HEADER HYDROLASE 21-APR-08 2VS6 TITLE K173A, R174A, K177A-TRICHOSANTHIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOME-INACTIVATING PROTEIN ALPHA-TRICHOSANTHIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RRNA N-GLYCOSIDASE, ALPHA-TCS, TRICHOSANTHIN MUTANT K173A, COMPND 5 R174A AND K177A; COMPND 6 EC: 3.2.2.22; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHOSANTHES KIRILOWII; SOURCE 3 ORGANISM_COMMON: MONGOLIAN SNAKE-GOURD; SOURCE 4 ORGANISM_TAXID: 3677; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ANTIVIRAL PROTEIN, PROTEIN SYNTHESIS INHIBITOR, TCS, TOXIN, KEYWDS 2 HYDROLASE, PLANT DEFENSE EXPDTA X-RAY DIFFRACTION AUTHOR P.H.TOO,M.K.MA,A.N.MAK,C.K.TUNG,G.ZHU,S.W.AU,K.B.WONG,P.C.SHAW,A.NG REVDAT 5 13-DEC-23 2VS6 1 REMARK REVDAT 4 28-JUN-17 2VS6 1 REMARK REVDAT 3 01-SEP-09 2VS6 1 REMARK REVDAT 2 10-FEB-09 2VS6 1 JRNL REMARK REVDAT 1 30-DEC-08 2VS6 0 JRNL AUTH P.H.TOO,M.K.MA,A.N.MAK,Y.T.WONG,C.K.TUNG,G.ZHU,S.W.AU, JRNL AUTH 2 K.B.WONG,P.C.SHAW JRNL TITL THE C-TERMINAL FRAGMENT OF THE RIBOSOMAL P PROTEIN COMPLEXED JRNL TITL 2 TO TRICHOSANTHIN REVEALS THE INTERACTION BETWEEN THE JRNL TITL 3 RIBOSOME-INACTIVATING PROTEIN AND THE RIBOSOME. JRNL REF NUCLEIC ACIDS RES. V. 37 602 2009 JRNL REFN ISSN 0305-1048 JRNL PMID 19073700 JRNL DOI 10.1093/NAR/GKN922 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 27335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1373 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3803 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 381 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.78200 REMARK 3 B22 (A**2) : 2.22800 REMARK 3 B33 (A**2) : -5.00900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VS6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-APR-08. REMARK 100 THE DEPOSITION ID IS D_1290035924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27383 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 31.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOSFLM REMARK 200 STARTING MODEL: PDB ENTRY 1TCS REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.01250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.91600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.92000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.91600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.01250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.92000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LYS 196 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ARG 197 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LYS 200 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, LYS 196 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ARG 197 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, LYS 200 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 247 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 243 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB ASN A 68 C MET A 246 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 0 CA MET A 0 CB -0.166 REMARK 500 MET A 0 C MET A 0 O -0.128 REMARK 500 MET A 246 CA MET A 246 C 5.201 REMARK 500 MET A 246 C MET A 246 O 6.678 REMARK 500 MET B 0 N MET B 0 CA -0.163 REMARK 500 MET B 0 CA MET B 0 C -0.159 REMARK 500 MET B 0 C MET B 0 O -0.160 REMARK 500 MET B 246 N MET B 246 CA -0.130 REMARK 500 MET B 246 CB MET B 246 CG -0.217 REMARK 500 MET B 246 CA MET B 246 C -0.162 REMARK 500 MET B 246 C MET B 246 O -0.263 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 1 O - C - N ANGL. DEV. = -10.3 DEGREES REMARK 500 MET A 246 N - CA - C ANGL. DEV. = -36.8 DEGREES REMARK 500 MET A 246 CA - C - O ANGL. DEV. = 106.8 DEGREES REMARK 500 MET B 0 CG - SD - CE ANGL. DEV. = 15.3 DEGREES REMARK 500 MET B 246 CB - CG - SD ANGL. DEV. = -21.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 142 77.22 43.70 REMARK 500 THR A 158 -79.14 -120.32 REMARK 500 SER A 235 46.01 -143.37 REMARK 500 ASN A 236 -72.99 -152.08 REMARK 500 ARG B 29 -170.26 171.32 REMARK 500 PRO B 106 28.03 -74.11 REMARK 500 TYR B 142 66.67 39.89 REMARK 500 THR B 158 -82.21 -118.46 REMARK 500 ASN B 236 -78.21 -130.34 REMARK 500 MET B 246 -101.35 124.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 1 -17.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MRK RELATED DB: PDB REMARK 900 ALPHA-TRICHOSANTHIN COMPLEXED WITH FORMYCIN REMARK 900 RELATED ID: 1GIU RELATED DB: PDB REMARK 900 A TRICHOSANTHIN(TCS) MUTANT(E85R) COMPLEX STRUCTURE WITHADENINE REMARK 900 RELATED ID: 1MRJ RELATED DB: PDB REMARK 900 ALPHA-TRICHOSANTHIN COMPLEXED WITH ADENINE REMARK 900 RELATED ID: 2JDL RELATED DB: PDB REMARK 900 STRUCTURE OF C-TERMINAL REGION OF ACIDIC P2 RIBOSOMAL PROTEIN REMARK 900 COMPLEXED WITH TRICHOSANTHIN REMARK 900 RELATED ID: 1TCS RELATED DB: PDB REMARK 900 TRICHOSANTHIN COMPLEXED WITH NADPH REMARK 900 RELATED ID: 1GIS RELATED DB: PDB REMARK 900 A TRICHOSANTHIN(TCS) MUTANT(E85Q) COMPLEX STRUCTURE WITH 2'-DEOXY- REMARK 900 ADENOSIN-5'- MONOPHOSPHATE REMARK 900 RELATED ID: 1NLI RELATED DB: PDB REMARK 900 COMPLEX OF [E160A-E189A] TRICHOSANTHIN AND ADENINE REMARK 900 RELATED ID: 1J4G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF THE TRICHOSANTHIN DELTA C7 REMARK 900 RELATED ID: 1QD2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX OF TRICHOSANTHIN WITH ADENINE, REMARK 900 OBTAINED FROM TRICHOSANTHIN COMPLEXED WITH THE DINUCLEOTIDE APG REMARK 900 RELATED ID: 2JJR RELATED DB: PDB REMARK 900 V232K, N236D-TRICHOSANTHIN DBREF 2VS6 A 0 0 PDB 2VS6 2VS6 0 0 DBREF 2VS6 A 1 247 UNP P09989 RIPT_TRIKI 24 270 DBREF 2VS6 B 0 0 PDB 2VS6 2VS6 0 0 DBREF 2VS6 B 1 247 UNP P09989 RIPT_TRIKI 24 270 SEQADV 2VS6 ALA A 173 UNP P09989 LYS 196 ENGINEERED MUTATION SEQADV 2VS6 ALA A 174 UNP P09989 ARG 197 ENGINEERED MUTATION SEQADV 2VS6 ALA A 177 UNP P09989 LYS 200 ENGINEERED MUTATION SEQADV 2VS6 ALA B 173 UNP P09989 LYS 196 ENGINEERED MUTATION SEQADV 2VS6 ALA B 174 UNP P09989 ARG 197 ENGINEERED MUTATION SEQADV 2VS6 ALA B 177 UNP P09989 LYS 200 ENGINEERED MUTATION SEQRES 1 A 248 MET ASP VAL SER PHE ARG LEU SER GLY ALA THR SER SER SEQRES 2 A 248 SER TYR GLY VAL PHE ILE SER ASN LEU ARG LYS ALA LEU SEQRES 3 A 248 PRO ASN GLU ARG LYS LEU TYR ASP ILE PRO LEU LEU ARG SEQRES 4 A 248 SER SER LEU PRO GLY SER GLN ARG TYR ALA LEU ILE HIS SEQRES 5 A 248 LEU THR ASN TYR ALA ASP GLU THR ILE SER VAL ALA ILE SEQRES 6 A 248 ASP VAL THR ASN VAL TYR ILE MET GLY TYR ARG ALA GLY SEQRES 7 A 248 ASP THR SER TYR PHE PHE ASN GLU ALA SER ALA THR GLU SEQRES 8 A 248 ALA ALA LYS TYR VAL PHE LYS ASP ALA MET ARG LYS VAL SEQRES 9 A 248 THR LEU PRO TYR SER GLY ASN TYR GLU ARG LEU GLN THR SEQRES 10 A 248 ALA ALA GLY LYS ILE ARG GLU ASN ILE PRO LEU GLY LEU SEQRES 11 A 248 PRO ALA LEU ASP SER ALA ILE THR THR LEU PHE TYR TYR SEQRES 12 A 248 ASN ALA ASN SER ALA ALA SER ALA LEU MET VAL LEU ILE SEQRES 13 A 248 GLN SER THR SER GLU ALA ALA ARG TYR LYS PHE ILE GLU SEQRES 14 A 248 GLN GLN ILE GLY ALA ALA VAL ASP ALA THR PHE LEU PRO SEQRES 15 A 248 SER LEU ALA ILE ILE SER LEU GLU ASN SER TRP SER ALA SEQRES 16 A 248 LEU SER LYS GLN ILE GLN ILE ALA SER THR ASN ASN GLY SEQRES 17 A 248 GLN PHE GLU SER PRO VAL VAL LEU ILE ASN ALA GLN ASN SEQRES 18 A 248 GLN ARG VAL THR ILE THR ASN VAL ASP ALA GLY VAL VAL SEQRES 19 A 248 THR SER ASN ILE ALA LEU LEU LEU ASN ARG ASN ASN MET SEQRES 20 A 248 ALA SEQRES 1 B 248 MET ASP VAL SER PHE ARG LEU SER GLY ALA THR SER SER SEQRES 2 B 248 SER TYR GLY VAL PHE ILE SER ASN LEU ARG LYS ALA LEU SEQRES 3 B 248 PRO ASN GLU ARG LYS LEU TYR ASP ILE PRO LEU LEU ARG SEQRES 4 B 248 SER SER LEU PRO GLY SER GLN ARG TYR ALA LEU ILE HIS SEQRES 5 B 248 LEU THR ASN TYR ALA ASP GLU THR ILE SER VAL ALA ILE SEQRES 6 B 248 ASP VAL THR ASN VAL TYR ILE MET GLY TYR ARG ALA GLY SEQRES 7 B 248 ASP THR SER TYR PHE PHE ASN GLU ALA SER ALA THR GLU SEQRES 8 B 248 ALA ALA LYS TYR VAL PHE LYS ASP ALA MET ARG LYS VAL SEQRES 9 B 248 THR LEU PRO TYR SER GLY ASN TYR GLU ARG LEU GLN THR SEQRES 10 B 248 ALA ALA GLY LYS ILE ARG GLU ASN ILE PRO LEU GLY LEU SEQRES 11 B 248 PRO ALA LEU ASP SER ALA ILE THR THR LEU PHE TYR TYR SEQRES 12 B 248 ASN ALA ASN SER ALA ALA SER ALA LEU MET VAL LEU ILE SEQRES 13 B 248 GLN SER THR SER GLU ALA ALA ARG TYR LYS PHE ILE GLU SEQRES 14 B 248 GLN GLN ILE GLY ALA ALA VAL ASP ALA THR PHE LEU PRO SEQRES 15 B 248 SER LEU ALA ILE ILE SER LEU GLU ASN SER TRP SER ALA SEQRES 16 B 248 LEU SER LYS GLN ILE GLN ILE ALA SER THR ASN ASN GLY SEQRES 17 B 248 GLN PHE GLU SER PRO VAL VAL LEU ILE ASN ALA GLN ASN SEQRES 18 B 248 GLN ARG VAL THR ILE THR ASN VAL ASP ALA GLY VAL VAL SEQRES 19 B 248 THR SER ASN ILE ALA LEU LEU LEU ASN ARG ASN ASN MET SEQRES 20 B 248 ALA FORMUL 3 HOH *381(H2 O) HELIX 1 1 THR A 10 ALA A 24 1 15 HELIX 2 2 PRO A 42 ARG A 46 1 5 HELIX 3 3 GLU A 85 ALA A 92 1 8 HELIX 4 4 ASN A 110 GLY A 119 1 10 HELIX 5 5 ILE A 121 ILE A 125 5 5 HELIX 6 6 GLY A 128 TYR A 141 1 14 HELIX 7 7 ASN A 143 THR A 158 1 16 HELIX 8 8 THR A 158 TYR A 164 1 7 HELIX 9 9 TYR A 164 ALA A 174 1 11 HELIX 10 10 SER A 182 SER A 191 1 10 HELIX 11 11 SER A 191 SER A 203 1 13 HELIX 12 12 ALA A 230 SER A 235 1 6 HELIX 13 13 ASN A 242 MET A 246 5 5 HELIX 14 14 THR B 10 ALA B 24 1 15 HELIX 15 15 PRO B 42 ARG B 46 1 5 HELIX 16 16 GLU B 85 ALA B 92 1 8 HELIX 17 17 ASN B 110 GLY B 119 1 10 HELIX 18 18 ILE B 121 ILE B 125 5 5 HELIX 19 19 GLY B 128 TYR B 141 1 14 HELIX 20 20 ASN B 143 THR B 158 1 16 HELIX 21 21 THR B 158 TYR B 164 1 7 HELIX 22 22 TYR B 164 ALA B 174 1 11 HELIX 23 23 SER B 182 SER B 191 1 10 HELIX 24 24 SER B 191 SER B 203 1 13 HELIX 25 25 ALA B 230 ASN B 236 1 7 SHEET 1 AA 6 VAL A 2 ARG A 5 0 SHEET 2 AA 6 TYR A 47 THR A 53 1 O LEU A 49 N VAL A 2 SHEET 3 AA 6 THR A 59 ASP A 65 -1 O ILE A 60 N LEU A 52 SHEET 4 AA 6 ILE A 71 ALA A 76 -1 N MET A 72 O ALA A 63 SHEET 5 AA 6 THR A 79 PHE A 82 -1 O THR A 79 N ALA A 76 SHEET 6 AA 6 ARG A 101 THR A 104 1 O ARG A 101 N SER A 80 SHEET 1 AB 2 ASN A 27 LEU A 31 0 SHEET 2 AB 2 ILE A 34 LEU A 37 -1 O ILE A 34 N LEU A 31 SHEET 1 AC 2 GLN A 208 ILE A 216 0 SHEET 2 AC 2 ARG A 222 ASN A 227 -1 O VAL A 223 N LEU A 215 SHEET 1 BA 6 VAL B 2 ARG B 5 0 SHEET 2 BA 6 TYR B 47 THR B 53 1 O LEU B 49 N VAL B 2 SHEET 3 BA 6 THR B 59 ASP B 65 -1 O ILE B 60 N LEU B 52 SHEET 4 BA 6 ILE B 71 ALA B 76 -1 N MET B 72 O ALA B 63 SHEET 5 BA 6 THR B 79 PHE B 82 -1 O THR B 79 N ALA B 76 SHEET 6 BA 6 ARG B 101 THR B 104 1 O ARG B 101 N SER B 80 SHEET 1 BB 2 ASN B 27 LEU B 31 0 SHEET 2 BB 2 ILE B 34 LEU B 37 -1 O ILE B 34 N LEU B 31 SHEET 1 BC 2 GLN B 208 ILE B 216 0 SHEET 2 BC 2 ARG B 222 ASN B 227 -1 O VAL B 223 N LEU B 215 CRYST1 70.025 95.840 101.832 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014281 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010434 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009820 0.00000