HEADER TRANSFERASE 23-APR-08 2VSH TITLE SYNTHESIS OF CDP-ACTIVATED RIBITOL FOR TEICHOIC ACID PRECURSORS IN TITLE 2 STREPTOCOCCUS PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TARI; COMPND 5 EC: 2.7.7.60 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 STRAIN: R36A; SOURCE 5 ATCC: 12214 KEYWDS TRANSFERASE, NUCLEOTIDYLTRANSFERASE, TARI SPR1149 CDP RIBITOL KEYWDS 2 STREPTOCOCCUS PNEUMONIAE TECHOIC TRANSFERASE, ISOPRENE BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR S.BAUR,J.MARLES-WRIGHT,S.BUCKENMAIER,R.J.LEWIS,W.VOLLMER REVDAT 3 13-DEC-23 2VSH 1 LINK REVDAT 2 10-FEB-09 2VSH 1 JRNL REMARK REVDAT 1 30-DEC-08 2VSH 0 JRNL AUTH S.BAUR,J.MARLES-WRIGHT,S.BUCKENMAIER,R.J.LEWIS,W.VOLLMER JRNL TITL SYNTHESIS OF CDP-ACTIVATED RIBITOL FOR TEICHOIC ACID JRNL TITL 2 PRECURSORS IN STREPTOCOCCUS PNEUMONIAE. JRNL REF J.BACTERIOL. V. 191 1200 2009 JRNL REFN ISSN 0021-9193 JRNL PMID 19074383 JRNL DOI 10.1128/JB.01120-08 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0040 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 35141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1805 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2442 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3515 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.29000 REMARK 3 B22 (A**2) : -0.76000 REMARK 3 B33 (A**2) : -1.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.044 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3678 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4964 ; 1.278 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 452 ; 5.599 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;35.127 ;25.127 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 667 ;16.058 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.692 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 587 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2640 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1751 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2521 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 268 ; 0.225 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.046 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.217 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.207 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2306 ; 0.540 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3659 ; 0.870 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1520 ; 1.397 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1299 ; 2.184 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 139 REMARK 3 ORIGIN FOR THE GROUP (A): -2.4488 -18.5217 -5.5312 REMARK 3 T TENSOR REMARK 3 T11: -0.1516 T22: -0.1737 REMARK 3 T33: -0.1592 T12: 0.0084 REMARK 3 T13: 0.0028 T23: -0.0586 REMARK 3 L TENSOR REMARK 3 L11: 0.9244 L22: 3.0900 REMARK 3 L33: 2.4082 L12: 0.5245 REMARK 3 L13: 0.1117 L23: 0.0912 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: 0.1335 S13: -0.0446 REMARK 3 S21: -0.1165 S22: -0.0247 S23: -0.0668 REMARK 3 S31: -0.1105 S32: 0.1558 S33: 0.0212 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 140 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): -21.6737 -22.2817 18.2248 REMARK 3 T TENSOR REMARK 3 T11: 0.0007 T22: 0.0661 REMARK 3 T33: -0.1032 T12: -0.0034 REMARK 3 T13: 0.0032 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 13.5685 L22: 2.7952 REMARK 3 L33: 2.2411 L12: -5.9834 REMARK 3 L13: -5.4271 L23: 2.4982 REMARK 3 S TENSOR REMARK 3 S11: -0.1527 S12: -1.1558 S13: -0.2302 REMARK 3 S21: 0.1359 S22: 0.1494 S23: 0.0987 REMARK 3 S31: 0.0365 S32: 0.2319 S33: 0.0033 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 233 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6455 -21.7108 2.1811 REMARK 3 T TENSOR REMARK 3 T11: -0.1084 T22: -0.1848 REMARK 3 T33: -0.1387 T12: 0.0153 REMARK 3 T13: 0.0188 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 1.1292 L22: 1.6300 REMARK 3 L33: 1.3711 L12: -0.2042 REMARK 3 L13: 0.0040 L23: -0.5810 REMARK 3 S TENSOR REMARK 3 S11: -0.0160 S12: -0.1480 S13: -0.1941 REMARK 3 S21: 0.1417 S22: 0.0484 S23: 0.0000 REMARK 3 S31: -0.0005 S32: -0.0964 S33: -0.0323 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 139 REMARK 3 ORIGIN FOR THE GROUP (A): -19.1737 -6.0295 38.0946 REMARK 3 T TENSOR REMARK 3 T11: -0.0352 T22: -0.0886 REMARK 3 T33: -0.1503 T12: 0.0132 REMARK 3 T13: 0.0153 T23: -0.0474 REMARK 3 L TENSOR REMARK 3 L11: 4.7527 L22: 0.6905 REMARK 3 L33: 2.4701 L12: 1.0532 REMARK 3 L13: -0.4666 L23: -0.7020 REMARK 3 S TENSOR REMARK 3 S11: 0.0388 S12: -0.2567 S13: 0.2111 REMARK 3 S21: 0.1407 S22: -0.0160 S23: 0.0873 REMARK 3 S31: -0.1405 S32: 0.0714 S33: -0.0228 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 140 B 167 REMARK 3 ORIGIN FOR THE GROUP (A): -19.4781 -23.7597 11.7618 REMARK 3 T TENSOR REMARK 3 T11: -0.0757 T22: -0.0683 REMARK 3 T33: -0.1685 T12: -0.0441 REMARK 3 T13: 0.0096 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 4.0238 L22: 7.3950 REMARK 3 L33: 4.8814 L12: -3.2998 REMARK 3 L13: -2.5484 L23: 4.5690 REMARK 3 S TENSOR REMARK 3 S11: 0.0155 S12: -0.1801 S13: -0.1641 REMARK 3 S21: -0.1426 S22: -0.0755 S23: 0.0911 REMARK 3 S31: -0.0625 S32: -0.0495 S33: 0.0600 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 168 B 232 REMARK 3 ORIGIN FOR THE GROUP (A): -21.1746 -16.0639 29.6684 REMARK 3 T TENSOR REMARK 3 T11: -0.0093 T22: -0.0717 REMARK 3 T33: -0.1038 T12: 0.0023 REMARK 3 T13: 0.0136 T23: -0.0804 REMARK 3 L TENSOR REMARK 3 L11: 5.3042 L22: 0.7755 REMARK 3 L33: 3.0345 L12: 1.4334 REMARK 3 L13: -1.5950 L23: -0.7066 REMARK 3 S TENSOR REMARK 3 S11: -0.1395 S12: 0.0044 S13: -0.4462 REMARK 3 S21: -0.0483 S22: -0.0044 S23: -0.1118 REMARK 3 S31: 0.3314 S32: -0.0658 S33: 0.1438 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2VSH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-APR-08. REMARK 100 THE DEPOSITION ID IS D_1290036018. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 140 REMARK 200 PH : 6.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36985 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 33.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1VPA REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 6.75 35 % V/W PEG 300 REMARK 280 200 MM CACL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.09500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.09500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.50000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.69000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.50000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.69000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.09500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.50000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.69000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.09500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.50000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.69000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2039 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 THR A 13 REMARK 465 ARG A 14 REMARK 465 MET A 15 REMARK 465 GLY A 16 REMARK 465 ILE A 17 REMARK 465 SER A 18 REMARK 465 ASN A 19 REMARK 465 LEU A 20 REMARK 465 LYS A 234 REMARK 465 ASP A 235 REMARK 465 GLY B 10 REMARK 465 THR B 11 REMARK 465 GLY B 12 REMARK 465 THR B 13 REMARK 465 ARG B 14 REMARK 465 MET B 15 REMARK 465 GLY B 16 REMARK 465 ILE B 17 REMARK 465 SER B 18 REMARK 465 ASN B 19 REMARK 465 LEU B 20 REMARK 465 GLU B 233 REMARK 465 LYS B 234 REMARK 465 ASP B 235 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 115 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 115 72.39 -113.41 REMARK 500 ASP A 157 173.83 179.09 REMARK 500 GLN A 168 -164.54 -123.79 REMARK 500 ASN A 216 52.19 -69.48 REMARK 500 ARG B 115 75.42 -113.53 REMARK 500 GLN B 168 -162.35 -122.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2019 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A2044 DISTANCE = 6.01 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1234 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 97 OD2 REMARK 620 2 ASP A 97 OD1 50.9 REMARK 620 3 HOH A2075 O 86.9 81.9 REMARK 620 4 HOH A2076 O 89.0 86.9 168.2 REMARK 620 5 HOH B2029 O 79.6 130.5 97.5 92.6 REMARK 620 6 HOH B2030 O 148.9 160.0 94.4 94.9 69.4 REMARK 620 7 HOH B2034 O 131.1 81.0 76.9 97.6 147.5 79.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1240 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2127 O REMARK 620 2 HOH A2132 O 66.9 REMARK 620 N 1 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A1235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A1236 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A1237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A1238 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A1239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1240 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G B1233 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VSI RELATED DB: PDB REMARK 900 SYNTHESIS OF CDP-ACTIVATED RIBITOL FOR TEICHOIC ACID PRECURSORS IN REMARK 900 STREPTOCOCCUS PNEUMONIAE DBREF 2VSH A 0 0 PDB 2VSH 2VSH 0 0 DBREF 2VSH A 1 235 UNP A5MSS9 A5MSS9_STRPN 1 235 DBREF 2VSH B 0 0 PDB 2VSH 2VSH 0 0 DBREF 2VSH B 1 235 UNP A5MSS9 A5MSS9_STRPN 1 235 SEQRES 1 A 236 HIS MET ILE TYR ALA GLY ILE LEU ALA GLY GLY THR GLY SEQRES 2 A 236 THR ARG MET GLY ILE SER ASN LEU PRO LYS GLN PHE LEU SEQRES 3 A 236 GLU LEU GLY ASP ARG PRO ILE LEU ILE HIS THR ILE GLU SEQRES 4 A 236 LYS PHE VAL LEU GLU PRO SER ILE GLU LYS ILE VAL VAL SEQRES 5 A 236 GLY VAL HIS GLY ASP TRP VAL SER HIS ALA GLU ASP LEU SEQRES 6 A 236 VAL ASP LYS TYR LEU PRO LEU TYR LYS GLU ARG ILE ILE SEQRES 7 A 236 ILE THR LYS GLY GLY ALA ASP ARG ASN THR SER ILE LYS SEQRES 8 A 236 ASN ILE ILE GLU ALA ILE ASP ALA TYR ARG PRO LEU THR SEQRES 9 A 236 PRO GLU ASP ILE VAL VAL THR HIS ASP SER VAL ARG PRO SEQRES 10 A 236 PHE ILE THR LEU ARG MET ILE GLN ASP ASN ILE GLN LEU SEQRES 11 A 236 ALA GLN ASN HIS ASP ALA VAL ASP THR VAL VAL GLU ALA SEQRES 12 A 236 VAL ASP THR ILE VAL GLU SER THR ASN GLY GLN PHE ILE SEQRES 13 A 236 THR ASP ILE PRO ASN ARG ALA HIS LEU TYR GLN GLY GLN SEQRES 14 A 236 THR PRO GLN THR PHE ARG CYS LYS ASP PHE MET ASP LEU SEQRES 15 A 236 TYR GLY SER LEU SER ASP GLU GLU LYS GLU ILE LEU THR SEQRES 16 A 236 ASP ALA CYS LYS ILE PHE VAL ILE LYS GLY LYS ASP VAL SEQRES 17 A 236 ALA LEU ALA LYS GLY GLU TYR SER ASN LEU LYS ILE THR SEQRES 18 A 236 THR VAL THR ASP LEU LYS ILE ALA LYS SER MET ILE GLU SEQRES 19 A 236 LYS ASP SEQRES 1 B 236 HIS MET ILE TYR ALA GLY ILE LEU ALA GLY GLY THR GLY SEQRES 2 B 236 THR ARG MET GLY ILE SER ASN LEU PRO LYS GLN PHE LEU SEQRES 3 B 236 GLU LEU GLY ASP ARG PRO ILE LEU ILE HIS THR ILE GLU SEQRES 4 B 236 LYS PHE VAL LEU GLU PRO SER ILE GLU LYS ILE VAL VAL SEQRES 5 B 236 GLY VAL HIS GLY ASP TRP VAL SER HIS ALA GLU ASP LEU SEQRES 6 B 236 VAL ASP LYS TYR LEU PRO LEU TYR LYS GLU ARG ILE ILE SEQRES 7 B 236 ILE THR LYS GLY GLY ALA ASP ARG ASN THR SER ILE LYS SEQRES 8 B 236 ASN ILE ILE GLU ALA ILE ASP ALA TYR ARG PRO LEU THR SEQRES 9 B 236 PRO GLU ASP ILE VAL VAL THR HIS ASP SER VAL ARG PRO SEQRES 10 B 236 PHE ILE THR LEU ARG MET ILE GLN ASP ASN ILE GLN LEU SEQRES 11 B 236 ALA GLN ASN HIS ASP ALA VAL ASP THR VAL VAL GLU ALA SEQRES 12 B 236 VAL ASP THR ILE VAL GLU SER THR ASN GLY GLN PHE ILE SEQRES 13 B 236 THR ASP ILE PRO ASN ARG ALA HIS LEU TYR GLN GLY GLN SEQRES 14 B 236 THR PRO GLN THR PHE ARG CYS LYS ASP PHE MET ASP LEU SEQRES 15 B 236 TYR GLY SER LEU SER ASP GLU GLU LYS GLU ILE LEU THR SEQRES 16 B 236 ASP ALA CYS LYS ILE PHE VAL ILE LYS GLY LYS ASP VAL SEQRES 17 B 236 ALA LEU ALA LYS GLY GLU TYR SER ASN LEU LYS ILE THR SEQRES 18 B 236 THR VAL THR ASP LEU LYS ILE ALA LYS SER MET ILE GLU SEQRES 19 B 236 LYS ASP HET CA A1234 1 HET PEG A1235 7 HET 1PE A1236 16 HET PG4 A1237 13 HET PEG A1238 7 HET PEG A1239 7 HET CA A1240 1 HET P6G B1233 19 HETNAM CA CALCIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM P6G HEXAETHYLENE GLYCOL HETSYN 1PE PEG400 HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 3 CA 2(CA 2+) FORMUL 4 PEG 3(C4 H10 O3) FORMUL 5 1PE C10 H22 O6 FORMUL 6 PG4 C8 H18 O5 FORMUL 10 P6G C12 H26 O7 FORMUL 11 HOH *240(H2 O) HELIX 1 1 PRO A 21 PHE A 24 5 4 HELIX 2 2 ILE A 32 LEU A 42 1 11 HELIX 3 3 TRP A 57 LEU A 69 1 13 HELIX 4 4 PRO A 70 GLU A 74 5 5 HELIX 5 5 ASP A 84 ARG A 100 1 17 HELIX 6 6 THR A 119 HIS A 133 1 15 HELIX 7 7 ASN A 160 ALA A 162 5 3 HELIX 8 8 CYS A 175 SER A 184 1 10 HELIX 9 9 SER A 186 LEU A 193 1 8 HELIX 10 10 ASP A 195 LYS A 203 1 9 HELIX 11 11 THR A 221 ILE A 232 1 12 HELIX 12 12 PRO B 21 PHE B 24 5 4 HELIX 13 13 ILE B 32 LEU B 42 1 11 HELIX 14 14 TRP B 57 LEU B 69 1 13 HELIX 15 15 PRO B 70 GLU B 74 5 5 HELIX 16 16 ASP B 84 ARG B 100 1 17 HELIX 17 17 THR B 119 ASN B 132 1 14 HELIX 18 18 ASN B 160 ALA B 162 5 3 HELIX 19 19 CYS B 175 SER B 184 1 10 HELIX 20 20 SER B 186 LEU B 193 1 8 HELIX 21 21 ASP B 195 LYS B 203 1 9 HELIX 22 22 THR B 221 ILE B 232 1 12 SHEET 1 AA 7 ILE A 76 LYS A 80 0 SHEET 2 AA 7 ILE A 49 VAL A 53 1 O ILE A 49 N ILE A 77 SHEET 3 AA 7 ILE A 2 ALA A 8 1 O ALA A 4 N VAL A 50 SHEET 4 AA 7 ILE A 107 ASP A 112 1 O ILE A 107 N TYR A 3 SHEET 5 AA 7 LEU A 164 ARG A 174 -1 O GLN A 171 N THR A 110 SHEET 6 AA 7 ALA A 135 GLU A 141 -1 O VAL A 136 N THR A 172 SHEET 7 AA 7 VAL A 207 LYS A 211 1 O ALA A 208 N ASP A 137 SHEET 1 AB 6 ILE A 76 LYS A 80 0 SHEET 2 AB 6 ILE A 49 VAL A 53 1 O ILE A 49 N ILE A 77 SHEET 3 AB 6 ILE A 2 ALA A 8 1 O ALA A 4 N VAL A 50 SHEET 4 AB 6 ILE A 107 ASP A 112 1 O ILE A 107 N TYR A 3 SHEET 5 AB 6 LEU A 164 ARG A 174 -1 O GLN A 171 N THR A 110 SHEET 6 AB 6 ILE B 146 GLU B 148 -1 O VAL B 147 N TYR A 165 SHEET 1 AC 2 GLU A 26 LEU A 27 0 SHEET 2 AC 2 ARG A 30 PRO A 31 -1 O ARG A 30 N LEU A 27 SHEET 1 AD 6 ILE A 146 GLU A 148 0 SHEET 2 AD 6 LEU B 164 ARG B 174 -1 O TYR B 165 N VAL A 147 SHEET 3 AD 6 ILE B 107 ASP B 112 -1 O VAL B 108 N PHE B 173 SHEET 4 AD 6 ILE B 2 ALA B 8 1 O TYR B 3 N VAL B 109 SHEET 5 AD 6 ILE B 46 VAL B 53 1 N GLU B 47 O ILE B 2 SHEET 6 AD 6 ILE B 76 LYS B 80 1 O ILE B 77 N VAL B 51 SHEET 1 AE 4 ILE A 146 GLU A 148 0 SHEET 2 AE 4 LEU B 164 ARG B 174 -1 O TYR B 165 N VAL A 147 SHEET 3 AE 4 ALA B 135 GLU B 141 -1 O VAL B 136 N THR B 172 SHEET 4 AE 4 VAL B 207 LYS B 211 1 O ALA B 208 N ASP B 137 SHEET 1 BA 2 GLU B 26 LEU B 27 0 SHEET 2 BA 2 ARG B 30 PRO B 31 -1 O ARG B 30 N LEU B 27 LINK OD2 ASP A 97 CA CA A1234 1555 1555 2.48 LINK OD1 ASP A 97 CA CA A1234 1555 1555 2.61 LINK CA CA A1234 O HOH A2075 1555 1555 2.45 LINK CA CA A1234 O HOH A2076 1555 1555 2.46 LINK CA CA A1234 O HOH B2029 1555 6444 2.28 LINK CA CA A1234 O HOH B2030 1555 6444 2.37 LINK CA CA A1234 O HOH B2034 1555 6444 2.34 LINK CA CA A1240 O HOH A2127 1555 1555 3.06 LINK CA CA A1240 O HOH A2132 1555 1555 2.47 CISPEP 1 THR A 169 PRO A 170 0 5.03 CISPEP 2 THR B 169 PRO B 170 0 10.59 SITE 1 AC1 6 ASP A 97 HOH A2075 HOH A2076 HOH B2029 SITE 2 AC1 6 HOH B2030 HOH B2034 SITE 1 AC2 4 HIS A 54 GLY A 55 LYS A 80 HOH A2161 SITE 1 AC3 5 ASP A 134 LEU A 181 LYS A 203 GLY A 204 SITE 2 AC3 5 LYS A 205 SITE 1 AC4 4 ARG A 100 PRO A 101 LEU B 102 LYS B 176 SITE 1 AC5 3 GLY A 204 ASP A 206 PHE B 154 SITE 1 AC6 6 THR A 119 LEU A 120 ARG A 121 SER A 186 SITE 2 AC6 6 GLU A 188 HOH A2088 SITE 1 AC7 2 HOH A2127 HOH A2132 SITE 1 AC8 7 ASP B 134 ASP B 177 LEU B 181 LYS B 203 SITE 2 AC8 7 GLY B 204 LYS B 205 HOH B2078 CRYST1 81.000 93.380 144.190 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012346 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010709 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006935 0.00000