HEADER HYDROLASE 11-JUN-08 2VVS TITLE BTGH84 STRUCTURE IN COMPLEX WITH PUGNAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: O-GLCNACASE BT_4395; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-HEXOSAMINIDASE, HEXOSAMINIDASE B, N-ACETYL-BETA- COMPND 5 GLUCOSAMINIDASE, GH84, BTGH84, BETA-N-ACETYLHEXOSAMINIDASE; COMPND 6 EC: 3.2.1.52; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON VPI-5482; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS HYDROLASE, INHIBITOR, GLYCOSIDE HYDROLASE, O-GLCNAC EXPDTA X-RAY DIFFRACTION AUTHOR M.S.MACAULEY,A.BUBB,C.MARTINEZ-FLEITES,G.J.DAVIES,D.J.VOCADLO REVDAT 5 13-DEC-23 2VVS 1 REMARK REVDAT 4 24-AUG-11 2VVS 1 REMARK HETSYN SITE REVDAT 3 13-JUL-11 2VVS 1 VERSN REVDAT 2 16-DEC-08 2VVS 1 VERSN JRNL REVDAT 1 30-SEP-08 2VVS 0 JRNL AUTH M.S.MACAULEY,A.BUBB,C.MARTINEZ-FLEITES,G.J.DAVIES, JRNL AUTH 2 D.J.VOCADLO JRNL TITL ELEVATION OF GLOBAL O-GLCNAC LEVELS IN 3T3-L1 ADIPOCYTES BY JRNL TITL 2 SELECTIVE INHIBITION OF O-GLCNACASE DOES NOT INDUCE INSULIN JRNL TITL 3 RESISTANCE JRNL REF J.BIOL.CHEM. V. 283 34687 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18842583 JRNL DOI 10.1074/JBC.M804525200 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0065 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 35132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1845 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2540 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4724 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.258 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.206 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.184 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.854 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4879 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6621 ; 1.557 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 580 ; 6.530 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 245 ;37.971 ;24.857 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 835 ;18.746 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;14.392 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 695 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3776 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2903 ; 0.651 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4703 ; 1.171 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1976 ; 2.026 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1917 ; 3.210 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 128 REMARK 3 ORIGIN FOR THE GROUP (A): -45.5557 0.9334 11.9473 REMARK 3 T TENSOR REMARK 3 T11: -0.1253 T22: 0.1292 REMARK 3 T33: -0.0309 T12: 0.1328 REMARK 3 T13: -0.0036 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 7.2339 L22: 3.5529 REMARK 3 L33: 3.8860 L12: 1.1310 REMARK 3 L13: 0.7599 L23: -0.4020 REMARK 3 S TENSOR REMARK 3 S11: -0.1924 S12: -0.2592 S13: 0.3074 REMARK 3 S21: 0.1037 S22: 0.0278 S23: 0.6704 REMARK 3 S31: -0.3849 S32: -0.8112 S33: 0.1646 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 129 A 459 REMARK 3 ORIGIN FOR THE GROUP (A): -16.8252 -8.6519 8.6053 REMARK 3 T TENSOR REMARK 3 T11: -0.2652 T22: -0.1701 REMARK 3 T33: -0.2023 T12: 0.0234 REMARK 3 T13: 0.0947 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 2.0776 L22: 1.7023 REMARK 3 L33: 2.8723 L12: 0.1713 REMARK 3 L13: 1.1152 L23: 0.2252 REMARK 3 S TENSOR REMARK 3 S11: -0.1058 S12: 0.3291 S13: -0.0347 REMARK 3 S21: -0.0256 S22: -0.0053 S23: -0.0980 REMARK 3 S31: -0.0470 S32: 0.2517 S33: 0.1111 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 460 A 592 REMARK 3 ORIGIN FOR THE GROUP (A): 0.5975 11.5318 31.8888 REMARK 3 T TENSOR REMARK 3 T11: 0.2437 T22: 0.0298 REMARK 3 T33: 0.0408 T12: -0.1755 REMARK 3 T13: -0.2760 T23: 0.1845 REMARK 3 L TENSOR REMARK 3 L11: 2.3043 L22: 3.4538 REMARK 3 L33: 4.6251 L12: 0.8524 REMARK 3 L13: 2.0232 L23: 0.7946 REMARK 3 S TENSOR REMARK 3 S11: -0.6075 S12: 0.2652 S13: 0.5933 REMARK 3 S21: 0.1579 S22: -0.1122 S23: -0.4551 REMARK 3 S31: -1.2428 S32: 0.8907 S33: 0.7197 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VVS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1290036540. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97890 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36980 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 64.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2CHO REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3M NH4AC, 20% GLYCEROL, 0.1M MES PH REMARK 280 6.0, 15% PEG3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 92.82000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.67000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 92.82000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.67000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 LYS A -19 REMARK 465 ASN A -18 REMARK 465 ASN A -17 REMARK 465 LYS A -16 REMARK 465 ILE A -15 REMARK 465 TYR A -14 REMARK 465 LEU A -13 REMARK 465 LEU A -12 REMARK 465 GLY A -11 REMARK 465 ALA A -10 REMARK 465 CYS A -9 REMARK 465 LEU A -8 REMARK 465 LEU A -7 REMARK 465 CYS A -6 REMARK 465 ALA A -5 REMARK 465 VAL A -4 REMARK 465 THR A -3 REMARK 465 THR A -2 REMARK 465 PHE A -1 REMARK 465 ALA A 0 REMARK 465 GLN A 1 REMARK 465 ASN A 2 REMARK 465 VAL A 3 REMARK 465 SER A 4 REMARK 465 SER A 46 REMARK 465 GLY A 47 REMARK 465 LYS A 48 REMARK 465 GLN A 49 REMARK 465 SER A 50 REMARK 465 SER A 51 REMARK 465 LYS A 52 REMARK 465 LYS A 53 REMARK 465 HIS A 593 REMARK 465 LYS A 594 REMARK 465 MET A 595 REMARK 465 ILE A 596 REMARK 465 SER A 597 REMARK 465 ASN A 598 REMARK 465 VAL A 599 REMARK 465 GLU A 600 REMARK 465 GLN A 601 REMARK 465 ILE A 602 REMARK 465 LYS A 603 REMARK 465 ASN A 604 REMARK 465 LEU A 605 REMARK 465 PRO A 606 REMARK 465 LEU A 607 REMARK 465 GLN A 608 REMARK 465 VAL A 609 REMARK 465 LYS A 610 REMARK 465 ALA A 611 REMARK 465 ASN A 612 REMARK 465 ARG A 613 REMARK 465 VAL A 614 REMARK 465 LEU A 615 REMARK 465 ILE A 616 REMARK 465 SER A 617 REMARK 465 PRO A 618 REMARK 465 ALA A 619 REMARK 465 ASN A 620 REMARK 465 GLU A 621 REMARK 465 VAL A 622 REMARK 465 VAL A 623 REMARK 465 LYS A 624 REMARK 465 TRP A 625 REMARK 465 ALA A 626 REMARK 465 ALA A 627 REMARK 465 GLY A 628 REMARK 465 ASN A 629 REMARK 465 SER A 630 REMARK 465 VAL A 631 REMARK 465 GLU A 632 REMARK 465 ILE A 633 REMARK 465 GLU A 634 REMARK 465 LEU A 635 REMARK 465 ASP A 636 REMARK 465 ALA A 637 REMARK 465 ILE A 638 REMARK 465 TYR A 639 REMARK 465 PRO A 640 REMARK 465 GLY A 641 REMARK 465 GLU A 642 REMARK 465 ASN A 643 REMARK 465 ILE A 644 REMARK 465 GLN A 645 REMARK 465 ILE A 646 REMARK 465 ASN A 647 REMARK 465 PHE A 648 REMARK 465 GLY A 649 REMARK 465 LYS A 650 REMARK 465 ASP A 651 REMARK 465 ALA A 652 REMARK 465 PRO A 653 REMARK 465 CYS A 654 REMARK 465 THR A 655 REMARK 465 TRP A 656 REMARK 465 GLY A 657 REMARK 465 ARG A 658 REMARK 465 LEU A 659 REMARK 465 GLU A 660 REMARK 465 ILE A 661 REMARK 465 SER A 662 REMARK 465 THR A 663 REMARK 465 ASP A 664 REMARK 465 GLY A 665 REMARK 465 LYS A 666 REMARK 465 GLU A 667 REMARK 465 TRP A 668 REMARK 465 LYS A 669 REMARK 465 THR A 670 REMARK 465 VAL A 671 REMARK 465 ASP A 672 REMARK 465 LEU A 673 REMARK 465 LYS A 674 REMARK 465 GLN A 675 REMARK 465 LYS A 676 REMARK 465 GLU A 677 REMARK 465 SER A 678 REMARK 465 ARG A 679 REMARK 465 LEU A 680 REMARK 465 SER A 681 REMARK 465 ALA A 682 REMARK 465 GLY A 683 REMARK 465 LEU A 684 REMARK 465 GLN A 685 REMARK 465 LYS A 686 REMARK 465 ALA A 687 REMARK 465 PRO A 688 REMARK 465 VAL A 689 REMARK 465 LYS A 690 REMARK 465 PHE A 691 REMARK 465 VAL A 692 REMARK 465 ARG A 693 REMARK 465 PHE A 694 REMARK 465 THR A 695 REMARK 465 ASN A 696 REMARK 465 VAL A 697 REMARK 465 SER A 698 REMARK 465 ASP A 699 REMARK 465 GLU A 700 REMARK 465 GLU A 701 REMARK 465 GLN A 702 REMARK 465 GLN A 703 REMARK 465 VAL A 704 REMARK 465 TYR A 705 REMARK 465 LEU A 706 REMARK 465 ARG A 707 REMARK 465 GLN A 708 REMARK 465 PHE A 709 REMARK 465 VAL A 710 REMARK 465 LEU A 711 REMARK 465 THR A 712 REMARK 465 ILE A 713 REMARK 465 GLU A 714 REMARK 465 LYS A 715 REMARK 465 LYS A 716 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 580 CE1 PHE A 580 CZ 0.207 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 45 CA - CB - CG ANGL. DEV. = 16.2 DEGREES REMARK 500 LEU A 104 CA - CB - CG ANGL. DEV. = -16.2 DEGREES REMARK 500 ASN A 520 CB - CA - C ANGL. DEV. = 14.2 DEGREES REMARK 500 PHE A 580 CD1 - CG - CD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 PHE A 580 CB - CG - CD1 ANGL. DEV. = -8.2 DEGREES REMARK 500 PHE A 580 CG - CD1 - CE1 ANGL. DEV. = -7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 172 -167.68 -103.64 REMARK 500 PHE A 265 -72.85 -138.23 REMARK 500 ASP A 271 37.07 -146.43 REMARK 500 ASN A 273 -75.49 -90.50 REMARK 500 VAL A 346 57.83 -144.89 REMARK 500 ALA A 414 42.72 -142.57 REMARK 500 SER A 426 -38.03 -133.30 REMARK 500 SER A 426 -32.98 -135.99 REMARK 500 GLU A 517 33.41 -89.26 REMARK 500 TYR A 550 -61.90 -103.57 REMARK 500 VAL A 560 -54.84 -128.67 REMARK 500 ASN A 581 77.73 52.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 460 0.09 SIDE CHAIN REMARK 500 PHE A 576 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OAN A 900 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VVN RELATED DB: PDB REMARK 900 BTGH84 IN COMPLEX WITH NH-BUTYLTHIAZOLINE REMARK 900 RELATED ID: 2JIW RELATED DB: PDB REMARK 900 BACTEROIDES THETAIOTAOMICRON GH84 O-GLCNACASE IN COMPLEX WITH 2- REMARK 900 ACETYLAMINO-2-DEOXY-1- EPIVALIENAMINE REMARK 900 RELATED ID: 2CHN RELATED DB: PDB REMARK 900 BACTEROIDES THETAIOTAOMICRON HEXOSAMINIDASE WITH O-GLCNACASE REMARK 900 ACTIVITY REMARK 900 RELATED ID: 2J4G RELATED DB: PDB REMARK 900 BACTEROIDES THETAIOTAOMICRON GH84 O-GLCNACASE IN COMPLEX WITH N- REMARK 900 BUTYL-THIAZOLINE INHIBITOR REMARK 900 RELATED ID: 2J47 RELATED DB: PDB REMARK 900 BACTEROIDES THETAIOTAOMICRON GH84 O-GLCNACASE IN COMPLEX WITH A REMARK 900 IMIDAZOLE-PUGNAC HYBRID INHIBITOR REMARK 900 RELATED ID: 2CHO RELATED DB: PDB REMARK 900 BACTEROIDES THETAIOTAOMICRON HEXOSAMINIDASE WITH O-GLCNACASE REMARK 900 ACTIVITY DBREF 2VVS A -20 716 UNP Q89ZI2 OGA_BACTN 1 737 SEQRES 1 A 737 MET LYS ASN ASN LYS ILE TYR LEU LEU GLY ALA CYS LEU SEQRES 2 A 737 LEU CYS ALA VAL THR THR PHE ALA GLN ASN VAL SER LEU SEQRES 3 A 737 GLN PRO PRO PRO GLN GLN LEU ILE VAL GLN ASN LYS THR SEQRES 4 A 737 ILE ASP LEU PRO ALA VAL TYR GLN LEU ASN GLY GLY GLU SEQRES 5 A 737 GLU ALA ASN PRO HIS ALA VAL LYS VAL LEU LYS GLU LEU SEQRES 6 A 737 LEU SER GLY LYS GLN SER SER LYS LYS GLY MET LEU ILE SEQRES 7 A 737 SER ILE GLY GLU LYS GLY ASP LYS SER VAL ARG LYS TYR SEQRES 8 A 737 SER ARG GLN ILE PRO ASP HIS LYS GLU GLY TYR TYR LEU SEQRES 9 A 737 SER VAL ASN GLU LYS GLU ILE VAL LEU ALA GLY ASN ASP SEQRES 10 A 737 GLU ARG GLY THR TYR TYR ALA LEU GLN THR PHE ALA GLN SEQRES 11 A 737 LEU LEU LYS ASP GLY LYS LEU PRO GLU VAL GLU ILE LYS SEQRES 12 A 737 ASP TYR PRO SER VAL ARG TYR ARG GLY VAL VAL GLU GLY SEQRES 13 A 737 PHE TYR GLY THR PRO TRP SER HIS GLN ALA ARG LEU SER SEQRES 14 A 737 GLN LEU LYS PHE TYR GLY LYS ASN LYS MET ASN THR TYR SEQRES 15 A 737 ILE TYR GLY PRO LYS ASP ASP PRO TYR HIS SER ALA PRO SEQRES 16 A 737 ASN TRP ARG LEU PRO TYR PRO ASP LYS GLU ALA ALA GLN SEQRES 17 A 737 LEU GLN GLU LEU VAL ALA VAL ALA ASN GLU ASN GLU VAL SEQRES 18 A 737 ASP PHE VAL TRP ALA ILE HIS PRO GLY GLN ASP ILE LYS SEQRES 19 A 737 TRP ASN LYS GLU ASP ARG ASP LEU LEU LEU ALA LYS PHE SEQRES 20 A 737 GLU LYS MET TYR GLN LEU GLY VAL ARG SER PHE ALA VAL SEQRES 21 A 737 PHE PHE ASP ASP ILE SER GLY GLU GLY THR ASN PRO GLN SEQRES 22 A 737 LYS GLN ALA GLU LEU LEU ASN TYR ILE ASP GLU LYS PHE SEQRES 23 A 737 ALA GLN VAL LYS PRO ASP ILE ASN GLN LEU VAL MET CYS SEQRES 24 A 737 PRO THR GLU TYR ASN LYS SER TRP SER ASN PRO ASN GLY SEQRES 25 A 737 ASN TYR LEU THR THR LEU GLY ASP LYS LEU ASN PRO SER SEQRES 26 A 737 ILE GLN ILE MET TRP THR GLY ASP ARG VAL ILE SER ASP SEQRES 27 A 737 ILE THR ARG ASP GLY ILE SER TRP ILE ASN GLU ARG ILE SEQRES 28 A 737 LYS ARG PRO ALA TYR ILE TRP TRP ASN PHE PRO VAL SER SEQRES 29 A 737 ASP TYR VAL ARG ASP HIS LEU LEU LEU GLY PRO VAL TYR SEQRES 30 A 737 GLY ASN ASP THR THR ILE ALA LYS GLU MET SER GLY PHE SEQRES 31 A 737 VAL THR ASN PRO MET GLU HIS ALA GLU SER SER LYS ILE SEQRES 32 A 737 ALA ILE TYR SER VAL ALA SER TYR ALA TRP ASN PRO ALA SEQRES 33 A 737 LYS TYR ASP THR TRP GLN THR TRP LYS ASP ALA ILE ARG SEQRES 34 A 737 THR ILE LEU PRO SER ALA ALA GLU GLU LEU GLU CYS PHE SEQRES 35 A 737 ALA MET HIS ASN SER ASP LEU GLY PRO ASN GLY HIS GLY SEQRES 36 A 737 TYR ARG ARG GLU GLU SER MET ASP ILE GLN PRO ALA ALA SEQRES 37 A 737 GLU ARG PHE LEU LYS ALA PHE LYS GLU GLY LYS ASN TYR SEQRES 38 A 737 ASP LYS ALA ASP PHE GLU THR LEU GLN TYR THR PHE GLU SEQRES 39 A 737 ARG MET LYS GLU SER ALA ASP ILE LEU LEU MET ASN THR SEQRES 40 A 737 GLU ASN LYS PRO LEU ILE VAL GLU ILE THR PRO TRP VAL SEQRES 41 A 737 HIS GLN PHE LYS LEU THR ALA GLU MET GLY GLU GLU VAL SEQRES 42 A 737 LEU LYS MET VAL GLU GLY ARG ASN GLU SER TYR PHE LEU SEQRES 43 A 737 ARG LYS TYR ASN HIS VAL LYS ALA LEU GLN GLN GLN MET SEQRES 44 A 737 PHE TYR ILE ASP GLN THR SER ASN GLN ASN PRO TYR GLN SEQRES 45 A 737 PRO GLY VAL LYS THR ALA THR ARG VAL ILE LYS PRO LEU SEQRES 46 A 737 ILE ASP ARG THR PHE ALA THR VAL VAL LYS PHE PHE ASN SEQRES 47 A 737 GLN LYS PHE ASN ALA HIS LEU ASP ALA THR THR ASP TYR SEQRES 48 A 737 MET PRO HIS LYS MET ILE SER ASN VAL GLU GLN ILE LYS SEQRES 49 A 737 ASN LEU PRO LEU GLN VAL LYS ALA ASN ARG VAL LEU ILE SEQRES 50 A 737 SER PRO ALA ASN GLU VAL VAL LYS TRP ALA ALA GLY ASN SEQRES 51 A 737 SER VAL GLU ILE GLU LEU ASP ALA ILE TYR PRO GLY GLU SEQRES 52 A 737 ASN ILE GLN ILE ASN PHE GLY LYS ASP ALA PRO CYS THR SEQRES 53 A 737 TRP GLY ARG LEU GLU ILE SER THR ASP GLY LYS GLU TRP SEQRES 54 A 737 LYS THR VAL ASP LEU LYS GLN LYS GLU SER ARG LEU SER SEQRES 55 A 737 ALA GLY LEU GLN LYS ALA PRO VAL LYS PHE VAL ARG PHE SEQRES 56 A 737 THR ASN VAL SER ASP GLU GLU GLN GLN VAL TYR LEU ARG SEQRES 57 A 737 GLN PHE VAL LEU THR ILE GLU LYS LYS HET OAN A 900 25 HETNAM OAN O-(2-ACETAMIDO-2-DEOXY D-GLUCOPYRANOSYLIDENE) AMINO-N- HETNAM 2 OAN PHENYLCARBAMATE HETSYN OAN PUGNAC FORMUL 2 OAN C15 H19 N3 O7 FORMUL 3 HOH *111(H2 O) HELIX 1 1 ASN A 34 LEU A 45 1 12 HELIX 2 2 ASP A 64 SER A 71 5 8 HELIX 3 3 ASP A 96 LEU A 111 1 16 HELIX 4 4 SER A 142 ASN A 156 1 15 HELIX 5 5 PRO A 174 LEU A 178 5 5 HELIX 6 6 PRO A 181 ASN A 198 1 18 HELIX 7 7 ASN A 215 LEU A 232 1 18 HELIX 8 8 SER A 245 THR A 249 5 5 HELIX 9 9 ASN A 250 PHE A 265 1 16 HELIX 10 10 ASN A 283 SER A 287 5 5 HELIX 11 11 ASN A 292 LEU A 301 1 10 HELIX 12 12 THR A 319 LYS A 331 1 13 HELIX 13 13 ILE A 362 LYS A 364 5 3 HELIX 14 14 SER A 380 ASN A 393 1 14 HELIX 15 15 PRO A 394 TYR A 397 5 4 HELIX 16 16 ASP A 398 LEU A 411 1 14 HELIX 17 17 ALA A 414 HIS A 424 1 11 HELIX 18 18 ILE A 443 GLU A 456 1 14 HELIX 19 19 ASP A 461 MET A 484 1 24 HELIX 20 20 ASN A 488 GLU A 517 1 30 HELIX 21 21 ASN A 520 SER A 545 1 26 HELIX 22 22 VAL A 560 PHE A 580 1 21 SHEET 1 AA 6 GLN A 11 ASP A 20 0 SHEET 2 AA 6 LYS A 115 ASP A 123 -1 O LEU A 116 N ILE A 19 SHEET 3 AA 6 TYR A 81 VAL A 85 -1 O TYR A 81 N ASP A 123 SHEET 4 AA 6 GLU A 89 GLY A 94 -1 O VAL A 91 N SER A 84 SHEET 5 AA 6 MET A 55 GLU A 61 1 O LEU A 56 N ILE A 90 SHEET 6 AA 6 TYR A 25 ASN A 28 1 O GLN A 26 N ILE A 57 SHEET 1 AB 9 TYR A 129 GLU A 134 0 SHEET 2 AB 9 MET A 366 THR A 371 1 O SER A 367 N TYR A 129 SHEET 3 AB 9 ALA A 334 TRP A 338 1 O ALA A 334 N SER A 367 SHEET 4 AB 9 GLN A 306 TRP A 309 1 O ILE A 307 N TYR A 335 SHEET 5 AB 9 LEU A 275 CYS A 278 1 O LEU A 275 N GLN A 306 SHEET 6 AB 9 SER A 236 PHE A 240 1 O PHE A 237 N VAL A 276 SHEET 7 AB 9 ASP A 201 ILE A 206 1 O PHE A 202 N SER A 236 SHEET 8 AB 9 THR A 160 TYR A 163 1 O TYR A 161 N VAL A 203 SHEET 9 AB 9 TYR A 129 GLU A 134 1 O VAL A 132 N ILE A 162 CISPEP 1 GLN A 6 PRO A 7 0 -5.84 CISPEP 2 ALA A 173 PRO A 174 0 8.08 CISPEP 3 PHE A 340 PRO A 341 0 12.13 SITE 1 AC1 18 GLY A 135 PHE A 136 TYR A 137 LYS A 166 SITE 2 AC1 18 ASP A 242 ASP A 243 TYR A 282 SER A 285 SITE 3 AC1 18 TRP A 286 SER A 287 ASN A 288 PRO A 289 SITE 4 AC1 18 VAL A 314 TRP A 337 ASN A 339 ASP A 344 SITE 5 AC1 18 ASN A 372 HIS A 433 CRYST1 185.640 51.340 81.460 90.00 96.97 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005387 0.000000 0.000659 0.00000 SCALE2 0.000000 0.019478 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012367 0.00000