HEADER PHOTOSYNTHESIS 21-MAY-08 2VU4 TITLE STRUCTURE OF PSBP PROTEIN FROM SPINACIA OLERACEA AT 1.98 A RESOLUTION CAVEAT 2VU4 ILE A 129 CBETA WRONG HAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXYGEN-EVOLVING ENHANCER PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OEE2,23 KDA SUBUNIT OF OXYGEN EVOLVING SYSTEM OF PHOTOSYSTEM COMPND 5 II, 23 KDA THYLAKOID MEMBRANE PROTEIN, PSBP; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPINACIA OLERACEA; SOURCE 3 ORGANISM_COMMON: SPINACH; SOURCE 4 ORGANISM_TAXID: 3562; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET12A; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: JR2592 KEYWDS 23 KDA PROTEIN, TRANSIT PEPTIDE, HIGHER PLANTS, PHOTOSYNTHESIS, KEYWDS 2 PHOTOSYSTEM II, MEMBRANE, THYLAKOID, CHLOROPLAST, OXYGEN-EVOLVING KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.LAPKOUSKI,R.RISTVEJOVA,J.B.ARELLANO,J.L.REVUELTA,I.KUTA SMATANOVA, AUTHOR 2 R.ETTRICH REVDAT 5 13-DEC-23 2VU4 1 REMARK LINK REVDAT 4 07-NOV-12 2VU4 1 JRNL REVDAT 3 24-OCT-12 2VU4 1 JRNL REMARK DBREF SEQADV REVDAT 3 2 1 SEQRES MASTER REVDAT 2 13-JUL-11 2VU4 1 VERSN REVDAT 1 21-JUL-09 2VU4 0 JRNL AUTH V.J.KOPECKY,J.KOHOUTOVA,M.LAPKOUSKI,K.HOFBAUEROVA,Z.SOVOVA, JRNL AUTH 2 O.ETTRICHOVA,S.GONZALEZ-PEREZ,A.DULEBO,D.KAFTAN, JRNL AUTH 3 I.KUTA SMATANOVA,J.L.REVUELTA,J.B.ARELLANO,J.CAREY,R.ETTRICH JRNL TITL RAMAN SPECTROSCOPY ADDS COMPLEMENTARY DETAIL TO THE JRNL TITL 2 HIGH-RESOLUTION X-RAY CRYSTAL STRUCTURE OF PHOTOSYNTHETIC JRNL TITL 3 PSBP FROM SPINACIA OLERACEA. JRNL REF PLOS ONE V. 7 46694 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 23071614 JRNL DOI 10.1371/JOURNAL.PONE.0046694 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.6 REMARK 3 NUMBER OF REFLECTIONS : 8009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 884 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 525 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1138 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.38000 REMARK 3 B22 (A**2) : 1.04000 REMARK 3 B33 (A**2) : 0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.231 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.150 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.980 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1162 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 783 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1571 ; 2.070 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1921 ; 1.263 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 145 ; 7.136 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 48 ;40.986 ;25.417 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 194 ;20.187 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;11.023 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 175 ; 0.284 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1281 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 227 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 150 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 714 ; 0.200 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 535 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 594 ; 0.096 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 24 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.239 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 19 ; 0.244 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 811 ; 1.318 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1179 ; 1.789 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 483 ; 2.894 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 392 ; 4.019 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4250 4.5730 0.3010 REMARK 3 T TENSOR REMARK 3 T11: 0.1756 T22: -0.0757 REMARK 3 T33: -0.0125 T12: 0.0384 REMARK 3 T13: 0.1238 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 6.6850 L22: 6.8303 REMARK 3 L33: 4.9208 L12: 2.3531 REMARK 3 L13: 0.8237 L23: 0.6634 REMARK 3 S TENSOR REMARK 3 S11: -0.2647 S12: 0.3267 S13: -0.0089 REMARK 3 S21: -0.5327 S22: 0.1579 S23: -0.3965 REMARK 3 S31: -0.3218 S32: 0.1024 S33: 0.1068 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 165 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8590 -1.3910 11.5590 REMARK 3 T TENSOR REMARK 3 T11: 0.2079 T22: -0.0461 REMARK 3 T33: 0.0099 T12: 0.0430 REMARK 3 T13: 0.0376 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 2.5739 L22: 3.8361 REMARK 3 L33: 1.8672 L12: 1.4608 REMARK 3 L13: -0.8105 L23: -0.9281 REMARK 3 S TENSOR REMARK 3 S11: 0.1615 S12: -0.1365 S13: -0.0718 REMARK 3 S21: 0.1602 S22: -0.1094 S23: -0.0938 REMARK 3 S31: -0.0493 S32: 0.0271 S33: -0.0521 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 166 A 186 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8580 10.2280 7.4840 REMARK 3 T TENSOR REMARK 3 T11: 0.2425 T22: -0.0213 REMARK 3 T33: 0.0090 T12: 0.0527 REMARK 3 T13: 0.0424 T23: 0.0285 REMARK 3 L TENSOR REMARK 3 L11: 2.3400 L22: 16.9821 REMARK 3 L33: 11.0560 L12: 3.4622 REMARK 3 L13: 2.3082 L23: 9.2192 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: 0.1820 S13: 0.2518 REMARK 3 S21: -0.0636 S22: -0.0398 S23: 0.0379 REMARK 3 S31: -0.4888 S32: 0.0376 S33: 0.0339 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 1-15,90-107,135-139 ARE DISORDERED. REMARK 4 REMARK 4 2VU4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1290036277. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9051 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 45.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1V2B REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 25.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.38500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.24750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.78400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.24750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.38500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.78400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 TYR A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 ASN A 7 REMARK 465 VAL A 8 REMARK 465 PHE A 9 REMARK 465 GLY A 10 REMARK 465 LYS A 11 REMARK 465 PRO A 12 REMARK 465 LYS A 13 REMARK 465 LYS A 14 REMARK 465 ASN A 15 REMARK 465 LYS A 90 REMARK 465 GLN A 91 REMARK 465 ALA A 92 REMARK 465 TYR A 93 REMARK 465 PHE A 94 REMARK 465 GLY A 95 REMARK 465 LYS A 96 REMARK 465 THR A 97 REMARK 465 ASP A 98 REMARK 465 SER A 99 REMARK 465 GLU A 100 REMARK 465 GLY A 101 REMARK 465 GLY A 102 REMARK 465 PHE A 103 REMARK 465 ASP A 104 REMARK 465 SER A 105 REMARK 465 GLY A 106 REMARK 465 VAL A 107 REMARK 465 THR A 135 REMARK 465 ALA A 136 REMARK 465 ASP A 137 REMARK 465 GLY A 138 REMARK 465 ASP A 139 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 GLU A 115 OE1 OE2 REMARK 470 LYS A 152 CE NZ REMARK 470 ARG A 167 CZ NH1 NH2 REMARK 470 LYS A 170 CE NZ REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1187 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 79 OD2 REMARK 620 2 HIS A 144 NE2 110.3 REMARK 620 3 ASP A 165 OD1 111.4 98.5 REMARK 620 4 HOH A2034 O 106.1 113.5 117.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1187 DBREF 2VU4 A 1 186 UNP P12302 PSBP_SPIOL 82 267 SEQADV 2VU4 GLY A -3 UNP P12302 EXPRESSION TAG SEQADV 2VU4 SER A -2 UNP P12302 EXPRESSION TAG SEQADV 2VU4 HIS A -1 UNP P12302 EXPRESSION TAG SEQADV 2VU4 MET A 0 UNP P12302 EXPRESSION TAG SEQRES 1 A 190 GLY SER HIS MET ALA TYR GLY GLU ALA ALA ASN VAL PHE SEQRES 2 A 190 GLY LYS PRO LYS LYS ASN THR GLU PHE MET PRO TYR ASN SEQRES 3 A 190 GLY ASP GLY PHE LYS LEU LEU VAL PRO SER LYS TRP ASN SEQRES 4 A 190 PRO SER LYS GLU LYS GLU PHE PRO GLY GLN VAL LEU ARG SEQRES 5 A 190 TYR GLU ASP ASN PHE ASP ALA THR SER ASN LEU SER VAL SEQRES 6 A 190 LEU VAL GLN PRO THR ASP LYS LYS SER ILE THR ASP PHE SEQRES 7 A 190 GLY SER PRO GLU ASP PHE LEU SER GLN VAL ASP TYR LEU SEQRES 8 A 190 LEU GLY LYS GLN ALA TYR PHE GLY LYS THR ASP SER GLU SEQRES 9 A 190 GLY GLY PHE ASP SER GLY VAL VAL ALA SER ALA ASN VAL SEQRES 10 A 190 LEU GLU SER SER THR PRO VAL VAL ASP GLY LYS GLN TYR SEQRES 11 A 190 TYR SER ILE THR VAL LEU THR ARG THR ALA ASP GLY ASP SEQRES 12 A 190 GLU GLY GLY LYS HIS GLN VAL ILE ALA ALA THR VAL LYS SEQRES 13 A 190 ASP GLY LYS LEU TYR ILE CYS LYS ALA GLN ALA GLY ASP SEQRES 14 A 190 LYS ARG TRP PHE LYS GLY ALA LYS LYS PHE VAL GLU SER SEQRES 15 A 190 ALA THR SER SER PHE SER VAL ALA HET ZN A1187 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ FORMUL 3 HOH *34(H2 O) HELIX 1 1 SER A 70 GLY A 75 5 6 HELIX 2 2 SER A 76 VAL A 84 1 9 HELIX 3 3 ASP A 85 GLY A 89 5 5 HELIX 4 4 ASP A 165 LYS A 170 1 6 HELIX 5 5 GLY A 171 PHE A 183 1 13 SHEET 1 AA 3 PHE A 18 ASN A 22 0 SHEET 2 AA 3 PHE A 26 PRO A 31 -1 O LEU A 28 N TYR A 21 SHEET 3 AA 3 SER A 184 VAL A 185 -1 O SER A 184 N LYS A 27 SHEET 1 AB 7 ASN A 35 PRO A 36 0 SHEET 2 AB 7 GLN A 45 GLU A 50 -1 O GLU A 50 N ASN A 35 SHEET 3 AB 7 ASN A 58 PRO A 65 -1 O LEU A 59 N TYR A 49 SHEET 4 AB 7 LYS A 155 GLY A 164 -1 O LEU A 156 N GLN A 64 SHEET 5 AB 7 LYS A 143 LYS A 152 -1 O HIS A 144 N ALA A 163 SHEET 6 AB 7 TYR A 127 THR A 133 -1 O TYR A 127 N ALA A 149 SHEET 7 AB 7 ALA A 111 SER A 117 -1 O ASN A 112 N LEU A 132 SHEET 1 AC 2 VAL A 120 VAL A 121 0 SHEET 2 AC 2 LYS A 124 GLN A 125 -1 O LYS A 124 N VAL A 121 LINK OD2 ASP A 79 ZN ZN A1187 3555 1555 1.94 LINK NE2 HIS A 144 ZN ZN A1187 1555 1555 2.17 LINK OD1 ASP A 165 ZN ZN A1187 1555 1555 2.06 LINK ZN ZN A1187 O HOH A2034 1555 1555 2.18 CISPEP 1 GLU A 140 GLY A 141 0 -19.53 SITE 1 AC1 4 ASP A 79 HIS A 144 ASP A 165 HOH A2034 CRYST1 36.770 45.568 82.495 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027196 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021945 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012122 0.00000