HEADER SUGAR BINDING PROTEIN 02-JUN-08 2VUZ TITLE CRYSTAL STRUCTURE OF CODAKINE IN COMPLEX WITH BIANTENNARY TITLE 2 NONASACCHARIDE AT 1.7A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CODAKINE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 20-148 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CODAKIA ORBICULARIS; SOURCE 3 ORGANISM_TAXID: 13016 KEYWDS NONASACCHARIDE, CODAKIA ORBICULARIS, SUGAR-BINDING PROTEIN, C-TYPE, KEYWDS 2 LECTIN, CODAKINE, BIANTENNARY, INVERTEBRATE, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.P.GOURDINE,G.C.CIOCI,L.MIGUET,C.UNVERZAGT,A.VARROT,C.GAUTHIER, AUTHOR 2 E.J.SMITH-RAVIN,A.IMBERTY REVDAT 7 13-DEC-23 2VUZ 1 HETSYN LINK REVDAT 6 29-JUL-20 2VUZ 1 COMPND REMARK HETNAM SSBOND REVDAT 6 2 1 LINK SITE ATOM REVDAT 5 12-JUL-17 2VUZ 1 REVDAT 4 24-FEB-09 2VUZ 1 VERSN REVDAT 3 04-NOV-08 2VUZ 1 JRNL MODRES HET HETNAM REVDAT 3 2 1 FORMUL LINK HETATM CONECT REVDAT 3 3 1 MASTER REVDAT 2 19-AUG-08 2VUZ 1 AUTHOR JRNL REMARK REVDAT 1 05-AUG-08 2VUZ 0 JRNL AUTH J.P.GOURDINE,G.C.CIOCI,L.MIGUET,C.UNVERZAGT,D.V.SILVA, JRNL AUTH 2 A.VARROT,C.GAUTIER,E.J.SMITH-RAVIN,A.IMBERTY JRNL TITL HIGH AFFINITY INTERACTION BETWEEN A BIVALVE C-TYPE LECTIN JRNL TITL 2 AND A BIANTENNARY COMPLEX-TYPE N-GLYCAN REVEALED BY JRNL TITL 3 CRYSTALLOGRAPHY AND MICROCALORIMETRY. JRNL REF J.BIOL.CHEM. V. 283 30112 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18687680 JRNL DOI 10.1074/JBC.M804353200 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 16302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 874 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1171 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 997 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 109 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.28000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -1.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.773 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1178 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 769 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1618 ; 1.763 ; 2.016 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1844 ; 0.980 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 136 ; 6.997 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 54 ;38.288 ;25.185 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 151 ;14.863 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;10.068 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 174 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1280 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 231 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 242 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 850 ; 0.200 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 559 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 580 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 87 ; 0.173 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.388 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 32 ; 0.254 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.144 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 676 ; 1.141 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1036 ; 1.792 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 599 ; 2.306 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 581 ; 3.250 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VUZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1290036457. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97618 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17204 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 34.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2VUV REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE IN 100 MM SODIUM REMARK 280 ACETATE PH 7.5 WITH 15% PEG 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.86900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.86900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 16.08150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.09850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 16.08150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.09850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.86900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 16.08150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.09850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.86900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 16.08150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.09850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 349 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 115 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 10 -117.11 37.28 REMARK 500 ASP A 85 -71.33 -111.23 REMARK 500 ARG A 88 32.07 -143.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 93 OE1 REMARK 620 2 ASN A 95 OD1 76.1 REMARK 620 3 GLU A 101 OE1 144.0 71.7 REMARK 620 4 ASN A 112 OD1 67.2 142.5 145.6 REMARK 620 5 ASP A 113 O 134.6 137.9 68.6 77.4 REMARK 620 6 ASP A 113 OD1 79.0 91.4 86.0 89.0 72.6 REMARK 620 7 MAN B 6 O3 75.7 77.6 111.8 86.0 130.3 154.2 REMARK 620 8 MAN B 6 O4 133.2 118.5 77.9 83.7 65.7 138.3 66.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VUV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CODAKINE AT 1.3A RESOLUTION DBREF 2VUZ A 1 129 UNP Q3KVL7 Q3KVL7_9BIVA 20 148 SEQADV 2VUZ LYS A 54 UNP Q3KVL7 ARG 73 CONFLICT SEQRES 1 A 129 GLY CYS PRO ASP GLY TRP THR GLN PHE LEU ASP LEU CYS SEQRES 2 A 129 TYR ILE TYR GLN SER ALA LYS ALA SER TRP ALA SER ALA SEQRES 3 A 129 GLN SER SER CYS GLN ALA LEU GLY GLY ILE LEU ALA GLU SEQRES 4 A 129 PRO ASP THR ALA CYS GLU ASN GLU VAL LEU ILE HIS MET SEQRES 5 A 129 CYS LYS GLU ASN GLY ASP ALA GLY SER PHE GLY PRO TRP SEQRES 6 A 129 LEU GLY GLY GLN LYS VAL GLY GLY ALA TRP GLN TRP SER SEQRES 7 A 129 SER SER GLY ALA ALA PHE ASP TYR LEU ARG TRP GLY HYP SEQRES 8 A 129 ASN GLU PRO ASN ASN SER GLY GLY ASN GLU ASP CYS LEU SEQRES 9 A 129 HIS TYR ASN TRP LEU SER TRP ASN ASP LEU ARG CYS HIS SEQRES 10 A 129 TYR GLN ALA SER TYR LEU CYS GLN ARG ALA ALA GLU MODRES 2VUZ HYP A 91 PRO 4-HYDROXYPROLINE HET HYP A 91 8 HET NAG B 1 15 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET NAG B 5 14 HET MAN B 6 11 HET NAG B 7 14 HET CA A 201 1 HET GOL A 209 6 HET GOL A 210 6 HET GOL A 211 6 HETNAM HYP 4-HYDROXYPROLINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN HYP HYDROXYPROLINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 HYP C5 H9 N O3 FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN 2(C6 H12 O6) FORMUL 3 CA CA 2+ FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 HOH *121(H2 O) HELIX 1 1 SER A 22 LEU A 33 1 12 HELIX 2 2 THR A 42 ASN A 56 1 15 SHEET 1 AA 4 THR A 7 PHE A 9 0 SHEET 2 AA 4 LEU A 12 ALA A 21 -1 O LEU A 12 N PHE A 9 SHEET 3 AA 4 ALA A 120 ALA A 127 -1 O ALA A 120 N ALA A 21 SHEET 4 AA 4 ILE A 36 LEU A 37 -1 O ILE A 36 N GLN A 125 SHEET 1 AB 4 ALA A 74 TRP A 77 0 SHEET 2 AB 4 TRP A 65 VAL A 71 -1 O GLN A 69 N GLN A 76 SHEET 3 AB 4 CYS A 103 ASN A 107 -1 O LEU A 104 N LEU A 66 SHEET 4 AB 4 SER A 110 LEU A 114 -1 O SER A 110 N ASN A 107 SSBOND 1 CYS A 2 CYS A 13 1555 1555 2.05 SSBOND 2 CYS A 30 CYS A 124 1555 1555 2.05 SSBOND 3 CYS A 44 CYS A 44 1555 4555 2.34 SSBOND 4 CYS A 103 CYS A 116 1555 1555 2.05 LINK C GLY A 90 N HYP A 91 1555 1555 1.35 LINK C HYP A 91 N ASN A 92 1555 1555 1.35 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.40 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.41 LINK O6 BMA B 3 C1 MAN B 6 1555 1555 1.42 LINK O2 MAN B 4 C1 NAG B 5 1555 1555 1.42 LINK O2 MAN B 6 C1 NAG B 7 1555 1555 1.42 LINK OE1 GLU A 93 CA CA A 201 1555 1555 2.70 LINK OD1 ASN A 95 CA CA A 201 1555 1555 2.35 LINK OE1 GLU A 101 CA CA A 201 1555 1555 2.58 LINK OD1 ASN A 112 CA CA A 201 1555 1555 2.40 LINK O ASP A 113 CA CA A 201 1555 1555 2.61 LINK OD1 ASP A 113 CA CA A 201 1555 1555 2.32 LINK CA CA A 201 O3 MAN B 6 1555 1555 2.48 LINK CA CA A 201 O4 MAN B 6 1555 1555 2.65 CISPEP 1 GLU A 93 PRO A 94 0 -4.02 CRYST1 32.163 100.197 95.738 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031092 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009980 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010445 0.00000