567 0.000000 0.00000 SCALE2 0.000000 0.013134 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008799 0.00000