HEADER HYDROLASE 20-JUN-08 2VWB TITLE STRUCTURE OF THE ARCHAEAL KAE1-BUD32 FUSION PROTEIN MJ1130: A MODEL TITLE 2 FOR THE EUKARYOTIC EKC-KEOPS SUBCOMPLEX INVOLVED IN TRANSCRIPTION AND TITLE 3 TELOMERE HOMEOSTASIS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE O-SIALOGLYCOPROTEIN ENDOPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLYCOPROTEASE, MJ1130; COMPND 5 EC: 3.4.24.57; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 243232; SOURCE 4 STRAIN: DSM 2661; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-9A KEYWDS HYDROLASE, EKC, KAE1, BUD32, KEOPS, MJ1130, PROTEASE, TELOMERE, KEYWDS 2 METALLOPROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR A.HECKER,R.LOPREIATO,M.GRAILLE,B.COLLINET,P.FORTERRE,L.DOMENICO,H.VAN AUTHOR 2 TILBEURGH REVDAT 5 13-DEC-23 2VWB 1 REMARK REVDAT 4 27-JAN-16 2VWB 1 SOURCE JRNL REMARK VERSN REVDAT 3 16-FEB-11 2VWB 1 KEYWDS AUTHOR JRNL REMARK REVDAT 3 2 1 MASTER REVDAT 2 24-FEB-09 2VWB 1 VERSN REVDAT 1 19-AUG-08 2VWB 0 JRNL AUTH A.HECKER,R.LOPREIATO,M.GRAILLE,B.COLLINET,P.FORTERRE, JRNL AUTH 2 D.LIBRI,H.VAN TILBEURGH JRNL TITL STRUCTURE OF THE ARCHAEAL KAE1/BUD32 FUSION PROTEIN MJ1130: JRNL TITL 2 A MODEL FOR THE EUKARYOTIC EKC/KEOPS SUBCOMPLEX JRNL REF EMBO J. V. 27 2340 2008 JRNL REFN ISSN 0261-4189 JRNL PMID 19172740 JRNL DOI 10.1038/EMBOJ.2008.157 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 25085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1319 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1811 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8148 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.54000 REMARK 3 B22 (A**2) : -0.92000 REMARK 3 B33 (A**2) : 2.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.544 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.425 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.424 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.859 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8359 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11284 ; 1.478 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1021 ; 6.818 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 377 ;41.367 ;24.297 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1545 ;22.373 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;21.040 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1263 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6162 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4136 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5623 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 280 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.217 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.115 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5216 ; 0.540 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8181 ; 0.950 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3564 ; 1.104 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3103 ; 1.869 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THE FINAL MODEL CONTAINS RESIDUES 1-31 AND 43-530 REMARK 3 FROM MONOMER A AND RESIDUES 1-31, 43-325 AND 340-532 FROM REMARK 3 MONOMER B REMARK 4 REMARK 4 2VWB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1290036627. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9799 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26424 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: PDB ENTRY 1IVN REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, 5-10% REMARK 280 ISOPROPANOL, 0.1 M SODIUM CITRATE PH 5.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 73.70900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.47400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 73.70900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 74.47400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 32 REMARK 465 LYS A 33 REMARK 465 PRO A 34 REMARK 465 PRO A 35 REMARK 465 LYS A 36 REMARK 465 GLN A 37 REMARK 465 GLY A 38 REMARK 465 ILE A 39 REMARK 465 ASN A 40 REMARK 465 PRO A 41 REMARK 465 ARG A 42 REMARK 465 ALA A 531 REMARK 465 ARG A 532 REMARK 465 TYR A 533 REMARK 465 VAL A 534 REMARK 465 GLU A 535 REMARK 465 TYR B 32 REMARK 465 LYS B 33 REMARK 465 PRO B 34 REMARK 465 PRO B 35 REMARK 465 LYS B 36 REMARK 465 GLN B 37 REMARK 465 GLY B 38 REMARK 465 ILE B 39 REMARK 465 ASN B 40 REMARK 465 PRO B 41 REMARK 465 ARG B 42 REMARK 465 GLU B 326 REMARK 465 ILE B 327 REMARK 465 LYS B 328 REMARK 465 GLY B 329 REMARK 465 LYS B 330 REMARK 465 LYS B 331 REMARK 465 ARG B 332 REMARK 465 LYS B 333 REMARK 465 ILE B 334 REMARK 465 PRO B 335 REMARK 465 GLU B 336 REMARK 465 HIS B 337 REMARK 465 LEU B 338 REMARK 465 ILE B 339 REMARK 465 TYR B 533 REMARK 465 VAL B 534 REMARK 465 GLU B 535 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 10 -105.42 -152.31 REMARK 500 THR A 29 117.70 -160.14 REMARK 500 THR A 96 11.55 -65.86 REMARK 500 LEU A 97 -6.36 -140.30 REMARK 500 ASP A 122 86.23 -165.43 REMARK 500 SER A 129 -162.47 -160.65 REMARK 500 LYS A 141 -24.94 80.75 REMARK 500 ASP A 151 -73.06 -127.63 REMARK 500 ASN A 166 71.48 49.82 REMARK 500 GLU A 177 -74.93 -50.63 REMARK 500 SER A 200 -55.99 -26.14 REMARK 500 GLN A 224 -76.72 -63.93 REMARK 500 TYR A 226 -75.63 -66.88 REMARK 500 THR A 308 36.48 -98.32 REMARK 500 TYR A 314 98.26 -11.80 REMARK 500 MET A 318 -9.78 -52.79 REMARK 500 GLU A 320 99.13 -69.84 REMARK 500 LYS A 325 -18.08 -152.25 REMARK 500 LYS A 328 46.57 -77.53 REMARK 500 PRO A 335 -163.09 -78.69 REMARK 500 GLU A 336 -139.35 -91.04 REMARK 500 HIS A 337 19.87 -44.64 REMARK 500 ILE A 339 153.10 -34.23 REMARK 500 ASP A 403 141.39 -170.19 REMARK 500 ILE A 425 -39.75 -31.97 REMARK 500 ASP A 451 44.42 -152.65 REMARK 500 ASP A 460 -99.16 -94.96 REMARK 500 PHE A 468 37.82 -148.58 REMARK 500 HIS A 495 45.17 -140.24 REMARK 500 VAL A 513 -35.57 -130.50 REMARK 500 ARG A 516 15.72 -66.03 REMARK 500 ARG A 529 -21.10 -170.72 REMARK 500 ALA B 10 -136.31 -135.23 REMARK 500 LEU B 25 -33.33 -33.75 REMARK 500 ASN B 27 62.17 -178.90 REMARK 500 THR B 92 -70.94 -41.31 REMARK 500 PRO B 100 151.63 -47.12 REMARK 500 THR B 117 31.04 -90.39 REMARK 500 THR B 118 -20.32 -146.39 REMARK 500 GLU B 121 -46.77 -137.30 REMARK 500 SER B 129 -158.05 -165.14 REMARK 500 SER B 140 75.50 49.85 REMARK 500 ASP B 151 -97.22 -139.07 REMARK 500 ASN B 166 85.16 -14.22 REMARK 500 PRO B 168 -173.56 -65.79 REMARK 500 LYS B 181 33.26 -93.14 REMARK 500 LYS B 183 -60.35 -105.71 REMARK 500 ALA B 206 -23.54 -159.64 REMARK 500 ARG B 208 -33.25 -35.60 REMARK 500 ALA B 212 17.12 -64.25 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 169 PRO A 170 102.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 1531 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 1533 DBREF 2VWB A 1 535 UNP Q58530 GCP_METJA 1 535 DBREF 2VWB B 1 535 UNP Q58530 GCP_METJA 1 535 SEQRES 1 A 535 MET ILE CYS LEU GLY LEU GLU GLY THR ALA GLU LYS THR SEQRES 2 A 535 GLY VAL GLY ILE VAL THR SER ASP GLY GLU VAL LEU PHE SEQRES 3 A 535 ASN LYS THR ILE MET TYR LYS PRO PRO LYS GLN GLY ILE SEQRES 4 A 535 ASN PRO ARG GLU ALA ALA ASP HIS HIS ALA GLU THR PHE SEQRES 5 A 535 PRO LYS LEU ILE LYS GLU ALA PHE GLU VAL VAL ASP LYS SEQRES 6 A 535 ASN GLU ILE ASP LEU ILE ALA PHE SER GLN GLY PRO GLY SEQRES 7 A 535 LEU GLY PRO SER LEU ARG VAL THR ALA THR VAL ALA ARG SEQRES 8 A 535 THR LEU SER LEU THR LEU LYS LYS PRO ILE ILE GLY VAL SEQRES 9 A 535 ASN HIS CYS ILE ALA HIS ILE GLU ILE GLY LYS LEU THR SEQRES 10 A 535 THR GLU ALA GLU ASP PRO LEU THR LEU TYR VAL SER GLY SEQRES 11 A 535 GLY ASN THR GLN VAL ILE ALA TYR VAL SER LYS LYS TYR SEQRES 12 A 535 ARG VAL PHE GLY GLU THR LEU ASP ILE ALA VAL GLY ASN SEQRES 13 A 535 CYS LEU ASP GLN PHE ALA ARG TYR VAL ASN LEU PRO HIS SEQRES 14 A 535 PRO GLY GLY PRO TYR ILE GLU GLU LEU ALA ARG LYS GLY SEQRES 15 A 535 LYS LYS LEU VAL ASP LEU PRO TYR THR VAL LYS GLY MET SEQRES 16 A 535 ASP ILE ALA PHE SER GLY LEU LEU THR ALA ALA MET ARG SEQRES 17 A 535 ALA TYR ASP ALA GLY GLU ARG LEU GLU ASP ILE CYS TYR SEQRES 18 A 535 SER LEU GLN GLU TYR ALA PHE SER MET LEU THR GLU ILE SEQRES 19 A 535 THR GLU ARG ALA LEU ALA HIS THR ASN LYS GLY GLU VAL SEQRES 20 A 535 MET LEU VAL GLY GLY VAL ALA ALA ASN ASN ARG LEU ARG SEQRES 21 A 535 GLU MET LEU LYS ALA MET CYS GLU GLY GLN ASN VAL ASP SEQRES 22 A 535 PHE TYR VAL PRO PRO LYS GLU PHE CYS GLY ASP ASN GLY SEQRES 23 A 535 ALA MET ILE ALA TRP LEU GLY LEU LEU MET HIS LYS ASN SEQRES 24 A 535 GLY ARG TRP MET SER LEU ASP GLU THR LYS ILE ILE PRO SEQRES 25 A 535 ASN TYR ARG THR ASP MET VAL GLU VAL ASN TRP ILE LYS SEQRES 26 A 535 GLU ILE LYS GLY LYS LYS ARG LYS ILE PRO GLU HIS LEU SEQRES 27 A 535 ILE GLY LYS GLY ALA GLU ALA ASP ILE LYS ARG ASP SER SEQRES 28 A 535 TYR LEU ASP PHE ASP VAL ILE ILE LYS GLU ARG VAL LYS SEQRES 29 A 535 LYS GLY TYR ARG ASP GLU ARG LEU ASP GLU ASN ILE ARG SEQRES 30 A 535 LYS SER ARG THR ALA ARG GLU ALA ARG TYR LEU ALA LEU SEQRES 31 A 535 VAL LYS ASP PHE GLY ILE PRO ALA PRO TYR ILE PHE ASP SEQRES 32 A 535 VAL ASP LEU ASP ASN LYS ARG ILE MET MET SER TYR ILE SEQRES 33 A 535 ASN GLY LYS LEU ALA LYS ASP VAL ILE GLU ASP ASN LEU SEQRES 34 A 535 ASP ILE ALA TYR LYS ILE GLY GLU ILE VAL GLY LYS LEU SEQRES 35 A 535 HIS LYS ASN ASP VAL ILE HIS ASN ASP LEU THR THR SER SEQRES 36 A 535 ASN PHE ILE PHE ASP LYS ASP LEU TYR ILE ILE ASP PHE SEQRES 37 A 535 GLY LEU GLY LYS ILE SER ASN LEU ASP GLU ASP LYS ALA SEQRES 38 A 535 VAL ASP LEU ILE VAL PHE LYS LYS ALA VAL LEU SER THR SEQRES 39 A 535 HIS HIS GLU LYS PHE ASP GLU ILE TRP GLU ARG PHE LEU SEQRES 40 A 535 GLU GLY TYR LYS SER VAL TYR ASP ARG TRP GLU ILE ILE SEQRES 41 A 535 LEU GLU LEU MET LYS ASP VAL GLU ARG ARG ALA ARG TYR SEQRES 42 A 535 VAL GLU SEQRES 1 B 535 MET ILE CYS LEU GLY LEU GLU GLY THR ALA GLU LYS THR SEQRES 2 B 535 GLY VAL GLY ILE VAL THR SER ASP GLY GLU VAL LEU PHE SEQRES 3 B 535 ASN LYS THR ILE MET TYR LYS PRO PRO LYS GLN GLY ILE SEQRES 4 B 535 ASN PRO ARG GLU ALA ALA ASP HIS HIS ALA GLU THR PHE SEQRES 5 B 535 PRO LYS LEU ILE LYS GLU ALA PHE GLU VAL VAL ASP LYS SEQRES 6 B 535 ASN GLU ILE ASP LEU ILE ALA PHE SER GLN GLY PRO GLY SEQRES 7 B 535 LEU GLY PRO SER LEU ARG VAL THR ALA THR VAL ALA ARG SEQRES 8 B 535 THR LEU SER LEU THR LEU LYS LYS PRO ILE ILE GLY VAL SEQRES 9 B 535 ASN HIS CYS ILE ALA HIS ILE GLU ILE GLY LYS LEU THR SEQRES 10 B 535 THR GLU ALA GLU ASP PRO LEU THR LEU TYR VAL SER GLY SEQRES 11 B 535 GLY ASN THR GLN VAL ILE ALA TYR VAL SER LYS LYS TYR SEQRES 12 B 535 ARG VAL PHE GLY GLU THR LEU ASP ILE ALA VAL GLY ASN SEQRES 13 B 535 CYS LEU ASP GLN PHE ALA ARG TYR VAL ASN LEU PRO HIS SEQRES 14 B 535 PRO GLY GLY PRO TYR ILE GLU GLU LEU ALA ARG LYS GLY SEQRES 15 B 535 LYS LYS LEU VAL ASP LEU PRO TYR THR VAL LYS GLY MET SEQRES 16 B 535 ASP ILE ALA PHE SER GLY LEU LEU THR ALA ALA MET ARG SEQRES 17 B 535 ALA TYR ASP ALA GLY GLU ARG LEU GLU ASP ILE CYS TYR SEQRES 18 B 535 SER LEU GLN GLU TYR ALA PHE SER MET LEU THR GLU ILE SEQRES 19 B 535 THR GLU ARG ALA LEU ALA HIS THR ASN LYS GLY GLU VAL SEQRES 20 B 535 MET LEU VAL GLY GLY VAL ALA ALA ASN ASN ARG LEU ARG SEQRES 21 B 535 GLU MET LEU LYS ALA MET CYS GLU GLY GLN ASN VAL ASP SEQRES 22 B 535 PHE TYR VAL PRO PRO LYS GLU PHE CYS GLY ASP ASN GLY SEQRES 23 B 535 ALA MET ILE ALA TRP LEU GLY LEU LEU MET HIS LYS ASN SEQRES 24 B 535 GLY ARG TRP MET SER LEU ASP GLU THR LYS ILE ILE PRO SEQRES 25 B 535 ASN TYR ARG THR ASP MET VAL GLU VAL ASN TRP ILE LYS SEQRES 26 B 535 GLU ILE LYS GLY LYS LYS ARG LYS ILE PRO GLU HIS LEU SEQRES 27 B 535 ILE GLY LYS GLY ALA GLU ALA ASP ILE LYS ARG ASP SER SEQRES 28 B 535 TYR LEU ASP PHE ASP VAL ILE ILE LYS GLU ARG VAL LYS SEQRES 29 B 535 LYS GLY TYR ARG ASP GLU ARG LEU ASP GLU ASN ILE ARG SEQRES 30 B 535 LYS SER ARG THR ALA ARG GLU ALA ARG TYR LEU ALA LEU SEQRES 31 B 535 VAL LYS ASP PHE GLY ILE PRO ALA PRO TYR ILE PHE ASP SEQRES 32 B 535 VAL ASP LEU ASP ASN LYS ARG ILE MET MET SER TYR ILE SEQRES 33 B 535 ASN GLY LYS LEU ALA LYS ASP VAL ILE GLU ASP ASN LEU SEQRES 34 B 535 ASP ILE ALA TYR LYS ILE GLY GLU ILE VAL GLY LYS LEU SEQRES 35 B 535 HIS LYS ASN ASP VAL ILE HIS ASN ASP LEU THR THR SER SEQRES 36 B 535 ASN PHE ILE PHE ASP LYS ASP LEU TYR ILE ILE ASP PHE SEQRES 37 B 535 GLY LEU GLY LYS ILE SER ASN LEU ASP GLU ASP LYS ALA SEQRES 38 B 535 VAL ASP LEU ILE VAL PHE LYS LYS ALA VAL LEU SER THR SEQRES 39 B 535 HIS HIS GLU LYS PHE ASP GLU ILE TRP GLU ARG PHE LEU SEQRES 40 B 535 GLU GLY TYR LYS SER VAL TYR ASP ARG TRP GLU ILE ILE SEQRES 41 B 535 LEU GLU LEU MET LYS ASP VAL GLU ARG ARG ALA ARG TYR SEQRES 42 B 535 VAL GLU HET ANP A1531 31 HET ANP B1533 31 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER FORMUL 3 ANP 2(C10 H17 N6 O12 P3) HELIX 1 1 ALA A 45 VAL A 63 1 19 HELIX 2 2 ASP A 64 ILE A 68 5 5 HELIX 3 3 LEU A 79 THR A 96 1 18 HELIX 4 4 HIS A 106 GLU A 119 1 14 HELIX 5 5 ALA A 153 VAL A 165 1 13 HELIX 6 6 GLY A 171 ARG A 180 1 10 HELIX 7 7 PHE A 199 ALA A 212 1 14 HELIX 8 8 ARG A 215 ALA A 240 1 26 HELIX 9 9 GLY A 251 ALA A 255 5 5 HELIX 10 10 ASN A 256 GLY A 269 1 14 HELIX 11 11 PRO A 278 CYS A 282 5 5 HELIX 12 12 ASN A 285 ASN A 299 1 15 HELIX 13 13 SER A 304 THR A 308 5 5 HELIX 14 14 ASP A 369 VAL A 391 1 23 HELIX 15 15 LYS A 392 GLY A 395 5 4 HELIX 16 16 ALA A 421 GLU A 426 1 6 HELIX 17 17 LEU A 429 ASN A 445 1 17 HELIX 18 18 LEU A 476 HIS A 495 1 20 HELIX 19 19 LYS A 498 SER A 512 1 15 HELIX 20 20 ARG A 516 GLU A 528 1 13 HELIX 21 21 ALA B 45 GLU B 50 1 6 HELIX 22 22 THR B 51 VAL B 63 1 13 HELIX 23 23 ASP B 64 ILE B 68 5 5 HELIX 24 24 LEU B 79 LYS B 98 1 20 HELIX 25 25 HIS B 106 THR B 117 1 12 HELIX 26 26 ALA B 153 VAL B 165 1 13 HELIX 27 27 GLY B 171 ARG B 180 1 10 HELIX 28 28 PHE B 199 ALA B 212 1 14 HELIX 29 29 ARG B 215 ASN B 243 1 29 HELIX 30 30 GLY B 251 ALA B 255 5 5 HELIX 31 31 ASN B 256 GLY B 269 1 14 HELIX 32 32 PRO B 278 GLY B 283 1 6 HELIX 33 33 ASN B 285 ASN B 299 1 15 HELIX 34 34 SER B 304 LYS B 309 5 6 HELIX 35 35 ARG B 315 VAL B 319 5 5 HELIX 36 36 ASP B 369 VAL B 391 1 23 HELIX 37 37 LYS B 392 GLY B 395 5 4 HELIX 38 38 LEU B 406 ASN B 408 5 3 HELIX 39 39 ALA B 421 ILE B 425 1 5 HELIX 40 40 LEU B 429 ASN B 445 1 17 HELIX 41 41 LEU B 476 HIS B 495 1 20 HELIX 42 42 LYS B 498 TYR B 514 1 17 HELIX 43 43 ARG B 516 ARG B 530 1 15 SHEET 1 AA 5 VAL A 24 ILE A 30 0 SHEET 2 AA 5 THR A 13 THR A 19 -1 O THR A 13 N ILE A 30 SHEET 3 AA 5 ILE A 2 GLU A 7 -1 O CYS A 3 N VAL A 18 SHEET 4 AA 5 LEU A 70 GLY A 76 1 O LEU A 70 N LEU A 4 SHEET 5 AA 5 ILE A 101 ASN A 105 1 O ILE A 102 N PHE A 73 SHEET 1 AB 5 LYS A 142 GLU A 148 0 SHEET 2 AB 5 THR A 133 VAL A 139 -1 O VAL A 135 N PHE A 146 SHEET 3 AB 5 LEU A 124 VAL A 128 -1 O THR A 125 N ILE A 136 SHEET 4 AB 5 GLU A 246 VAL A 250 1 O GLU A 246 N LEU A 124 SHEET 5 AB 5 ASP A 273 TYR A 275 1 O ASP A 273 N VAL A 247 SHEET 1 AC 2 VAL A 192 LYS A 193 0 SHEET 2 AC 2 ASP A 196 ILE A 197 -1 O ASP A 196 N LYS A 193 SHEET 1 AD 4 ALA A 345 SER A 351 0 SHEET 2 AD 4 ASP A 356 ARG A 362 -1 O VAL A 357 N ASP A 350 SHEET 3 AD 4 ARG A 410 SER A 414 -1 O ILE A 411 N LYS A 360 SHEET 4 AD 4 ILE A 401 ASP A 405 -1 N PHE A 402 O MET A 412 SHEET 1 AE 3 LYS A 419 LEU A 420 0 SHEET 2 AE 3 PHE A 457 PHE A 459 -1 O PHE A 459 N LYS A 419 SHEET 3 AE 3 LEU A 463 ILE A 465 -1 O TYR A 464 N ILE A 458 SHEET 1 AF 2 VAL A 447 ILE A 448 0 SHEET 2 AF 2 LYS A 472 ILE A 473 -1 O LYS A 472 N ILE A 448 SHEET 1 BA 5 THR B 29 ILE B 30 0 SHEET 2 BA 5 THR B 13 THR B 19 -1 O THR B 13 N ILE B 30 SHEET 3 BA 5 ILE B 2 GLU B 7 -1 O CYS B 3 N VAL B 18 SHEET 4 BA 5 LEU B 70 GLY B 76 1 O LEU B 70 N LEU B 4 SHEET 5 BA 5 ILE B 101 ASN B 105 1 O ILE B 102 N PHE B 73 SHEET 1 BB 5 TYR B 143 GLU B 148 0 SHEET 2 BB 5 THR B 133 TYR B 138 -1 O VAL B 135 N PHE B 146 SHEET 3 BB 5 LEU B 124 VAL B 128 -1 O THR B 125 N ILE B 136 SHEET 4 BB 5 GLU B 246 VAL B 250 1 O GLU B 246 N LEU B 124 SHEET 5 BB 5 ASP B 273 TYR B 275 1 O ASP B 273 N VAL B 247 SHEET 1 BC 2 VAL B 192 LYS B 193 0 SHEET 2 BC 2 ASP B 196 ILE B 197 -1 O ASP B 196 N LYS B 193 SHEET 1 BD 4 ALA B 345 TYR B 352 0 SHEET 2 BD 4 PHE B 355 ARG B 362 -1 O PHE B 355 N TYR B 352 SHEET 3 BD 4 ARG B 410 SER B 414 -1 O ILE B 411 N LYS B 360 SHEET 4 BD 4 ILE B 401 ASP B 405 -1 N PHE B 402 O MET B 412 SHEET 1 BE 3 LYS B 419 LEU B 420 0 SHEET 2 BE 3 PHE B 457 PHE B 459 -1 O PHE B 459 N LYS B 419 SHEET 3 BE 3 LEU B 463 ILE B 465 -1 O TYR B 464 N ILE B 458 SHEET 1 BF 2 VAL B 447 ILE B 448 0 SHEET 2 BF 2 LYS B 472 ILE B 473 -1 O LYS B 472 N ILE B 448 CISPEP 1 GLY A 76 PRO A 77 0 -4.36 CISPEP 2 GLY B 76 PRO B 77 0 2.04 SITE 1 AC1 17 LYS A 12 HIS A 106 HIS A 110 TYR A 127 SITE 2 AC1 17 SER A 129 GLY A 130 GLY A 131 GLY A 155 SITE 3 AC1 17 LEU A 158 ASP A 159 GLY A 172 PRO A 173 SITE 4 AC1 17 GLU A 176 GLY A 252 VAL A 253 ASN A 256 SITE 5 AC1 17 ASP A 284 SITE 1 AC2 21 ALA B 10 LYS B 12 HIS B 106 HIS B 110 SITE 2 AC2 21 TYR B 127 SER B 129 GLY B 130 GLY B 131 SITE 3 AC2 21 GLY B 155 LEU B 158 ASP B 159 PRO B 170 SITE 4 AC2 21 GLY B 172 PRO B 173 GLU B 176 GLY B 252 SITE 5 AC2 21 VAL B 253 ALA B 255 ASN B 256 GLY B 283 SITE 6 AC2 21 ASP B 284 CRYST1 147.418 148.948 65.118 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006783 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006714 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015357 0.00000