data_2VXL # _entry.id 2VXL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2VXL pdb_00002vxl 10.2210/pdb2vxl/pdb PDBE EBI-36809 ? ? WWPDB D_1290036809 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2VS4 unspecified 'THE BINDING OF UDP-GALACTOSE BY AN ACTIVE SITE MUTANT OF ALPHA-1,3 GALACTOSYLTRANSFERASE (ALPHA3GT)' PDB 1VZT unspecified 'ROLES ON INDIVIDUAL RESIDUES OF ALPHA-1,3 GALACTOSYLTRANSFERASES IN SUBSTRATE BINDING AND CATALYSIS' PDB 1GX0 unspecified ;STRUCTURAL BASIS OF ORDERED BINDING OF DONOR AND ACCEPTOR SUBSTRATES TO THE RETAINING GLYCOSYLTRANSFERASE: ALPHA -1,3 GALACTOSYLTRANSFERASE ; PDB 1VZX unspecified 'ROLES OF ACTIVE SITE TRYPTOPHANS IN SUBSTRATE BINDING AND CATALYSIS BY ALPHA-1, 3 GALACTOSYLTRANSFERASE' PDB 1O7Q unspecified 'ROLES OF INDIVIDUAL RESIDUES OF ALPHA-1,3 GALACTOSYLTRANSFERASES IN SUBSTRATE BINDING AND CATALYSIS' PDB 2VS5 unspecified 'THE BINDING OF UDP-GALACTOSE BY AN ACTIVE SITE MUTANT OF ALPHA-1,3 GALACTOSYLTRANSFERASE (ALPHA3GT)' PDB 1GX4 unspecified ;STRUCTURAL BASIS OF ORDERED BINDING OF DONOR AND ACCEPTOR SUBSTRATES TO THE RETAINING GLYCOSYLTRANSFERASE: ALPHA -1,3 GALACTOSYLTRANSFERASE ; PDB 2JCJ unspecified 'CRYSTAL STRUCTURE OF ALPHA-1,3 GALACTOSYLTRANSFERASE (C-TERMINUS TRUNCATED MUTANT-C3) IN COMPLEX WITH UDP AND TRIS' PDB 2JCK unspecified 'CRYSTAL STRUCTURE OF ALPHA-1,3 GALACTOSYLTRANSFERASE (R365K) IN COMPLEX WITH UDP AND 2 MANGANESE ION' PDB 2VFZ unspecified 'CRYSTAL STRUCTURE OF ALPHA-1,3 GALACTOSYLTRANSFERASE (R365K) IN COMPLEX WITH UDP-2F-GALACTOSE' PDB 1G93 unspecified 'CRYSTAL STRUCTURE OF THE BOVINE CATALYTIC DOMAIN OF ALPHA-1,3-GALACTOSYLTRANSFERASE IN THE PRESENCE OF UDP-GALACTOSE' PDB 1K4V unspecified '1.53 A CRYSTAL STRUCTURE OF THE BETA- GALACTOSIDE-ALPHA-1,3-GALACTOSYLTRANSFERASE IN COMPLEX WITH UDP' PDB 1GWV unspecified ;STRUCTURAL BASIS OF ORDERED BINDING OF DONOR AND ACCEPTOR SUBSTRATES TO THE RETAINING GLYCOSYLTRANSFERASE: ALPHA -1,3 GALACTOSYLTRANSFERASE ; PDB 1G8O unspecified 'CRYSTALLOGRAPHIC STRUCTURE OF THE NATIVE BOVINE ALPHA-1,3-GALACTOSYLTRANSFERASE CATALYTIC DOMAIN' PDB 2VS3 unspecified 'THE BINDING OF UDP-GALACTOSE BY AN ACTIVE SITE MUTANT OF ALPHA-1,3 GALACTOSYLTRANSFERASE (ALPHA3GT)' PDB 1VZU unspecified 'ROLES OF ACTIVE SITE TRYPTOPHANS IN SUBSTRATE BINDING AND CATALYSIS BY ALPHA-1, 3 GALACTOSYLTRANSFERASE' PDB 1O7O unspecified 'ROLES OF INDIVIDUAL RESIDUES OF ALPHA-1,3 GALACTOSYLTRANSFERASES IN SUBSTRATE BINDING AND CATALYSIS' PDB 2JCL unspecified 'CRYSTAL STRUCTURE OF ALPHA-1,3 GALACTOSYLTRANSFERASE (R365K) IN THE ABSENCE OF LIGANDS' PDB 1GWW unspecified ;STRUCTURAL BASIS OF ORDERED BINDING OF DONOR AND ACCEPTOR SUBSTRATES TO THE RETAINING GLYCOSYLTRANSFERASE: ALPHA -1,3 GALACTOSYLTRANSFERASE ; PDB 1FG5 unspecified 'CRYSTAL STRUCTURE OF BOVINE ALPHA-1,3- GALACTOSYLTRANSFERASECATALYTIC DOMAIN.' PDB 2JCO unspecified 'CRYSTAL STRUCTURE OF WILD TYPE ALPHA-1,3 GALACTOSYLTRANSFERASE IN THE ABSENCE OF LIGANDS' PDB 2VXM unspecified 'SCREENING A LIMITED STRUCTURE-BASED LIBRARY IDENTIFIES UDP-GALNAC-SPECIFIC MUTANTS OF ALPHA-1,3 GALACTOSYLTRANSFERASE' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VXL _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2008-07-07 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tumbale, P.' 1 'Jamaluddin, H.' 2 'Thiyagarajan, N.' 3 'Acharya, K.R.' 4 'Brew, K.' 5 # _citation.id primary _citation.title 'Screening a Limited Structure-Based Library Identifies Udp-Galnac-Specific Mutants of {Alpha}-1,3-Galactosyltransferase.' _citation.journal_abbrev Glycobiology _citation.journal_volume 18 _citation.page_first 1036 _citation.page_last ? _citation.year 2008 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 0959-6658 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18782853 _citation.pdbx_database_id_DOI 10.1093/GLYCOB/CWN083 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tumbale, P.' 1 ? primary 'Jamaluddin, H.' 2 ? primary 'Thiyagarajan, N.' 3 ? primary 'Acharya, K.R.' 4 ? primary 'Brew, K.' 5 ? # _cell.entry_id 2VXL _cell.length_a 70.197 _cell.length_b 70.197 _cell.length_c 126.991 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VXL _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'N-ACETYLLACTOSAMINIDE ALPHA-1,3-GALACTOSYLTRANSFERASE' 32560.500 1 2.4.1.87 YES 'RESIDUES 82-358' UDP-GALACTOSE 2 non-polymer syn 'MANGANESE (II) ION' 54.938 1 ? ? ? ? 3 non-polymer syn "URIDINE-5'-DIPHOSPHATE" 404.161 1 ? ? ? ? 4 water nat water 18.015 43 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;GALACTOSYLTRANSFERASE, UDP-GALACTOSE\: BETA-D-GALACTOSYL-1,4-N-ACETYL-D-GLUCOSAMINIDE ALPHA-1,3-GALACTOSYLTRANSFERASE, ALPHA-1,3 GALACTOSYLTRANSFERASE ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;KLKLSDWFNPFKRPEVVTMTKWKAPVVWEGTYNRAVLDNYYAKQKITVGLTVFAVGRYIEHYLEEFLTSANKHFMVGHPV IFYIMVDDVSRMPLIELGPLRSFKVFKIKPEKRWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKFGVETLGE SVAQLQAWWYKADPNDFTYERRKESAAYIPFGEGDFYYAGGLFGGTPTQVLNITQECFKGILKDKKNDIEAQWHDESHLN KYFLLNKPTKILSPEYCWDYHIGLPADIKLVKMSWQT ; _entity_poly.pdbx_seq_one_letter_code_can ;KLKLSDWFNPFKRPEVVTMTKWKAPVVWEGTYNRAVLDNYYAKQKITVGLTVFAVGRYIEHYLEEFLTSANKHFMVGHPV IFYIMVDDVSRMPLIELGPLRSFKVFKIKPEKRWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKFGVETLGE SVAQLQAWWYKADPNDFTYERRKESAAYIPFGEGDFYYAGGLFGGTPTQVLNITQECFKGILKDKKNDIEAQWHDESHLN KYFLLNKPTKILSPEYCWDYHIGLPADIKLVKMSWQT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 LEU n 1 3 LYS n 1 4 LEU n 1 5 SER n 1 6 ASP n 1 7 TRP n 1 8 PHE n 1 9 ASN n 1 10 PRO n 1 11 PHE n 1 12 LYS n 1 13 ARG n 1 14 PRO n 1 15 GLU n 1 16 VAL n 1 17 VAL n 1 18 THR n 1 19 MET n 1 20 THR n 1 21 LYS n 1 22 TRP n 1 23 LYS n 1 24 ALA n 1 25 PRO n 1 26 VAL n 1 27 VAL n 1 28 TRP n 1 29 GLU n 1 30 GLY n 1 31 THR n 1 32 TYR n 1 33 ASN n 1 34 ARG n 1 35 ALA n 1 36 VAL n 1 37 LEU n 1 38 ASP n 1 39 ASN n 1 40 TYR n 1 41 TYR n 1 42 ALA n 1 43 LYS n 1 44 GLN n 1 45 LYS n 1 46 ILE n 1 47 THR n 1 48 VAL n 1 49 GLY n 1 50 LEU n 1 51 THR n 1 52 VAL n 1 53 PHE n 1 54 ALA n 1 55 VAL n 1 56 GLY n 1 57 ARG n 1 58 TYR n 1 59 ILE n 1 60 GLU n 1 61 HIS n 1 62 TYR n 1 63 LEU n 1 64 GLU n 1 65 GLU n 1 66 PHE n 1 67 LEU n 1 68 THR n 1 69 SER n 1 70 ALA n 1 71 ASN n 1 72 LYS n 1 73 HIS n 1 74 PHE n 1 75 MET n 1 76 VAL n 1 77 GLY n 1 78 HIS n 1 79 PRO n 1 80 VAL n 1 81 ILE n 1 82 PHE n 1 83 TYR n 1 84 ILE n 1 85 MET n 1 86 VAL n 1 87 ASP n 1 88 ASP n 1 89 VAL n 1 90 SER n 1 91 ARG n 1 92 MET n 1 93 PRO n 1 94 LEU n 1 95 ILE n 1 96 GLU n 1 97 LEU n 1 98 GLY n 1 99 PRO n 1 100 LEU n 1 101 ARG n 1 102 SER n 1 103 PHE n 1 104 LYS n 1 105 VAL n 1 106 PHE n 1 107 LYS n 1 108 ILE n 1 109 LYS n 1 110 PRO n 1 111 GLU n 1 112 LYS n 1 113 ARG n 1 114 TRP n 1 115 GLN n 1 116 ASP n 1 117 ILE n 1 118 SER n 1 119 MET n 1 120 MET n 1 121 ARG n 1 122 MET n 1 123 LYS n 1 124 THR n 1 125 ILE n 1 126 GLY n 1 127 GLU n 1 128 HIS n 1 129 ILE n 1 130 VAL n 1 131 ALA n 1 132 HIS n 1 133 ILE n 1 134 GLN n 1 135 HIS n 1 136 GLU n 1 137 VAL n 1 138 ASP n 1 139 PHE n 1 140 LEU n 1 141 PHE n 1 142 CYS n 1 143 MET n 1 144 ASP n 1 145 VAL n 1 146 ASP n 1 147 GLN n 1 148 VAL n 1 149 PHE n 1 150 GLN n 1 151 ASP n 1 152 LYS n 1 153 PHE n 1 154 GLY n 1 155 VAL n 1 156 GLU n 1 157 THR n 1 158 LEU n 1 159 GLY n 1 160 GLU n 1 161 SER n 1 162 VAL n 1 163 ALA n 1 164 GLN n 1 165 LEU n 1 166 GLN n 1 167 ALA n 1 168 TRP n 1 169 TRP n 1 170 TYR n 1 171 LYS n 1 172 ALA n 1 173 ASP n 1 174 PRO n 1 175 ASN n 1 176 ASP n 1 177 PHE n 1 178 THR n 1 179 TYR n 1 180 GLU n 1 181 ARG n 1 182 ARG n 1 183 LYS n 1 184 GLU n 1 185 SER n 1 186 ALA n 1 187 ALA n 1 188 TYR n 1 189 ILE n 1 190 PRO n 1 191 PHE n 1 192 GLY n 1 193 GLU n 1 194 GLY n 1 195 ASP n 1 196 PHE n 1 197 TYR n 1 198 TYR n 1 199 ALA n 1 200 GLY n 1 201 GLY n 1 202 LEU n 1 203 PHE n 1 204 GLY n 1 205 GLY n 1 206 THR n 1 207 PRO n 1 208 THR n 1 209 GLN n 1 210 VAL n 1 211 LEU n 1 212 ASN n 1 213 ILE n 1 214 THR n 1 215 GLN n 1 216 GLU n 1 217 CYS n 1 218 PHE n 1 219 LYS n 1 220 GLY n 1 221 ILE n 1 222 LEU n 1 223 LYS n 1 224 ASP n 1 225 LYS n 1 226 LYS n 1 227 ASN n 1 228 ASP n 1 229 ILE n 1 230 GLU n 1 231 ALA n 1 232 GLN n 1 233 TRP n 1 234 HIS n 1 235 ASP n 1 236 GLU n 1 237 SER n 1 238 HIS n 1 239 LEU n 1 240 ASN n 1 241 LYS n 1 242 TYR n 1 243 PHE n 1 244 LEU n 1 245 LEU n 1 246 ASN n 1 247 LYS n 1 248 PRO n 1 249 THR n 1 250 LYS n 1 251 ILE n 1 252 LEU n 1 253 SER n 1 254 PRO n 1 255 GLU n 1 256 TYR n 1 257 CYS n 1 258 TRP n 1 259 ASP n 1 260 TYR n 1 261 HIS n 1 262 ILE n 1 263 GLY n 1 264 LEU n 1 265 PRO n 1 266 ALA n 1 267 ASP n 1 268 ILE n 1 269 LYS n 1 270 LEU n 1 271 VAL n 1 272 LYS n 1 273 MET n 1 274 SER n 1 275 TRP n 1 276 GLN n 1 277 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name BOVINE _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'BOS TAURUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9913 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET15B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GGTA1_BOVIN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P14769 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2VXL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 277 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P14769 _struct_ref_seq.db_align_beg 82 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 358 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 82 _struct_ref_seq.pdbx_auth_seq_align_end 358 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2VXL ALA A 199 ? UNP P14769 HIS 280 'engineered mutation' 280 1 1 2VXL GLY A 200 ? UNP P14769 ALA 281 'engineered mutation' 281 2 1 2VXL GLY A 201 ? UNP P14769 ALA 282 'engineered mutation' 282 3 1 2VXL LEU A 202 ? UNP P14769 ILE 283 'engineered mutation' 283 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UDP 'RNA linking' . "URIDINE-5'-DIPHOSPHATE" ? 'C9 H14 N2 O12 P2' 404.161 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2VXL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.6 _exptl_crystal.density_percent_sol 52.4 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;PROTEIN: 5 MG/ML IN 20 MM MES-NAOH BUFFER, PH 6.0, 10% GLYCEROL, CONTAINING 10 MM MNCL2 AND 10 MM UDP-GALNAC MOTHER LIQUOR: 10-15% PEG 6000, 0.1 M TRIS-HCL, PH 8.0 AND 15-25% MPD ; # _diffrn.id 1 _diffrn.ambient_temp 300 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2006-12-06 _diffrn_detector.details MIRROR # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(III)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SRS BEAMLINE PX10.1' _diffrn_source.pdbx_synchrotron_site SRS _diffrn_source.pdbx_synchrotron_beamline PX10.1 _diffrn_source.pdbx_wavelength 0.98 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2VXL _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.70 _reflns.number_obs 11624 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.14 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.10 _reflns.B_iso_Wilson_estimate 46.6 _reflns.pdbx_redundancy 3.1 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.70 _reflns_shell.d_res_low 2.85 _reflns_shell.percent_possible_all 98.3 _reflns_shell.Rmerge_I_obs 0.30 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.04 _reflns_shell.pdbx_redundancy 2.9 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2VXL _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 18690 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.91 _refine.ls_d_res_high 2.70 _refine.ls_percent_reflns_obs 99.4 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.192 _refine.ls_R_factor_R_free 0.260 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 3.0 _refine.ls_number_reflns_R_free 553 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 26.9 _refine.aniso_B[1][1] -6.41 _refine.aniso_B[2][2] -6.41 _refine.aniso_B[3][3] 12.82 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. BULK SOLVENT MODEL USED' _refine.pdbx_starting_model 'PDB ENTRY 2JCJ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2300 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 43 _refine_hist.number_atoms_total 2369 _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 43.91 # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.7 _refine_ls_shell.d_res_low 2.77 _refine_ls_shell.number_reflns_R_work 650 _refine_ls_shell.R_factor_R_work 0.264 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.405 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2VXL _struct.title 'Screening a Limited Structure-based Library Identifies UDP-GalNAc- Specific Mutants of alpha-1,3 Galactosyltransferase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2VXL _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;GLYCOSYLTRANSFERASE, GALACTOSYLTRANSFERASE, TRANSMEMBRANE, GOLGI APPARATUS, ENZYME MECHANISM, GLYCOPROTEIN, METAL-BINDING, SIGNAL-ANCHOR, ALPHA-1, MEMBRANE, MANGANESE, TRANSFERASE, TRANSFERASE SUBSTRATE SPECIFICITY ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 3 ? TRP A 7 ? LYS A 84 TRP A 88 5 ? 5 HELX_P HELX_P2 2 ASN A 9 ? ARG A 13 ? ASN A 90 ARG A 94 5 ? 5 HELX_P HELX_P3 3 ASN A 33 ? GLN A 44 ? ASN A 114 GLN A 125 1 ? 12 HELX_P HELX_P4 4 ARG A 57 ? PHE A 74 ? ARG A 138 PHE A 155 1 ? 18 HELX_P HELX_P5 5 ASP A 88 ? MET A 92 ? ASP A 169 MET A 173 5 ? 5 HELX_P HELX_P6 6 ARG A 113 ? HIS A 132 ? ARG A 194 HIS A 213 1 ? 20 HELX_P HELX_P7 7 HIS A 132 ? VAL A 137 ? HIS A 213 VAL A 218 1 ? 6 HELX_P HELX_P8 8 GLY A 154 ? LEU A 158 ? GLY A 235 LEU A 239 5 ? 5 HELX_P HELX_P9 9 THR A 206 ? LYS A 226 ? THR A 287 LYS A 307 1 ? 21 HELX_P HELX_P10 10 TRP A 233 ? ASN A 246 ? TRP A 314 ASN A 327 1 ? 14 HELX_P HELX_P11 11 PRO A 254 ? CYS A 257 ? PRO A 335 CYS A 338 5 ? 4 HELX_P HELX_P12 12 ASP A 259 ? GLY A 263 ? ASP A 340 GLY A 344 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 144 OD2 ? ? ? 1_555 B MN . MN ? ? A ASP 225 A MN 400 1_555 ? ? ? ? ? ? ? 2.096 ? ? metalc2 metalc ? ? A ASP 146 OD1 ? ? ? 1_555 B MN . MN ? ? A ASP 227 A MN 400 1_555 ? ? ? ? ? ? ? 2.369 ? ? metalc3 metalc ? ? A ASP 146 OD2 ? ? ? 1_555 B MN . MN ? ? A ASP 227 A MN 400 1_555 ? ? ? ? ? ? ? 2.395 ? ? metalc4 metalc ? ? B MN . MN ? ? ? 1_555 C UDP . O2B ? ? A MN 400 A UDP 401 1_555 ? ? ? ? ? ? ? 2.162 ? ? metalc5 metalc ? ? B MN . MN ? ? ? 1_555 C UDP . O1A ? ? A MN 400 A UDP 401 1_555 ? ? ? ? ? ? ? 2.251 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 8 ? AB ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AA 5 6 ? parallel AA 6 7 ? parallel AA 7 8 ? parallel AB 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 VAL A 26 ? VAL A 27 ? VAL A 107 VAL A 108 AA 2 LYS A 250 ? LEU A 252 ? LYS A 331 LEU A 333 AA 3 SER A 161 ? LEU A 165 ? SER A 242 LEU A 246 AA 4 TYR A 198 ? GLY A 205 ? TYR A 279 GLY A 286 AA 5 PHE A 139 ? MET A 143 ? PHE A 220 MET A 224 AA 6 VAL A 48 ? ALA A 54 ? VAL A 129 ALA A 135 AA 7 VAL A 80 ? VAL A 86 ? VAL A 161 VAL A 167 AA 8 ARG A 101 ? LYS A 107 ? ARG A 182 LYS A 188 AB 1 GLN A 147 ? PHE A 149 ? GLN A 228 PHE A 230 AB 2 MET A 273 ? TRP A 275 ? MET A 354 TRP A 356 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 27 ? N VAL A 108 O ILE A 251 ? O ILE A 332 AA 2 3 N LYS A 250 ? N LYS A 331 O SER A 161 ? O SER A 242 AA 3 4 O GLN A 164 ? O GLN A 245 N ALA A 199 ? N ALA A 280 AA 4 5 N GLY A 205 ? N GLY A 286 O LEU A 140 ? O LEU A 221 AA 5 6 N PHE A 141 ? N PHE A 222 O GLY A 49 ? O GLY A 130 AA 6 7 N LEU A 50 ? N LEU A 131 O ILE A 81 ? O ILE A 162 AA 7 8 N PHE A 82 ? N PHE A 163 O SER A 102 ? O SER A 183 AB 1 2 N VAL A 148 ? N VAL A 229 O SER A 274 ? O SER A 355 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN 400 ? 2 'BINDING SITE FOR RESIDUE MN A 400' AC2 Software A UDP 401 ? 10 'BINDING SITE FOR RESIDUE UDP A 401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ASP A 144 ? ASP A 225 . ? 1_555 ? 2 AC1 2 ASP A 146 ? ASP A 227 . ? 1_555 ? 3 AC2 10 LYS A 21 ? LYS A 102 . ? 1_555 ? 4 AC2 10 LYS A 23 ? LYS A 104 . ? 1_555 ? 5 AC2 10 PHE A 53 ? PHE A 134 . ? 1_555 ? 6 AC2 10 ALA A 54 ? ALA A 135 . ? 1_555 ? 7 AC2 10 TYR A 58 ? TYR A 139 . ? 1_555 ? 8 AC2 10 ILE A 117 ? ILE A 198 . ? 1_555 ? 9 AC2 10 SER A 118 ? SER A 199 . ? 1_555 ? 10 AC2 10 ASP A 144 ? ASP A 225 . ? 1_555 ? 11 AC2 10 ASP A 146 ? ASP A 227 . ? 1_555 ? 12 AC2 10 HOH D . ? HOH A 2025 . ? 1_555 ? # _database_PDB_matrix.entry_id 2VXL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2VXL _atom_sites.fract_transf_matrix[1][1] 0.014246 _atom_sites.fract_transf_matrix[1][2] 0.008225 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016449 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007875 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MN N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 82 82 LYS LYS A . n A 1 2 LEU 2 83 83 LEU LEU A . n A 1 3 LYS 3 84 84 LYS LYS A . n A 1 4 LEU 4 85 85 LEU LEU A . n A 1 5 SER 5 86 86 SER SER A . n A 1 6 ASP 6 87 87 ASP ASP A . n A 1 7 TRP 7 88 88 TRP TRP A . n A 1 8 PHE 8 89 89 PHE PHE A . n A 1 9 ASN 9 90 90 ASN ASN A . n A 1 10 PRO 10 91 91 PRO PRO A . n A 1 11 PHE 11 92 92 PHE PHE A . n A 1 12 LYS 12 93 93 LYS LYS A . n A 1 13 ARG 13 94 94 ARG ARG A . n A 1 14 PRO 14 95 95 PRO PRO A . n A 1 15 GLU 15 96 96 GLU GLU A . n A 1 16 VAL 16 97 97 VAL VAL A . n A 1 17 VAL 17 98 98 VAL VAL A . n A 1 18 THR 18 99 99 THR THR A . n A 1 19 MET 19 100 100 MET MET A . n A 1 20 THR 20 101 101 THR THR A . n A 1 21 LYS 21 102 102 LYS LYS A . n A 1 22 TRP 22 103 103 TRP TRP A . n A 1 23 LYS 23 104 104 LYS LYS A . n A 1 24 ALA 24 105 105 ALA ALA A . n A 1 25 PRO 25 106 106 PRO PRO A . n A 1 26 VAL 26 107 107 VAL VAL A . n A 1 27 VAL 27 108 108 VAL VAL A . n A 1 28 TRP 28 109 109 TRP TRP A . n A 1 29 GLU 29 110 110 GLU GLU A . n A 1 30 GLY 30 111 111 GLY GLY A . n A 1 31 THR 31 112 112 THR THR A . n A 1 32 TYR 32 113 113 TYR TYR A . n A 1 33 ASN 33 114 114 ASN ASN A . n A 1 34 ARG 34 115 115 ARG ARG A . n A 1 35 ALA 35 116 116 ALA ALA A . n A 1 36 VAL 36 117 117 VAL VAL A . n A 1 37 LEU 37 118 118 LEU LEU A . n A 1 38 ASP 38 119 119 ASP ASP A . n A 1 39 ASN 39 120 120 ASN ASN A . n A 1 40 TYR 40 121 121 TYR TYR A . n A 1 41 TYR 41 122 122 TYR TYR A . n A 1 42 ALA 42 123 123 ALA ALA A . n A 1 43 LYS 43 124 124 LYS LYS A . n A 1 44 GLN 44 125 125 GLN GLN A . n A 1 45 LYS 45 126 126 LYS LYS A . n A 1 46 ILE 46 127 127 ILE ILE A . n A 1 47 THR 47 128 128 THR THR A . n A 1 48 VAL 48 129 129 VAL VAL A . n A 1 49 GLY 49 130 130 GLY GLY A . n A 1 50 LEU 50 131 131 LEU LEU A . n A 1 51 THR 51 132 132 THR THR A . n A 1 52 VAL 52 133 133 VAL VAL A . n A 1 53 PHE 53 134 134 PHE PHE A . n A 1 54 ALA 54 135 135 ALA ALA A . n A 1 55 VAL 55 136 136 VAL VAL A . n A 1 56 GLY 56 137 137 GLY GLY A . n A 1 57 ARG 57 138 138 ARG ARG A . n A 1 58 TYR 58 139 139 TYR TYR A . n A 1 59 ILE 59 140 140 ILE ILE A . n A 1 60 GLU 60 141 141 GLU GLU A . n A 1 61 HIS 61 142 142 HIS HIS A . n A 1 62 TYR 62 143 143 TYR TYR A . n A 1 63 LEU 63 144 144 LEU LEU A . n A 1 64 GLU 64 145 145 GLU GLU A . n A 1 65 GLU 65 146 146 GLU GLU A . n A 1 66 PHE 66 147 147 PHE PHE A . n A 1 67 LEU 67 148 148 LEU LEU A . n A 1 68 THR 68 149 149 THR THR A . n A 1 69 SER 69 150 150 SER SER A . n A 1 70 ALA 70 151 151 ALA ALA A . n A 1 71 ASN 71 152 152 ASN ASN A . n A 1 72 LYS 72 153 153 LYS LYS A . n A 1 73 HIS 73 154 154 HIS HIS A . n A 1 74 PHE 74 155 155 PHE PHE A . n A 1 75 MET 75 156 156 MET MET A . n A 1 76 VAL 76 157 157 VAL VAL A . n A 1 77 GLY 77 158 158 GLY GLY A . n A 1 78 HIS 78 159 159 HIS HIS A . n A 1 79 PRO 79 160 160 PRO PRO A . n A 1 80 VAL 80 161 161 VAL VAL A . n A 1 81 ILE 81 162 162 ILE ILE A . n A 1 82 PHE 82 163 163 PHE PHE A . n A 1 83 TYR 83 164 164 TYR TYR A . n A 1 84 ILE 84 165 165 ILE ILE A . n A 1 85 MET 85 166 166 MET MET A . n A 1 86 VAL 86 167 167 VAL VAL A . n A 1 87 ASP 87 168 168 ASP ASP A . n A 1 88 ASP 88 169 169 ASP ASP A . n A 1 89 VAL 89 170 170 VAL VAL A . n A 1 90 SER 90 171 171 SER SER A . n A 1 91 ARG 91 172 172 ARG ARG A . n A 1 92 MET 92 173 173 MET MET A . n A 1 93 PRO 93 174 174 PRO PRO A . n A 1 94 LEU 94 175 175 LEU LEU A . n A 1 95 ILE 95 176 176 ILE ILE A . n A 1 96 GLU 96 177 177 GLU GLU A . n A 1 97 LEU 97 178 178 LEU LEU A . n A 1 98 GLY 98 179 179 GLY GLY A . n A 1 99 PRO 99 180 180 PRO PRO A . n A 1 100 LEU 100 181 181 LEU LEU A . n A 1 101 ARG 101 182 182 ARG ARG A . n A 1 102 SER 102 183 183 SER SER A . n A 1 103 PHE 103 184 184 PHE PHE A . n A 1 104 LYS 104 185 185 LYS LYS A . n A 1 105 VAL 105 186 186 VAL VAL A . n A 1 106 PHE 106 187 187 PHE PHE A . n A 1 107 LYS 107 188 188 LYS LYS A . n A 1 108 ILE 108 189 189 ILE ILE A . n A 1 109 LYS 109 190 190 LYS LYS A . n A 1 110 PRO 110 191 191 PRO PRO A . n A 1 111 GLU 111 192 192 GLU GLU A . n A 1 112 LYS 112 193 193 LYS LYS A . n A 1 113 ARG 113 194 194 ARG ARG A . n A 1 114 TRP 114 195 195 TRP TRP A . n A 1 115 GLN 115 196 196 GLN GLN A . n A 1 116 ASP 116 197 197 ASP ASP A . n A 1 117 ILE 117 198 198 ILE ILE A . n A 1 118 SER 118 199 199 SER SER A . n A 1 119 MET 119 200 200 MET MET A . n A 1 120 MET 120 201 201 MET MET A . n A 1 121 ARG 121 202 202 ARG ARG A . n A 1 122 MET 122 203 203 MET MET A . n A 1 123 LYS 123 204 204 LYS LYS A . n A 1 124 THR 124 205 205 THR THR A . n A 1 125 ILE 125 206 206 ILE ILE A . n A 1 126 GLY 126 207 207 GLY GLY A . n A 1 127 GLU 127 208 208 GLU GLU A . n A 1 128 HIS 128 209 209 HIS HIS A . n A 1 129 ILE 129 210 210 ILE ILE A . n A 1 130 VAL 130 211 211 VAL VAL A . n A 1 131 ALA 131 212 212 ALA ALA A . n A 1 132 HIS 132 213 213 HIS HIS A . n A 1 133 ILE 133 214 214 ILE ILE A . n A 1 134 GLN 134 215 215 GLN GLN A . n A 1 135 HIS 135 216 216 HIS HIS A . n A 1 136 GLU 136 217 217 GLU GLU A . n A 1 137 VAL 137 218 218 VAL VAL A . n A 1 138 ASP 138 219 219 ASP ASP A . n A 1 139 PHE 139 220 220 PHE PHE A . n A 1 140 LEU 140 221 221 LEU LEU A . n A 1 141 PHE 141 222 222 PHE PHE A . n A 1 142 CYS 142 223 223 CYS CYS A . n A 1 143 MET 143 224 224 MET MET A . n A 1 144 ASP 144 225 225 ASP ASP A . n A 1 145 VAL 145 226 226 VAL VAL A . n A 1 146 ASP 146 227 227 ASP ASP A . n A 1 147 GLN 147 228 228 GLN GLN A . n A 1 148 VAL 148 229 229 VAL VAL A . n A 1 149 PHE 149 230 230 PHE PHE A . n A 1 150 GLN 150 231 231 GLN GLN A . n A 1 151 ASP 151 232 232 ASP ASP A . n A 1 152 LYS 152 233 233 LYS LYS A . n A 1 153 PHE 153 234 234 PHE PHE A . n A 1 154 GLY 154 235 235 GLY GLY A . n A 1 155 VAL 155 236 236 VAL VAL A . n A 1 156 GLU 156 237 237 GLU GLU A . n A 1 157 THR 157 238 238 THR THR A . n A 1 158 LEU 158 239 239 LEU LEU A . n A 1 159 GLY 159 240 240 GLY GLY A . n A 1 160 GLU 160 241 241 GLU GLU A . n A 1 161 SER 161 242 242 SER SER A . n A 1 162 VAL 162 243 243 VAL VAL A . n A 1 163 ALA 163 244 244 ALA ALA A . n A 1 164 GLN 164 245 245 GLN GLN A . n A 1 165 LEU 165 246 246 LEU LEU A . n A 1 166 GLN 166 247 247 GLN GLN A . n A 1 167 ALA 167 248 248 ALA ALA A . n A 1 168 TRP 168 249 249 TRP TRP A . n A 1 169 TRP 169 250 250 TRP TRP A . n A 1 170 TYR 170 251 251 TYR TYR A . n A 1 171 LYS 171 252 252 LYS LYS A . n A 1 172 ALA 172 253 253 ALA ALA A . n A 1 173 ASP 173 254 254 ASP ASP A . n A 1 174 PRO 174 255 255 PRO PRO A . n A 1 175 ASN 175 256 256 ASN ASN A . n A 1 176 ASP 176 257 257 ASP ASP A . n A 1 177 PHE 177 258 258 PHE PHE A . n A 1 178 THR 178 259 259 THR THR A . n A 1 179 TYR 179 260 260 TYR TYR A . n A 1 180 GLU 180 261 261 GLU GLU A . n A 1 181 ARG 181 262 262 ARG ARG A . n A 1 182 ARG 182 263 263 ARG ARG A . n A 1 183 LYS 183 264 264 LYS LYS A . n A 1 184 GLU 184 265 265 GLU GLU A . n A 1 185 SER 185 266 266 SER SER A . n A 1 186 ALA 186 267 267 ALA ALA A . n A 1 187 ALA 187 268 268 ALA ALA A . n A 1 188 TYR 188 269 269 TYR TYR A . n A 1 189 ILE 189 270 270 ILE ILE A . n A 1 190 PRO 190 271 271 PRO PRO A . n A 1 191 PHE 191 272 272 PHE PHE A . n A 1 192 GLY 192 273 273 GLY GLY A . n A 1 193 GLU 193 274 274 GLU GLU A . n A 1 194 GLY 194 275 275 GLY GLY A . n A 1 195 ASP 195 276 276 ASP ASP A . n A 1 196 PHE 196 277 277 PHE PHE A . n A 1 197 TYR 197 278 278 TYR TYR A . n A 1 198 TYR 198 279 279 TYR TYR A . n A 1 199 ALA 199 280 280 ALA ALA A . n A 1 200 GLY 200 281 281 GLY GLY A . n A 1 201 GLY 201 282 282 GLY GLY A . n A 1 202 LEU 202 283 283 LEU LEU A . n A 1 203 PHE 203 284 284 PHE PHE A . n A 1 204 GLY 204 285 285 GLY GLY A . n A 1 205 GLY 205 286 286 GLY GLY A . n A 1 206 THR 206 287 287 THR THR A . n A 1 207 PRO 207 288 288 PRO PRO A . n A 1 208 THR 208 289 289 THR THR A . n A 1 209 GLN 209 290 290 GLN GLN A . n A 1 210 VAL 210 291 291 VAL VAL A . n A 1 211 LEU 211 292 292 LEU LEU A . n A 1 212 ASN 212 293 293 ASN ASN A . n A 1 213 ILE 213 294 294 ILE ILE A . n A 1 214 THR 214 295 295 THR THR A . n A 1 215 GLN 215 296 296 GLN GLN A . n A 1 216 GLU 216 297 297 GLU GLU A . n A 1 217 CYS 217 298 298 CYS CYS A . n A 1 218 PHE 218 299 299 PHE PHE A . n A 1 219 LYS 219 300 300 LYS LYS A . n A 1 220 GLY 220 301 301 GLY GLY A . n A 1 221 ILE 221 302 302 ILE ILE A . n A 1 222 LEU 222 303 303 LEU LEU A . n A 1 223 LYS 223 304 304 LYS LYS A . n A 1 224 ASP 224 305 305 ASP ASP A . n A 1 225 LYS 225 306 306 LYS LYS A . n A 1 226 LYS 226 307 307 LYS LYS A . n A 1 227 ASN 227 308 308 ASN ASN A . n A 1 228 ASP 228 309 309 ASP ASP A . n A 1 229 ILE 229 310 310 ILE ILE A . n A 1 230 GLU 230 311 311 GLU GLU A . n A 1 231 ALA 231 312 312 ALA ALA A . n A 1 232 GLN 232 313 313 GLN GLN A . n A 1 233 TRP 233 314 314 TRP TRP A . n A 1 234 HIS 234 315 315 HIS HIS A . n A 1 235 ASP 235 316 316 ASP ASP A . n A 1 236 GLU 236 317 317 GLU GLU A . n A 1 237 SER 237 318 318 SER SER A . n A 1 238 HIS 238 319 319 HIS HIS A . n A 1 239 LEU 239 320 320 LEU LEU A . n A 1 240 ASN 240 321 321 ASN ASN A . n A 1 241 LYS 241 322 322 LYS LYS A . n A 1 242 TYR 242 323 323 TYR TYR A . n A 1 243 PHE 243 324 324 PHE PHE A . n A 1 244 LEU 244 325 325 LEU LEU A . n A 1 245 LEU 245 326 326 LEU LEU A . n A 1 246 ASN 246 327 327 ASN ASN A . n A 1 247 LYS 247 328 328 LYS LYS A . n A 1 248 PRO 248 329 329 PRO PRO A . n A 1 249 THR 249 330 330 THR THR A . n A 1 250 LYS 250 331 331 LYS LYS A . n A 1 251 ILE 251 332 332 ILE ILE A . n A 1 252 LEU 252 333 333 LEU LEU A . n A 1 253 SER 253 334 334 SER SER A . n A 1 254 PRO 254 335 335 PRO PRO A . n A 1 255 GLU 255 336 336 GLU GLU A . n A 1 256 TYR 256 337 337 TYR TYR A . n A 1 257 CYS 257 338 338 CYS CYS A . n A 1 258 TRP 258 339 339 TRP TRP A . n A 1 259 ASP 259 340 340 ASP ASP A . n A 1 260 TYR 260 341 341 TYR TYR A . n A 1 261 HIS 261 342 342 HIS HIS A . n A 1 262 ILE 262 343 343 ILE ILE A . n A 1 263 GLY 263 344 344 GLY GLY A . n A 1 264 LEU 264 345 345 LEU LEU A . n A 1 265 PRO 265 346 346 PRO PRO A . n A 1 266 ALA 266 347 347 ALA ALA A . n A 1 267 ASP 267 348 348 ASP ASP A . n A 1 268 ILE 268 349 349 ILE ILE A . n A 1 269 LYS 269 350 350 LYS LYS A . n A 1 270 LEU 270 351 351 LEU LEU A . n A 1 271 VAL 271 352 352 VAL VAL A . n A 1 272 LYS 272 353 353 LYS LYS A . n A 1 273 MET 273 354 354 MET MET A . n A 1 274 SER 274 355 355 SER SER A . n A 1 275 TRP 275 356 356 TRP TRP A . n A 1 276 GLN 276 357 357 GLN GLN A . n A 1 277 THR 277 358 358 THR THR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN 1 400 400 MN MN A . C 3 UDP 1 401 401 UDP UDP A . D 4 HOH 1 2001 2001 HOH HOH A . D 4 HOH 2 2002 2002 HOH HOH A . D 4 HOH 3 2003 2003 HOH HOH A . D 4 HOH 4 2004 2004 HOH HOH A . D 4 HOH 5 2005 2005 HOH HOH A . D 4 HOH 6 2006 2006 HOH HOH A . D 4 HOH 7 2007 2007 HOH HOH A . D 4 HOH 8 2008 2008 HOH HOH A . D 4 HOH 9 2009 2009 HOH HOH A . D 4 HOH 10 2010 2010 HOH HOH A . D 4 HOH 11 2011 2011 HOH HOH A . D 4 HOH 12 2012 2012 HOH HOH A . D 4 HOH 13 2013 2013 HOH HOH A . D 4 HOH 14 2014 2014 HOH HOH A . D 4 HOH 15 2015 2015 HOH HOH A . D 4 HOH 16 2016 2016 HOH HOH A . D 4 HOH 17 2017 2017 HOH HOH A . D 4 HOH 18 2018 2018 HOH HOH A . D 4 HOH 19 2019 2019 HOH HOH A . D 4 HOH 20 2020 2020 HOH HOH A . D 4 HOH 21 2021 2021 HOH HOH A . D 4 HOH 22 2022 2022 HOH HOH A . D 4 HOH 23 2023 2023 HOH HOH A . D 4 HOH 24 2024 2024 HOH HOH A . D 4 HOH 25 2025 2025 HOH HOH A . D 4 HOH 26 2026 2026 HOH HOH A . D 4 HOH 27 2027 2027 HOH HOH A . D 4 HOH 28 2028 2028 HOH HOH A . D 4 HOH 29 2029 2029 HOH HOH A . D 4 HOH 30 2030 2030 HOH HOH A . D 4 HOH 31 2031 2031 HOH HOH A . D 4 HOH 32 2032 2032 HOH HOH A . D 4 HOH 33 2033 2033 HOH HOH A . D 4 HOH 34 2034 2034 HOH HOH A . D 4 HOH 35 2035 2035 HOH HOH A . D 4 HOH 36 2036 2036 HOH HOH A . D 4 HOH 37 2037 2037 HOH HOH A . D 4 HOH 38 2038 2038 HOH HOH A . D 4 HOH 39 2039 2039 HOH HOH A . D 4 HOH 40 2040 2040 HOH HOH A . D 4 HOH 41 2041 2041 HOH HOH A . D 4 HOH 42 2042 2042 HOH HOH A . D 4 HOH 43 2043 2043 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 144 ? A ASP 225 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 OD1 ? A ASP 146 ? A ASP 227 ? 1_555 98.8 ? 2 OD2 ? A ASP 144 ? A ASP 225 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 OD2 ? A ASP 146 ? A ASP 227 ? 1_555 153.6 ? 3 OD1 ? A ASP 146 ? A ASP 227 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 OD2 ? A ASP 146 ? A ASP 227 ? 1_555 55.1 ? 4 OD2 ? A ASP 144 ? A ASP 225 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 O2B ? C UDP . ? A UDP 401 ? 1_555 107.8 ? 5 OD1 ? A ASP 146 ? A ASP 227 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 O2B ? C UDP . ? A UDP 401 ? 1_555 146.6 ? 6 OD2 ? A ASP 146 ? A ASP 227 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 O2B ? C UDP . ? A UDP 401 ? 1_555 98.0 ? 7 OD2 ? A ASP 144 ? A ASP 225 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 O1A ? C UDP . ? A UDP 401 ? 1_555 91.0 ? 8 OD1 ? A ASP 146 ? A ASP 227 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 O1A ? C UDP . ? A UDP 401 ? 1_555 77.4 ? 9 OD2 ? A ASP 146 ? A ASP 227 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 O1A ? C UDP . ? A UDP 401 ? 1_555 86.8 ? 10 O2B ? C UDP . ? A UDP 401 ? 1_555 MN ? B MN . ? A MN 400 ? 1_555 O1A ? C UDP . ? A UDP 401 ? 1_555 82.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-23 2 'Structure model' 1 1 2011-05-07 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_sf' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.value' 17 4 'Structure model' '_struct_conn.pdbx_dist_value' 18 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 30 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_entry_details.entry_id 2VXL _pdbx_entry_details.compound_details ;ENGINEERED RESIDUE IN CHAIN A, HIS 280 TO ALA ENGINEERED RESIDUE IN CHAIN A, ALA 281 TO GLY ENGINEERED RESIDUE IN CHAIN A, ALA 282 TO GLY ENGINEERED RESIDUE IN CHAIN A, ILE 283 TO LEU ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 103 ? ? -68.70 3.10 2 1 MET A 173 ? ? -38.95 117.22 3 1 HIS A 213 ? ? -148.12 -48.92 4 1 ASP A 227 ? ? -78.62 42.93 5 1 THR A 259 ? ? -83.70 46.87 6 1 HIS A 315 ? ? 57.50 -121.12 7 1 CYS A 338 ? ? -161.70 79.15 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 MN MN MN N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PRO N N N N 274 PRO CA C N S 275 PRO C C N N 276 PRO O O N N 277 PRO CB C N N 278 PRO CG C N N 279 PRO CD C N N 280 PRO OXT O N N 281 PRO H H N N 282 PRO HA H N N 283 PRO HB2 H N N 284 PRO HB3 H N N 285 PRO HG2 H N N 286 PRO HG3 H N N 287 PRO HD2 H N N 288 PRO HD3 H N N 289 PRO HXT H N N 290 SER N N N N 291 SER CA C N S 292 SER C C N N 293 SER O O N N 294 SER CB C N N 295 SER OG O N N 296 SER OXT O N N 297 SER H H N N 298 SER H2 H N N 299 SER HA H N N 300 SER HB2 H N N 301 SER HB3 H N N 302 SER HG H N N 303 SER HXT H N N 304 THR N N N N 305 THR CA C N S 306 THR C C N N 307 THR O O N N 308 THR CB C N R 309 THR OG1 O N N 310 THR CG2 C N N 311 THR OXT O N N 312 THR H H N N 313 THR H2 H N N 314 THR HA H N N 315 THR HB H N N 316 THR HG1 H N N 317 THR HG21 H N N 318 THR HG22 H N N 319 THR HG23 H N N 320 THR HXT H N N 321 TRP N N N N 322 TRP CA C N S 323 TRP C C N N 324 TRP O O N N 325 TRP CB C N N 326 TRP CG C Y N 327 TRP CD1 C Y N 328 TRP CD2 C Y N 329 TRP NE1 N Y N 330 TRP CE2 C Y N 331 TRP CE3 C Y N 332 TRP CZ2 C Y N 333 TRP CZ3 C Y N 334 TRP CH2 C Y N 335 TRP OXT O N N 336 TRP H H N N 337 TRP H2 H N N 338 TRP HA H N N 339 TRP HB2 H N N 340 TRP HB3 H N N 341 TRP HD1 H N N 342 TRP HE1 H N N 343 TRP HE3 H N N 344 TRP HZ2 H N N 345 TRP HZ3 H N N 346 TRP HH2 H N N 347 TRP HXT H N N 348 TYR N N N N 349 TYR CA C N S 350 TYR C C N N 351 TYR O O N N 352 TYR CB C N N 353 TYR CG C Y N 354 TYR CD1 C Y N 355 TYR CD2 C Y N 356 TYR CE1 C Y N 357 TYR CE2 C Y N 358 TYR CZ C Y N 359 TYR OH O N N 360 TYR OXT O N N 361 TYR H H N N 362 TYR H2 H N N 363 TYR HA H N N 364 TYR HB2 H N N 365 TYR HB3 H N N 366 TYR HD1 H N N 367 TYR HD2 H N N 368 TYR HE1 H N N 369 TYR HE2 H N N 370 TYR HH H N N 371 TYR HXT H N N 372 UDP N1 N N N 373 UDP C2 C N N 374 UDP N3 N N N 375 UDP C4 C N N 376 UDP C5 C N N 377 UDP C6 C N N 378 UDP O2 O N N 379 UDP O4 O N N 380 UDP "C1'" C N R 381 UDP "C2'" C N R 382 UDP "O2'" O N N 383 UDP "C3'" C N S 384 UDP "C4'" C N R 385 UDP "O4'" O N N 386 UDP "O3'" O N N 387 UDP "C5'" C N N 388 UDP "O5'" O N N 389 UDP PA P N N 390 UDP O1A O N N 391 UDP O2A O N N 392 UDP O3A O N N 393 UDP PB P N N 394 UDP O1B O N N 395 UDP O2B O N N 396 UDP O3B O N N 397 UDP HN3 H N N 398 UDP H5 H N N 399 UDP H6 H N N 400 UDP "H1'" H N N 401 UDP "H2'" H N N 402 UDP "HO2'" H N N 403 UDP "H3'" H N N 404 UDP "H4'" H N N 405 UDP "HO3'" H N N 406 UDP "H5'1" H N N 407 UDP "H5'2" H N N 408 UDP HOA2 H N N 409 UDP HOB2 H N N 410 UDP HOB3 H N N 411 VAL N N N N 412 VAL CA C N S 413 VAL C C N N 414 VAL O O N N 415 VAL CB C N N 416 VAL CG1 C N N 417 VAL CG2 C N N 418 VAL OXT O N N 419 VAL H H N N 420 VAL H2 H N N 421 VAL HA H N N 422 VAL HB H N N 423 VAL HG11 H N N 424 VAL HG12 H N N 425 VAL HG13 H N N 426 VAL HG21 H N N 427 VAL HG22 H N N 428 VAL HG23 H N N 429 VAL HXT H N N 430 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 UDP N1 C2 sing N N 358 UDP N1 C6 sing N N 359 UDP N1 "C1'" sing N N 360 UDP C2 N3 sing N N 361 UDP C2 O2 doub N N 362 UDP N3 C4 sing N N 363 UDP N3 HN3 sing N N 364 UDP C4 C5 sing N N 365 UDP C4 O4 doub N N 366 UDP C5 C6 doub N N 367 UDP C5 H5 sing N N 368 UDP C6 H6 sing N N 369 UDP "C1'" "C2'" sing N N 370 UDP "C1'" "O4'" sing N N 371 UDP "C1'" "H1'" sing N N 372 UDP "C2'" "O2'" sing N N 373 UDP "C2'" "C3'" sing N N 374 UDP "C2'" "H2'" sing N N 375 UDP "O2'" "HO2'" sing N N 376 UDP "C3'" "C4'" sing N N 377 UDP "C3'" "O3'" sing N N 378 UDP "C3'" "H3'" sing N N 379 UDP "C4'" "O4'" sing N N 380 UDP "C4'" "C5'" sing N N 381 UDP "C4'" "H4'" sing N N 382 UDP "O3'" "HO3'" sing N N 383 UDP "C5'" "O5'" sing N N 384 UDP "C5'" "H5'1" sing N N 385 UDP "C5'" "H5'2" sing N N 386 UDP "O5'" PA sing N N 387 UDP PA O1A doub N N 388 UDP PA O2A sing N N 389 UDP PA O3A sing N N 390 UDP O2A HOA2 sing N N 391 UDP O3A PB sing N N 392 UDP PB O1B doub N N 393 UDP PB O2B sing N N 394 UDP PB O3B sing N N 395 UDP O2B HOB2 sing N N 396 UDP O3B HOB3 sing N N 397 VAL N CA sing N N 398 VAL N H sing N N 399 VAL N H2 sing N N 400 VAL CA C sing N N 401 VAL CA CB sing N N 402 VAL CA HA sing N N 403 VAL C O doub N N 404 VAL C OXT sing N N 405 VAL CB CG1 sing N N 406 VAL CB CG2 sing N N 407 VAL CB HB sing N N 408 VAL CG1 HG11 sing N N 409 VAL CG1 HG12 sing N N 410 VAL CG1 HG13 sing N N 411 VAL CG2 HG21 sing N N 412 VAL CG2 HG22 sing N N 413 VAL CG2 HG23 sing N N 414 VAL OXT HXT sing N N 415 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MANGANESE (II) ION' MN 3 "URIDINE-5'-DIPHOSPHATE" UDP 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2JCJ _pdbx_initial_refinement_model.details 'PDB ENTRY 2JCJ' #