HEADER ISOMERASE 10-JUN-08 2VVO TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RIBOSE-5-PHOSPHATE TITLE 2 ISOMERASE B IN COMPLEX WITH ALPHA D-ALLOSE 6-PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSE-5-PHOSPHATE ISOMERASE B; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: RIBOSE-5-PHOSPHATE ISOMERASE, PHOSPHORIBOISOMERASE B; COMPND 5 EC: 5.3.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCRT7 KEYWDS RPIB, RV2465C, ISOMERASE, RARE SUGAR, CARBOHYDRATE METABOLISM, KEYWDS 2 PENTOSE PHOSPHATE PATHWAY EXPDTA X-RAY DIFFRACTION AUTHOR A.K.ROOS,S.MARIANO,E.KOWALINSKI,L.SALMON,S.L.MOWBRAY REVDAT 5 13-DEC-23 2VVO 1 HETSYN REVDAT 4 29-JUL-20 2VVO 1 REMARK SITE REVDAT 3 24-FEB-09 2VVO 1 VERSN REVDAT 2 09-SEP-08 2VVO 1 JRNL REVDAT 1 01-JUL-08 2VVO 0 JRNL AUTH A.K.ROOS,S.MARIANO,E.KOWALINSKI,L.SALMON,S.L.MOWBRAY JRNL TITL D-RIBOSE-5-PHOSPHATE ISOMERASE B FROM ESCHERICHIA COLI IS JRNL TITL 2 ALSO A FUNCTIONAL D-ALLOSE-6-PHOSPHATE ISOMERASE, WHILE THE JRNL TITL 3 MYCOBACTERIUM TUBERCULOSIS ENZYME IS NOT. JRNL REF J.MOL.BIOL. V. 382 667 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18640127 JRNL DOI 10.1016/J.JMB.2008.06.090 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.600 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 3 NUMBER OF REFLECTIONS : 62048 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3307 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2786 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5897 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.57000 REMARK 3 B22 (A**2) : -0.39000 REMARK 3 B33 (A**2) : 0.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.17000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.130 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.332 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6102 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4047 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8309 ; 1.441 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9822 ; 1.002 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 775 ; 6.043 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 280 ;32.274 ;23.214 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 920 ;13.148 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 55 ;17.016 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 925 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6908 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1225 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1206 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4175 ; 0.205 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2921 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2978 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 341 ; 0.133 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.082 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 53 ; 0.323 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.132 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4212 ; 1.082 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6139 ; 1.361 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2426 ; 2.463 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2170 ; 3.675 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VVO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1290036516. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.94 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65360 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 60.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5 REMARK 200 STARTING MODEL: PDB ENTRY 1USL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M TRI-NA CITRATE, 0.1M NA CACODYLATE REMARK 280 PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.37200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.25050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.37200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 46.25050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 152.74400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D2029 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 159 REMARK 465 ALA A 160 REMARK 465 PRO A 161 REMARK 465 ALA A 162 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 159 REMARK 465 ALA B 160 REMARK 465 PRO B 161 REMARK 465 ALA B 162 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 ALA C 160 REMARK 465 PRO C 161 REMARK 465 ALA C 162 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 ALA D 160 REMARK 465 PRO D 161 REMARK 465 ALA D 162 REMARK 465 MET E 1 REMARK 465 SER E 2 REMARK 465 GLY E 159 REMARK 465 ALA E 160 REMARK 465 PRO E 161 REMARK 465 ALA E 162 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY C 159 CA C O REMARK 470 GLY D 159 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 104 46.89 38.84 REMARK 500 ASN B 104 46.84 39.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BES RELATED DB: PDB REMARK 900 STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RIBOSE- 5-PHOSPHATE REMARK 900 ISOMERASE, RPIB, RV2465C, IN COMPLEX WITH 4-PHOSPHO-D- REMARK 900 ERYTHRONOHYDROXAMIC ACID. REMARK 900 RELATED ID: 1USL RELATED DB: PDB REMARK 900 STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RIBOSE- 5-PHOSPHATE REMARK 900 ISOMERASE, RPIB, RV2465C, COMPLEXED WITH PHOSPHATE. REMARK 900 RELATED ID: 2BET RELATED DB: PDB REMARK 900 STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RIBOSE- 5-PHOSPHATE REMARK 900 ISOMERASE, RPIB, RV2465C, IN COMPLEX WITH 4-PHOSPHO-D-ERYTHRONATE. REMARK 900 RELATED ID: 2VVQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RIBOSE-5-PHOSPHATE REMARK 900 ISOMERASE B IN COMPLEX WITH THE INHIBITOR 5-DEOXY-5-PHOSPHO-D- REMARK 900 RIBONATE REMARK 900 RELATED ID: 2VVP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RIBOSE-5-PHOSPHATE REMARK 900 ISOMERASE B IN COMPLEX WITH ITS SUBSTRATES RIBOSE 5-PHOSPHATE AND REMARK 900 RIBULOSE 5-PHOSPHATE DBREF 2VVO A 1 162 UNP Q79FD7 RPIB_MYCTU 1 162 DBREF 2VVO B 1 162 UNP Q79FD7 RPIB_MYCTU 1 162 DBREF 2VVO C 1 162 UNP Q79FD7 RPIB_MYCTU 1 162 DBREF 2VVO D 1 162 UNP Q79FD7 RPIB_MYCTU 1 162 DBREF 2VVO E 1 162 UNP Q79FD7 RPIB_MYCTU 1 162 SEQRES 1 A 162 MET SER GLY MET ARG VAL TYR LEU GLY ALA ASP HIS ALA SEQRES 2 A 162 GLY TYR GLU LEU LYS GLN ARG ILE ILE GLU HIS LEU LYS SEQRES 3 A 162 GLN THR GLY HIS GLU PRO ILE ASP CYS GLY ALA LEU ARG SEQRES 4 A 162 TYR ASP ALA ASP ASP ASP TYR PRO ALA PHE CYS ILE ALA SEQRES 5 A 162 ALA ALA THR ARG THR VAL ALA ASP PRO GLY SER LEU GLY SEQRES 6 A 162 ILE VAL LEU GLY GLY SER GLY ASN GLY GLU GLN ILE ALA SEQRES 7 A 162 ALA ASN LYS VAL PRO GLY ALA ARG CYS ALA LEU ALA TRP SEQRES 8 A 162 SER VAL GLN THR ALA ALA LEU ALA ARG GLU HIS ASN ASN SEQRES 9 A 162 ALA GLN LEU ILE GLY ILE GLY GLY ARG MET HIS THR VAL SEQRES 10 A 162 ALA GLU ALA LEU ALA ILE VAL ASP ALA PHE VAL THR THR SEQRES 11 A 162 PRO TRP SER LYS ALA GLN ARG HIS GLN ARG ARG ILE ASP SEQRES 12 A 162 ILE LEU ALA GLU TYR GLU ARG THR HIS GLU ALA PRO PRO SEQRES 13 A 162 VAL PRO GLY ALA PRO ALA SEQRES 1 B 162 MET SER GLY MET ARG VAL TYR LEU GLY ALA ASP HIS ALA SEQRES 2 B 162 GLY TYR GLU LEU LYS GLN ARG ILE ILE GLU HIS LEU LYS SEQRES 3 B 162 GLN THR GLY HIS GLU PRO ILE ASP CYS GLY ALA LEU ARG SEQRES 4 B 162 TYR ASP ALA ASP ASP ASP TYR PRO ALA PHE CYS ILE ALA SEQRES 5 B 162 ALA ALA THR ARG THR VAL ALA ASP PRO GLY SER LEU GLY SEQRES 6 B 162 ILE VAL LEU GLY GLY SER GLY ASN GLY GLU GLN ILE ALA SEQRES 7 B 162 ALA ASN LYS VAL PRO GLY ALA ARG CYS ALA LEU ALA TRP SEQRES 8 B 162 SER VAL GLN THR ALA ALA LEU ALA ARG GLU HIS ASN ASN SEQRES 9 B 162 ALA GLN LEU ILE GLY ILE GLY GLY ARG MET HIS THR VAL SEQRES 10 B 162 ALA GLU ALA LEU ALA ILE VAL ASP ALA PHE VAL THR THR SEQRES 11 B 162 PRO TRP SER LYS ALA GLN ARG HIS GLN ARG ARG ILE ASP SEQRES 12 B 162 ILE LEU ALA GLU TYR GLU ARG THR HIS GLU ALA PRO PRO SEQRES 13 B 162 VAL PRO GLY ALA PRO ALA SEQRES 1 C 162 MET SER GLY MET ARG VAL TYR LEU GLY ALA ASP HIS ALA SEQRES 2 C 162 GLY TYR GLU LEU LYS GLN ARG ILE ILE GLU HIS LEU LYS SEQRES 3 C 162 GLN THR GLY HIS GLU PRO ILE ASP CYS GLY ALA LEU ARG SEQRES 4 C 162 TYR ASP ALA ASP ASP ASP TYR PRO ALA PHE CYS ILE ALA SEQRES 5 C 162 ALA ALA THR ARG THR VAL ALA ASP PRO GLY SER LEU GLY SEQRES 6 C 162 ILE VAL LEU GLY GLY SER GLY ASN GLY GLU GLN ILE ALA SEQRES 7 C 162 ALA ASN LYS VAL PRO GLY ALA ARG CYS ALA LEU ALA TRP SEQRES 8 C 162 SER VAL GLN THR ALA ALA LEU ALA ARG GLU HIS ASN ASN SEQRES 9 C 162 ALA GLN LEU ILE GLY ILE GLY GLY ARG MET HIS THR VAL SEQRES 10 C 162 ALA GLU ALA LEU ALA ILE VAL ASP ALA PHE VAL THR THR SEQRES 11 C 162 PRO TRP SER LYS ALA GLN ARG HIS GLN ARG ARG ILE ASP SEQRES 12 C 162 ILE LEU ALA GLU TYR GLU ARG THR HIS GLU ALA PRO PRO SEQRES 13 C 162 VAL PRO GLY ALA PRO ALA SEQRES 1 D 162 MET SER GLY MET ARG VAL TYR LEU GLY ALA ASP HIS ALA SEQRES 2 D 162 GLY TYR GLU LEU LYS GLN ARG ILE ILE GLU HIS LEU LYS SEQRES 3 D 162 GLN THR GLY HIS GLU PRO ILE ASP CYS GLY ALA LEU ARG SEQRES 4 D 162 TYR ASP ALA ASP ASP ASP TYR PRO ALA PHE CYS ILE ALA SEQRES 5 D 162 ALA ALA THR ARG THR VAL ALA ASP PRO GLY SER LEU GLY SEQRES 6 D 162 ILE VAL LEU GLY GLY SER GLY ASN GLY GLU GLN ILE ALA SEQRES 7 D 162 ALA ASN LYS VAL PRO GLY ALA ARG CYS ALA LEU ALA TRP SEQRES 8 D 162 SER VAL GLN THR ALA ALA LEU ALA ARG GLU HIS ASN ASN SEQRES 9 D 162 ALA GLN LEU ILE GLY ILE GLY GLY ARG MET HIS THR VAL SEQRES 10 D 162 ALA GLU ALA LEU ALA ILE VAL ASP ALA PHE VAL THR THR SEQRES 11 D 162 PRO TRP SER LYS ALA GLN ARG HIS GLN ARG ARG ILE ASP SEQRES 12 D 162 ILE LEU ALA GLU TYR GLU ARG THR HIS GLU ALA PRO PRO SEQRES 13 D 162 VAL PRO GLY ALA PRO ALA SEQRES 1 E 162 MET SER GLY MET ARG VAL TYR LEU GLY ALA ASP HIS ALA SEQRES 2 E 162 GLY TYR GLU LEU LYS GLN ARG ILE ILE GLU HIS LEU LYS SEQRES 3 E 162 GLN THR GLY HIS GLU PRO ILE ASP CYS GLY ALA LEU ARG SEQRES 4 E 162 TYR ASP ALA ASP ASP ASP TYR PRO ALA PHE CYS ILE ALA SEQRES 5 E 162 ALA ALA THR ARG THR VAL ALA ASP PRO GLY SER LEU GLY SEQRES 6 E 162 ILE VAL LEU GLY GLY SER GLY ASN GLY GLU GLN ILE ALA SEQRES 7 E 162 ALA ASN LYS VAL PRO GLY ALA ARG CYS ALA LEU ALA TRP SEQRES 8 E 162 SER VAL GLN THR ALA ALA LEU ALA ARG GLU HIS ASN ASN SEQRES 9 E 162 ALA GLN LEU ILE GLY ILE GLY GLY ARG MET HIS THR VAL SEQRES 10 E 162 ALA GLU ALA LEU ALA ILE VAL ASP ALA PHE VAL THR THR SEQRES 11 E 162 PRO TRP SER LYS ALA GLN ARG HIS GLN ARG ARG ILE ASP SEQRES 12 E 162 ILE LEU ALA GLU TYR GLU ARG THR HIS GLU ALA PRO PRO SEQRES 13 E 162 VAL PRO GLY ALA PRO ALA HET A6P A 200 16 HET A6P B 200 16 HET A6P C 200 16 HET A6P D 200 16 HET A6P E 200 16 HETNAM A6P 6-O-PHOSPHONO-ALPHA-D-ALLOPYRANOSE HETSYN A6P 6-O-PHOSPHONO-ALPHA-D-ALLOSE; 6-O-PHOSPHONO-D-ALLOSE; HETSYN 2 A6P 6-O-PHOSPHONO-ALLOSE FORMUL 6 A6P 5(C6 H13 O9 P) FORMUL 11 HOH *420(H2 O) HELIX 1 1 GLY A 14 THR A 28 1 15 HELIX 2 2 TYR A 46 ASP A 60 1 15 HELIX 3 3 GLY A 72 LYS A 81 1 10 HELIX 4 4 SER A 92 ASN A 104 1 13 HELIX 5 5 THR A 116 THR A 130 1 15 HELIX 6 6 ALA A 135 HIS A 152 1 18 HELIX 7 7 GLY B 14 THR B 28 1 15 HELIX 8 8 ASP B 45 ASP B 60 1 16 HELIX 9 9 GLY B 72 LYS B 81 1 10 HELIX 10 10 SER B 92 ASN B 104 1 13 HELIX 11 11 ARG B 113 HIS B 115 5 3 HELIX 12 12 THR B 116 THR B 130 1 15 HELIX 13 13 ALA B 135 HIS B 152 1 18 HELIX 14 14 ASP C 11 THR C 28 1 18 HELIX 15 15 ASP C 45 ALA C 59 1 15 HELIX 16 16 GLY C 72 LYS C 81 1 10 HELIX 17 17 SER C 92 ASN C 104 1 13 HELIX 18 18 THR C 116 THR C 130 1 15 HELIX 19 19 ALA C 135 HIS C 152 1 18 HELIX 20 20 GLY D 14 THR D 28 1 15 HELIX 21 21 TYR D 46 ASP D 60 1 15 HELIX 22 22 GLY D 72 LYS D 81 1 10 HELIX 23 23 SER D 92 HIS D 102 1 11 HELIX 24 24 ARG D 113 HIS D 115 5 3 HELIX 25 25 THR D 116 THR D 130 1 15 HELIX 26 26 ALA D 135 HIS D 152 1 18 HELIX 27 27 ASP E 11 THR E 28 1 18 HELIX 28 28 TYR E 46 ALA E 59 1 14 HELIX 29 29 GLY E 72 LYS E 81 1 10 HELIX 30 30 SER E 92 ASN E 104 1 13 HELIX 31 31 THR E 116 THR E 130 1 15 HELIX 32 32 ALA E 135 HIS E 152 1 18 SHEET 1 AA 5 GLU A 31 ASP A 34 0 SHEET 2 AA 5 ARG A 5 ALA A 10 1 O VAL A 6 N ILE A 33 SHEET 3 AA 5 LEU A 64 GLY A 69 1 O LEU A 64 N TYR A 7 SHEET 4 AA 5 LEU A 107 GLY A 111 1 O ILE A 108 N VAL A 67 SHEET 5 AA 5 CYS A 87 LEU A 89 1 O ALA A 88 N GLY A 109 SHEET 1 BA 5 GLU B 31 ASP B 34 0 SHEET 2 BA 5 ARG B 5 ALA B 10 1 O VAL B 6 N ILE B 33 SHEET 3 BA 5 LEU B 64 GLY B 69 1 O LEU B 64 N TYR B 7 SHEET 4 BA 5 LEU B 107 GLY B 111 1 O ILE B 108 N VAL B 67 SHEET 5 BA 5 CYS B 87 LEU B 89 1 O ALA B 88 N GLY B 109 SHEET 1 CA 5 GLU C 31 ASP C 34 0 SHEET 2 CA 5 ARG C 5 ALA C 10 1 O VAL C 6 N ILE C 33 SHEET 3 CA 5 LEU C 64 GLY C 69 1 O LEU C 64 N TYR C 7 SHEET 4 CA 5 LEU C 107 GLY C 111 1 O ILE C 108 N VAL C 67 SHEET 5 CA 5 CYS C 87 LEU C 89 1 O ALA C 88 N GLY C 109 SHEET 1 DA 5 GLU D 31 ASP D 34 0 SHEET 2 DA 5 ARG D 5 ALA D 10 1 O VAL D 6 N ILE D 33 SHEET 3 DA 5 LEU D 64 GLY D 69 1 O LEU D 64 N TYR D 7 SHEET 4 DA 5 LEU D 107 GLY D 111 1 O ILE D 108 N VAL D 67 SHEET 5 DA 5 CYS D 87 LEU D 89 1 O ALA D 88 N GLY D 109 SHEET 1 EA 5 GLU E 31 ASP E 34 0 SHEET 2 EA 5 ARG E 5 ALA E 10 1 O VAL E 6 N ILE E 33 SHEET 3 EA 5 LEU E 64 GLY E 69 1 O LEU E 64 N TYR E 7 SHEET 4 EA 5 LEU E 107 GLY E 111 1 O ILE E 108 N VAL E 67 SHEET 5 EA 5 CYS E 87 LEU E 89 1 O ALA E 88 N GLY E 109 CISPEP 1 GLY A 36 ALA A 37 0 -0.69 CISPEP 2 GLY B 36 ALA B 37 0 -1.21 CISPEP 3 GLY C 36 ALA C 37 0 -3.12 CISPEP 4 GLY D 36 ALA D 37 0 2.56 CISPEP 5 GLY E 36 ALA E 37 0 -0.77 CRYST1 152.744 92.501 60.967 90.00 98.92 90.00 C 1 2 1 20 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006547 0.000000 0.001028 0.00000 SCALE2 0.000000 0.010811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016603 0.00000 MTRIX1 1 0.752080 -0.616030 0.234250 7.87969 1 MTRIX2 1 -0.615760 -0.783500 -0.083480 12.88402 1 MTRIX3 1 0.234960 -0.081460 -0.968580 -25.07828 1 MTRIX1 2 -0.309240 0.950550 0.028900 67.18098 1 MTRIX2 2 0.942780 0.302450 0.140300 -41.92689 1 MTRIX3 2 0.124620 0.070630 -0.989690 9.72190 1 MTRIX1 3 -0.816350 -0.547470 -0.183980 76.42657 1 MTRIX2 3 0.544430 -0.835770 0.071270 -33.62962 1 MTRIX3 3 -0.192790 -0.041990 0.980340 36.83132 1 MTRIX1 4 0.345280 0.933640 -0.095430 67.66603 1 MTRIX2 4 -0.934040 0.331950 -0.131830 50.98852 1 MTRIX3 4 -0.091410 0.134650 0.986670 12.07473 1