HEADER TRANSCRIPTION 03-JUL-08 2VXF TITLE SOLUTION STRUCTURE OF THE LSM-DOMAIN OF ZEBRAFISH RAP55 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LSM14A PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DANIO RERIO RAP55; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRA FISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEU-HIS KEYWDS LSM PROTEINS, TRANSLATIONAL REPRESSION, TRANSCRIPTION, EDC3, RAP55, KEYWDS 2 CAR-1, P-BODIES, DECAPPING, MRNA DECAY EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.TRITSCHLER,M.COLES,V.TRUFFAULT REVDAT 5 15-MAY-24 2VXF 1 REMARK REVDAT 4 04-APR-18 2VXF 1 SOURCE JRNL REVDAT 3 24-FEB-09 2VXF 1 VERSN REVDAT 2 28-OCT-08 2VXF 1 JRNL REVDAT 1 16-SEP-08 2VXF 0 JRNL AUTH F.TRITSCHLER,A.EULALIO,S.HELMS,S.SCHMIDT,M.COLES, JRNL AUTH 2 O.WEICHENRIEDER,E.IZAURRALDE,V.TRUFFAULT JRNL TITL SIMILAR MODES OF INTERACTION ENABLE TRAILER HITCH AND EDC3 JRNL TITL 2 TO ASSOCIATE WITH DCP1 AND ME31B IN DISTINCT PROTEIN JRNL TITL 3 COMPLEXES. JRNL REF MOL. CELL. BIOL. V. 28 6695 2008 JRNL REFN ESSN 1098-5549 JRNL PMID 18765641 JRNL DOI 10.1128/MCB.00759-08 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 2.9.4 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT AS BEEN DONE SIMILARLY TO REMARK 3 THE N-TERMINAL LSM DOMAIN OF TRAL REMARK 4 REMARK 4 2VXF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1290036783. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 289.0 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 100 MM NACL, 10 MM BIS- TRIS, PH REMARK 210 7.0, 5 MM DTT, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; HNCO; HNCACB; REMARK 210 CCCONH; HCCCONH; CBCACONH; REMARK 210 HBHACONH; HCH-TOCSY; CCH- TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : XPLOR REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : MINIMUM ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, MET 1 TO PRO REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 17 MET A 85 C MET A 85 OXT 8.057 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 3 GLU A -1 166.24 68.65 REMARK 500 3 ASP A 59 -62.20 -150.25 REMARK 500 5 ARG A 58 -50.06 -138.74 REMARK 500 6 ASP A 59 32.94 -142.66 REMARK 500 11 ASP A 59 31.75 -99.95 REMARK 500 13 GLU A -1 -46.89 -150.81 REMARK 500 13 ASP A 59 -46.09 -157.62 REMARK 500 15 GLU A -1 -57.32 -128.81 REMARK 500 17 ASP A 59 -51.79 -155.78 REMARK 500 19 GLU A -1 -62.48 -143.56 REMARK 500 19 ILE A 84 51.13 -154.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VXE RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE LSM DOMAIN OF DROSOPHILA MELANOGASTER REMARK 900 TRAL (TRAILER HITCH) REMARK 999 REMARK 999 SEQUENCE REMARK 999 METHIONINE 1 IS REPLACED BY A PROLINE DBREF 2VXF A -9 0 PDB 2VXF 2VXF -9 0 DBREF 2VXF A 1 85 UNP Q7SXR4 Q7SXR4_DANRE 1 85 SEQADV 2VXF PRO A 1 UNP Q7SXR4 MET 1 ENGINEERED MUTATION SEQRES 1 A 95 GLY HIS HIS HIS HIS HIS HIS LEU GLU ASP PRO SER GLY SEQRES 2 A 95 GLY THR PRO TYR ILE GLY SER LYS ILE SER LEU ILE SER SEQRES 3 A 95 LYS ALA GLU ILE ARG TYR GLU GLY ILE LEU TYR THR ILE SEQRES 4 A 95 ASP THR GLU ASN SER THR VAL ALA LEU ALA LYS VAL ARG SEQRES 5 A 95 SER PHE GLY THR GLU ASP ARG PRO THR ASP ARG PRO ILE SEQRES 6 A 95 ALA PRO ARG ASP GLU THR PHE GLU TYR ILE ILE PHE ARG SEQRES 7 A 95 GLY SER ASP ILE LYS ASP LEU THR VAL CYS GLU PRO PRO SEQRES 8 A 95 LYS PRO ILE MET HELIX 1 1 ASP A 0 THR A 5 1 6 SHEET 1 AA 5 PHE A 62 ARG A 68 0 SHEET 2 AA 5 THR A 35 SER A 43 -1 O VAL A 36 N PHE A 67 SHEET 3 AA 5 ARG A 21 ASP A 30 -1 O GLU A 23 N ARG A 42 SHEET 4 AA 5 LYS A 11 SER A 16 -1 O ILE A 12 N GLY A 24 SHEET 5 AA 5 ILE A 72 VAL A 77 -1 N LYS A 73 O ILE A 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1