HEADER HYDROLASE 22-MAY-08 2VUA TITLE CRYSTAL STRUCTURE OF THE BOTULINUM NEUROTOXIN SEROTYPE A BINDING TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BOTULINUM NEUROTOXIN A HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BINDING DOMAIN, RESIDUES 876-1296; COMPND 5 SYNONYM: BOTULINUM NEUROTOXIN SEROTYPE A BINDING DOMAIN, BONT/A, COMPND 6 BONTOXILYSIN-A, BOTOX, BOTULINUM NEUROTOXIN TYPE A; COMPND 7 EC: 3.4.24.69; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 3 ORGANISM_TAXID: 1491; SOURCE 4 STRAIN: A1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GANGLIOSIDE, RECEPTOR, TOXIN, MEMBRANE, SECRETED, METAL-BINDING, KEYWDS 2 HYDROLASE, METALLOPROTEASE, NEUROTOXIN, PROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR P.STENMARK,J.DUPUY,R.C.STEVENS REVDAT 4 13-DEC-23 2VUA 1 REMARK REVDAT 3 13-JUL-11 2VUA 1 VERSN REVDAT 2 24-FEB-09 2VUA 1 VERSN REVDAT 1 26-AUG-08 2VUA 0 JRNL AUTH P.STENMARK,J.DUPUY,A.IMAMURA,M.KISO,R.C.STEVENS JRNL TITL CRYSTAL STRUCTURE OF BOTULINUM NEUROTOXIN TYPE A IN COMPLEX JRNL TITL 2 WITH THE CELL SURFACE CO-RECEPTOR GT1B- INSIGHT INTO THE JRNL TITL 3 TOXIN-NEURON INTERACTION. JRNL REF PLOS PATHOG. V. 4 E129 2008 JRNL REFN ISSN 1553-7366 JRNL PMID 18704164 JRNL DOI 10.1371/JOURNAL.PPAT.1000129 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 46044 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2469 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3300 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 196 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3487 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 311 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.95000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : -1.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.189 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3591 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2448 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4859 ; 1.478 ; 1.934 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5955 ; 0.880 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 429 ; 7.281 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;34.931 ;24.844 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 654 ;13.638 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;16.080 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 519 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3997 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 743 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 617 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2644 ; 0.198 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1731 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1980 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 236 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.225 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 59 ; 0.283 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.234 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2748 ; 1.110 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3436 ; 1.374 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1777 ; 2.283 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1419 ; 3.185 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 873 A 910 REMARK 3 ORIGIN FOR THE GROUP (A): 32.7790 32.0750 -8.4060 REMARK 3 T TENSOR REMARK 3 T11: -0.1548 T22: 0.0774 REMARK 3 T33: 0.2149 T12: -0.0374 REMARK 3 T13: 0.0733 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.8523 L22: 2.6825 REMARK 3 L33: 2.2674 L12: -0.7874 REMARK 3 L13: 0.6514 L23: 0.5927 REMARK 3 S TENSOR REMARK 3 S11: 0.1473 S12: 0.2303 S13: -0.1292 REMARK 3 S21: -0.3575 S22: -0.0308 S23: -0.6147 REMARK 3 S31: -0.0764 S32: 0.4797 S33: -0.1165 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 911 A 954 REMARK 3 ORIGIN FOR THE GROUP (A): 25.4100 39.0610 -2.7650 REMARK 3 T TENSOR REMARK 3 T11: 0.0307 T22: 0.0198 REMARK 3 T33: 0.0845 T12: -0.0379 REMARK 3 T13: 0.0146 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.3896 L22: 1.8938 REMARK 3 L33: 3.4385 L12: 0.2166 REMARK 3 L13: 0.0836 L23: -1.0854 REMARK 3 S TENSOR REMARK 3 S11: 0.0363 S12: 0.0677 S13: 0.0148 REMARK 3 S21: 0.1197 S22: -0.0883 S23: -0.3649 REMARK 3 S31: -0.4986 S32: 0.2788 S33: 0.0519 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 955 A 1033 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8510 40.5770 0.9210 REMARK 3 T TENSOR REMARK 3 T11: 0.1359 T22: 0.0196 REMARK 3 T33: 0.0222 T12: 0.0767 REMARK 3 T13: 0.0331 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 0.5401 L22: 1.3283 REMARK 3 L33: 4.1838 L12: 0.1712 REMARK 3 L13: -0.7254 L23: -1.0913 REMARK 3 S TENSOR REMARK 3 S11: 0.1115 S12: 0.0738 S13: 0.1022 REMARK 3 S21: 0.2626 S22: 0.1178 S23: 0.0433 REMARK 3 S31: -0.8309 S32: -0.3595 S33: -0.2293 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1034 A 1093 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7890 36.6080 -4.5260 REMARK 3 T TENSOR REMARK 3 T11: -0.0193 T22: -0.0226 REMARK 3 T33: 0.0194 T12: 0.0100 REMARK 3 T13: 0.0328 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.0820 L22: 2.5007 REMARK 3 L33: 5.0059 L12: 0.1873 REMARK 3 L13: -0.2648 L23: -1.5557 REMARK 3 S TENSOR REMARK 3 S11: 0.0686 S12: 0.1398 S13: -0.0286 REMARK 3 S21: -0.0258 S22: 0.0557 S23: -0.1444 REMARK 3 S31: -0.3087 S32: -0.1522 S33: -0.1243 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1094 A 1131 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8580 12.7580 15.6080 REMARK 3 T TENSOR REMARK 3 T11: 0.0154 T22: 0.0415 REMARK 3 T33: 0.0806 T12: 0.0095 REMARK 3 T13: -0.0362 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.5958 L22: 2.4113 REMARK 3 L33: 1.8024 L12: -0.0382 REMARK 3 L13: -0.3145 L23: -0.1161 REMARK 3 S TENSOR REMARK 3 S11: -0.0412 S12: 0.0109 S13: 0.0331 REMARK 3 S21: 0.0266 S22: 0.0820 S23: 0.1650 REMARK 3 S31: -0.0236 S32: -0.0646 S33: -0.0408 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1132 A 1171 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6660 16.4150 19.2150 REMARK 3 T TENSOR REMARK 3 T11: 0.0666 T22: 0.0572 REMARK 3 T33: 0.0588 T12: -0.0022 REMARK 3 T13: -0.0227 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.2450 L22: 1.2091 REMARK 3 L33: 1.8604 L12: 0.4855 REMARK 3 L13: -0.1759 L23: -0.4264 REMARK 3 S TENSOR REMARK 3 S11: -0.0334 S12: -0.0367 S13: -0.0914 REMARK 3 S21: 0.1813 S22: 0.0228 S23: 0.0519 REMARK 3 S31: -0.1599 S32: 0.0940 S33: 0.0106 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1172 A 1222 REMARK 3 ORIGIN FOR THE GROUP (A): 23.3000 0.1100 16.4300 REMARK 3 T TENSOR REMARK 3 T11: 0.0779 T22: 0.0085 REMARK 3 T33: 0.0498 T12: 0.0277 REMARK 3 T13: 0.0152 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.6194 L22: 1.4182 REMARK 3 L33: 2.9412 L12: 0.0749 REMARK 3 L13: -0.3050 L23: -0.0629 REMARK 3 S TENSOR REMARK 3 S11: -0.1658 S12: -0.0323 S13: -0.1286 REMARK 3 S21: 0.1101 S22: 0.0745 S23: -0.0060 REMARK 3 S31: 0.4231 S32: 0.0463 S33: 0.0913 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1223 A 1264 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4380 3.7090 11.2220 REMARK 3 T TENSOR REMARK 3 T11: 0.0192 T22: 0.1110 REMARK 3 T33: 0.0799 T12: -0.0154 REMARK 3 T13: -0.0162 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.2035 L22: 2.1105 REMARK 3 L33: 1.7596 L12: -0.6576 REMARK 3 L13: 0.0477 L23: 0.4510 REMARK 3 S TENSOR REMARK 3 S11: -0.0562 S12: 0.1730 S13: 0.0693 REMARK 3 S21: -0.1173 S22: -0.0366 S23: 0.2449 REMARK 3 S31: 0.1454 S32: -0.2432 S33: 0.0927 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1265 A 1277 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9890 4.7340 4.5710 REMARK 3 T TENSOR REMARK 3 T11: 0.0365 T22: 0.1805 REMARK 3 T33: 0.2056 T12: -0.0103 REMARK 3 T13: -0.1832 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 8.5966 L22: 14.5540 REMARK 3 L33: 11.7538 L12: -6.0070 REMARK 3 L13: 0.1526 L23: 1.5323 REMARK 3 S TENSOR REMARK 3 S11: 0.2655 S12: 0.3649 S13: -0.1126 REMARK 3 S21: -1.8630 S22: 0.0375 S23: 1.6204 REMARK 3 S31: -0.3940 S32: -1.2343 S33: -0.3030 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1278 A 1297 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1090 20.0970 17.8140 REMARK 3 T TENSOR REMARK 3 T11: 0.0990 T22: 0.0896 REMARK 3 T33: 0.0814 T12: 0.0091 REMARK 3 T13: -0.0368 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.9487 L22: 2.4763 REMARK 3 L33: 1.8328 L12: -0.2827 REMARK 3 L13: -1.0346 L23: -0.9899 REMARK 3 S TENSOR REMARK 3 S11: -0.0302 S12: -0.1278 S13: 0.0700 REMARK 3 S21: 0.1784 S22: -0.0282 S23: 0.0582 REMARK 3 S31: -0.2248 S32: 0.1238 S33: 0.0584 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VUA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1290036345. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48513 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2NYY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG3350, 0.2 M MGCL2, 0.1 M REMARK 280 BISTRIS PH 5.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.90000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.90000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.50000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.25000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.50000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.25000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.90000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.50000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.25000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.90000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.50000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.25000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 854 REMARK 465 GLY A 855 REMARK 465 SER A 856 REMARK 465 SER A 857 REMARK 465 HIS A 858 REMARK 465 HIS A 859 REMARK 465 HIS A 860 REMARK 465 HIS A 861 REMARK 465 HIS A 862 REMARK 465 HIS A 863 REMARK 465 SER A 864 REMARK 465 SER A 865 REMARK 465 GLY A 866 REMARK 465 LEU A 867 REMARK 465 VAL A 868 REMARK 465 PRO A 869 REMARK 465 ARG A 870 REMARK 465 GLY A 871 REMARK 465 SER A 872 REMARK 465 GLN A 1229 REMARK 465 GLY A 1230 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 873 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 875 O HOH A 2003 1.91 REMARK 500 O TYR A 1088 OG SER A 1092 2.15 REMARK 500 O SER A 1092 O HOH A 2143 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1025 -94.52 -141.21 REMARK 500 LYS A1056 141.77 -172.14 REMARK 500 ASP A1076 33.97 -92.57 REMARK 500 ASN A1127 139.85 68.08 REMARK 500 ASN A1147 -1.21 70.64 REMARK 500 ILE A1148 -50.87 -121.21 REMARK 500 TYR A1165 -72.81 -132.48 REMARK 500 GLN A1219 -11.57 -144.34 REMARK 500 ASN A1233 23.50 85.39 REMARK 500 ARG A1273 16.30 54.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 1255 ASN A 1256 -51.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BTA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOTULINUM NEUROTOXIN SEROTYPE A REMARK 900 RELATED ID: 1UEE RELATED DB: PDB REMARK 900 THE STRUCTURE OF SUBSTRATE-BOUND BOTOX LIGHT CHAIN REMARK 900 RELATED ID: 2VU9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A TOXIN-SUGAR COMPLEX DBREF 2VUA A 854 875 PDB 2VUA 2VUA 854 875 DBREF 2VUA A 876 1296 UNP P10845 BXA1_CLOBO 876 1296 DBREF 2VUA A 1297 1297 PDB 2VUA 2VUA 1297 1297 SEQRES 1 A 444 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 444 LEU VAL PRO ARG GLY SER HIS MET ASP THR SER ILE LEU SEQRES 3 A 444 ASN LEU ARG TYR GLU SER ASN HIS LEU ILE ASP LEU SER SEQRES 4 A 444 ARG TYR ALA SER LYS ILE ASN ILE GLY SER LYS VAL ASN SEQRES 5 A 444 PHE ASP PRO ILE ASP LYS ASN GLN ILE GLN LEU PHE ASN SEQRES 6 A 444 LEU GLU SER SER LYS ILE GLU VAL ILE LEU LYS ASN ALA SEQRES 7 A 444 ILE VAL TYR ASN SER MET TYR GLU ASN PHE SER THR SER SEQRES 8 A 444 PHE TRP ILE ARG ILE PRO LYS TYR PHE ASN SER ILE SER SEQRES 9 A 444 LEU ASN ASN GLU TYR THR ILE ILE ASN CYS MET GLU ASN SEQRES 10 A 444 ASN SER GLY TRP LYS VAL SER LEU ASN TYR GLY GLU ILE SEQRES 11 A 444 ILE TRP THR LEU GLN ASP THR GLN GLU ILE LYS GLN ARG SEQRES 12 A 444 VAL VAL PHE LYS TYR SER GLN MET ILE ASN ILE SER ASP SEQRES 13 A 444 TYR ILE ASN ARG TRP ILE PHE VAL THR ILE THR ASN ASN SEQRES 14 A 444 ARG LEU ASN ASN SER LYS ILE TYR ILE ASN GLY ARG LEU SEQRES 15 A 444 ILE ASP GLN LYS PRO ILE SER ASN LEU GLY ASN ILE HIS SEQRES 16 A 444 ALA SER ASN ASN ILE MET PHE LYS LEU ASP GLY CYS ARG SEQRES 17 A 444 ASP THR HIS ARG TYR ILE TRP ILE LYS TYR PHE ASN LEU SEQRES 18 A 444 PHE ASP LYS GLU LEU ASN GLU LYS GLU ILE LYS ASP LEU SEQRES 19 A 444 TYR ASP ASN GLN SER ASN SER GLY ILE LEU LYS ASP PHE SEQRES 20 A 444 TRP GLY ASP TYR LEU GLN TYR ASP LYS PRO TYR TYR MET SEQRES 21 A 444 LEU ASN LEU TYR ASP PRO ASN LYS TYR VAL ASP VAL ASN SEQRES 22 A 444 ASN VAL GLY ILE ARG GLY TYR MET TYR LEU LYS GLY PRO SEQRES 23 A 444 ARG GLY SER VAL MET THR THR ASN ILE TYR LEU ASN SER SEQRES 24 A 444 SER LEU TYR ARG GLY THR LYS PHE ILE ILE LYS LYS TYR SEQRES 25 A 444 ALA SER GLY ASN LYS ASP ASN ILE VAL ARG ASN ASN ASP SEQRES 26 A 444 ARG VAL TYR ILE ASN VAL VAL VAL LYS ASN LYS GLU TYR SEQRES 27 A 444 ARG LEU ALA THR ASN ALA SER GLN ALA GLY VAL GLU LYS SEQRES 28 A 444 ILE LEU SER ALA LEU GLU ILE PRO ASP VAL GLY ASN LEU SEQRES 29 A 444 SER GLN VAL VAL VAL MET LYS SER LYS ASN ASP GLN GLY SEQRES 30 A 444 ILE THR ASN LYS CYS LYS MET ASN LEU GLN ASP ASN ASN SEQRES 31 A 444 GLY ASN ASP ILE GLY PHE ILE GLY PHE HIS GLN PHE ASN SEQRES 32 A 444 ASN ILE ALA LYS LEU VAL ALA SER ASN TRP TYR ASN ARG SEQRES 33 A 444 GLN ILE GLU ARG SER SER ARG THR LEU GLY CYS SER TRP SEQRES 34 A 444 GLU PHE ILE PRO VAL ASP ASP GLY TRP GLY GLU ARG PRO SEQRES 35 A 444 LEU GLN FORMUL 2 HOH *311(H2 O) HELIX 1 1 LYS A 929 VAL A 933 5 5 HELIX 2 2 ASN A 954 LEU A 958 5 5 HELIX 3 3 ASN A 1080 ASN A 1093 1 14 HELIX 4 4 GLU A 1210 VAL A 1214 5 5 HELIX 5 5 TRP A 1266 GLN A 1270 5 5 HELIX 6 6 SER A 1274 LEU A 1278 5 5 SHEET 1 AA 5 HIS A 887 ASP A 890 0 SHEET 2 AA 5 SER A 877 GLU A 884 -1 O ARG A 882 N ILE A 889 SHEET 3 AA 5 TYR A1066 PHE A1075 -1 O PHE A1072 N LEU A 881 SHEET 4 AA 5 ILE A 914 PHE A 917 -1 O ILE A 914 N ILE A1069 SHEET 5 AA 5 VAL A 904 PHE A 906 -1 O ASN A 905 N GLN A 915 SHEET 1 AB 7 HIS A 887 ASP A 890 0 SHEET 2 AB 7 SER A 877 GLU A 884 -1 O ARG A 882 N ILE A 889 SHEET 3 AB 7 TYR A1066 PHE A1075 -1 O PHE A1072 N LEU A 881 SHEET 4 AB 7 PHE A 941 ARG A 948 -1 O SER A 942 N PHE A1075 SHEET 5 AB 7 ILE A1015 ASN A1021 -1 O ILE A1015 N ILE A 947 SHEET 6 AB 7 ASN A1026 ILE A1031 -1 O LYS A1028 N THR A1020 SHEET 7 AB 7 ARG A1034 PRO A1040 -1 O ARG A1034 N ILE A1031 SHEET 1 AC 7 LYS A 897 ILE A 900 0 SHEET 2 AC 7 ILE A 924 ILE A 927 -1 O GLU A 925 N ASN A 899 SHEET 3 AC 7 ASN A1052 ASP A1058 -1 O ILE A1053 N VAL A 926 SHEET 4 AC 7 TYR A 962 GLU A 969 -1 O THR A 963 N ASP A1058 SHEET 5 AC 7 SER A 972 ASN A 979 -1 O SER A 972 N GLU A 969 SHEET 6 AC 7 GLU A 982 GLN A 988 -1 O GLU A 982 N ASN A 979 SHEET 7 AC 7 LYS A 994 LYS A1000 -1 O GLN A 995 N LEU A 987 SHEET 1 AD 2 ASN A 935 SER A 936 0 SHEET 2 AD 2 ILE A1047 HIS A1048 -1 O ILE A1047 N SER A 936 SHEET 1 AE 2 TYR A1112 ASN A1115 0 SHEET 2 AE 2 TRP A1282 ILE A1285 -1 O GLU A1283 N LEU A1114 SHEET 1 AF 4 TYR A1122 ASN A1126 0 SHEET 2 AF 4 TYR A1133 LYS A1137 -1 O TYR A1133 N ASN A1126 SHEET 3 AF 4 ILE A1258 SER A1264 -1 O ALA A1259 N LEU A1136 SHEET 4 AF 4 LYS A1204 ILE A1205 -1 O LYS A1204 N ALA A1263 SHEET 1 AG 7 TYR A1122 ASN A1126 0 SHEET 2 AG 7 TYR A1133 LYS A1137 -1 O TYR A1133 N ASN A1126 SHEET 3 AG 7 ILE A1258 SER A1264 -1 O ALA A1259 N LEU A1136 SHEET 4 AG 7 ASP A1246 PHE A1255 -1 O PHE A1249 N SER A1264 SHEET 5 AG 7 CYS A1235 GLN A1240 -1 O MET A1237 N ILE A1250 SHEET 6 AG 7 VAL A1220 SER A1225 -1 O VAL A1220 N GLN A1240 SHEET 7 AG 7 ARG A1179 VAL A1185 -1 O VAL A1180 N VAL A1221 SHEET 1 AH 2 SER A1142 THR A1145 0 SHEET 2 AH 2 TYR A1149 SER A1152 -1 O TYR A1149 N THR A1145 CISPEP 1 GLY A 1138 PRO A 1139 0 10.10 CRYST1 73.000 114.500 105.800 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013699 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008734 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009452 0.00000